Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006577.1

Orthogroup ID

OG0008758

Physical Location & Seq

Genomic Coordinates Forward (+)

23448 .. 38787

Gene Structure 15340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3669 bp

atgtcactgacgtcctccgtggatgatggctgtctgcttcgccgtgacgggatcggcctgagcttggattacttcacttactttgaattgagcttgcttcatgtctctggagagatcggtgatttttttgaggagatcggggaggtcgtcgacggcggagtcgaggagggccagccagccgaagacggcgacagtgttttctttgagggatttgcagagggagaggcagtggatgaggacgaagattttgcctttggagtaagacgacatcattttgaggtcggcgacgatgcccctgagggcgatgaggacggaaggcgacaccacatgaaaccagaaacgaagccagtatattcctctgatctccgagttgctgcgtcgtcaccggagctggaggagagagggagatggcatgggtcaaacgttggagctggaagggagagagagagggtcgtgtcgagcgccggagccagaggagagggaggactgggtcgatcgctggagcctgaggagagagagccggagcccgcggatgagcgattgggtttcagagaatttcgatcacaccccggccaagaggttctcgatcaactcaatcgagttgactcagacctccatcgaattgtggaagaggagctgggccaggaacccgactggttcgggtccgggtccaactccattgcaacgctgtcagactccgcgagggggaaaattaccagaagcgcgagcacctcgctgttcatctcgggtctggtcggcgggttgtttcagcggcggaattctctctatgccgaaagagcggttggcgacgcaccactcttggatgagtcggcggagagtgtggttggggatgagggtgaagtcggtgagttgggtccgggtgactgggcaggtggtgttgctggtggcgacccaggactcgatgctgggtccacggcgactacttggagttggaggccattgttcggggacaccatgctagtctgctccttagtccctctcagcaccaaacatgagtcagctagggttcccctcgacaaaaatcttcctcgtccggcggcgcacccgcgtcggcgtgggcctctggtcttgtcggcgtttggcgcgtgcagccggacgggcactttcctcctcggaattctcagatttctggcaactttggcaggtttcaatctcaagcgtggtctaggagagatggaagggaggtggatgtcagggtgggtagatcgatttcgatctgaccttctttggtcgtgggcgatcgtaggtgcagagtggcactggagtggggttgatcggcggcggaattggggttctcctatcagtggtgattccaaaagggatatgctgctcttttgggttcgatcactgatttgggcggaggtttggtggtgtggttggatggcaccggatcgttcgcggcgaggctggcggaggaataagcgatctgcagctctgacggtcttggcttggaagattggtggttgggccgagcttggcgggagggatcttggtaattcgccggaggttcttctaggcaattctatggattccgatgcaactgctactgagcttatttctgttcttgagcagaaacaaaaaactgggggaagaacaaaagttcttttagagactgtcccggttcataagttggcagatatatttgttgctagctttgagataagttttgaggagcaactgtctatgttagattcagttgatctaaaagtaagactttcaaaagctaccgagttagttgacaggcatttgcagtctatacatgtagcagagaagattacacagaaagttgagggtcaattatcaaaatcacaaaaagaattccttttacgccagcagatgagagctataaaggaagagctcggtgacaatgatgatgatgaagatgatgtagccgccctagaaagaaagatgcaaagcgcaggaatgccttcaaatatctggaagcatgcacagagggagttaaggaggcttaaaaagatgcaaccccagcaacctggatataatagttcacgtgtttacctggagctacttgctgatcttccctgggagaaggctactgaagaatttgagttagatttaagggttgcaaaagaacgtcttgacagtgatcactatggtttagtcaaggtcaagcagcggattattgaatatttggccgttcgtaagctcaaaccagatgccagaggccctgtgttgtgcttcgttggcccaccaggtgttgggaaaacatctttggcatcatctattgcttctgccctgggcagaaagtttatacgcatatcccttggtggtgtcaaggatgaggctgatattcgagggcataggaggacatacattggaagcatgccagggagactcattgatggattgaagagagtatctgtttgcaaccctgtcatgctgctagacgaaattgacaagaccggttctgatgtgcgtggtgatccagcttcggctctattggaggttcttgaccctgagcaaaacaaaactttcaatgatcactatttgaatgttccatttgacctttcaaaggtgatttttgtggcaactgcaaataggatgcagcctattccacctccactcttggacaggatggaagttattgagttgcctgggtatacacctgaagaaaagctgaagatagctatgcaccatttaattccgcgagttcttgatcaacacgggttaagcaccgagtttcttcaaatcccagaggcgatggtaaaacttgtcattcaggggtacaccagagaggctggtgttcggaatctggagaggaatttggctgctttggctcgtgcggcagctgtgagagttgcggagcatgaacaagctgtctcagtgagcaaagatgtgcactcgcttgcttcaccgatagtggaaagcagactagctgatggaggtgaagtggaaatggaggttattccaatgggtgcaactaatcatgagatatcaagcactttcaagatttcttcgccactgattgtggatgaggatatgctggaaaaagtattagggcctccaaggtttgatgacaaggaagctgcagaacgggttgcaacacctggtgtatctgttgggcttgtttggacttctgttggtggggaggttcagtttgtggaggctacagcaatggcgggaaagggtgaattacatctcactggtcagcttggagatgttataaaagaatcagcacagatagcactgacatgggtaagagctagggcaacagatcttatgttggcagcatcggatgaaacaaatcttctggagggtcgggatgttcatatacattttcccgctggcgctgtacctaaggatgggccctccgctggtgtgacactggtaactgcacttgtttcactgttcagtcagaaaagagtaagggcagatacagcaatgactggagaaatgacattgaggggtctcgtactaccggttggtggtatcaaggataaggtgttggcagcacaccgttgtggtattaaaagagtcattcttccagagagaaatctgaaggacttaactgaggtaccatcagcagtgcttgccggtcttgagattatagttgcaaagcgaatggaagatgtattagagcaggcttttgaaggtggatgcccttggagacagcattcaaagttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005782 GO:0006139 GO:0006259 GO:0006508 GO:0006605 GO:0006625 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009791 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015919 GO:0016043 GO:0016485 GO:0016558 GO:0016560 GO:0017038 GO:0019538 GO:0022622 GO:0031907 GO:0031974 GO:0032042 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0040007 GO:0042579 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043574 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046483 GO:0046907 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0090304 GO:0090696 GO:0099402 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA LON_substr_bdg Lon_C

Protein Analysis

1222

Amino Acids

134.39

Weight (kDa)

5.35

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	739 - 876	1.9e-25	ATPase family associated with various cellular activities (AAA)
AAA_5	PF07728	739 - 873	3.7e-07	AAA domain (dynein-related subfamily)
Lon_lid	PF22667	901 - 952	4e-17	Lon protease AAA+ ATPase lid domain
Lon_C	PF05362	1004 - 1210	1.2e-77	Lon protease (S16) C-terminal proteolytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47040
fragaria_vesca	FvH4_5g20910 FvH4_5g20910
malus_domestica	MD06G1043200.v1.1 MD16G1267600.v1.1
prunus_persica	Prupe.5G050100_v2.0.a1 Prupe.5G050100_v2.0.a1
pyrus_communis	pycom06g03620 pycom16g23700 pycom16g23710
rosa_chinensis	RchiOBHm_Chr7g0207901
rosa_laevigata	RLG00000003277
rosa_multiflora	Rmu_co8377115.1_g000001 Rmu_sc0006577.1_g000003
rosa_roxburghii	Rroxscaffold_3G00251060
rosa_rugosa	Rorug07G0100200 Rorug07G0100200
rosa_samantha	Rh7AG233500 Rh7BG229100 Rh7CG248800 Rh7DG239500
rosa_wichuraiana	Rw0G001300 Rw7G020040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3206
AarI	CACCTGC	1 cut(s)	881
AasI	GACNNNNNNGTC	1 cut(s)	158
AatII	GACGTC	1 cut(s)	14
Acc36I	ACCTGC	2 cut(s)	881, 1154
Acc65I	GGTACC	1 cut(s)	3556
AccB1I	GGYRCC	2 cut(s)	1405, 3556
AccB7I	CCANNNNNTGG	1 cut(s)	2240
AccBSI	CCGCTC	1 cut(s)	800
AccI	GTMKAC	2 cut(s)	150, 2642
AccII	CGCG	7 cut(s)	530, 701, 725, 1069, 1106, 1420, 2689
AclI	AACGTT	1 cut(s)	423
AclWI	GGATC	4 cut(s)	59, 1419, 1515, 2459
AcoI	YGGCCR	2 cut(s)	571, 2175
AcsI	RAATTY	6 cut(s)	554, 778, 1137, 1838, 2084, 2803
AcuI	CTGAAG	4 cut(s)	2100, 2670, 2681, 3560
AcvI	CACGTG	1 cut(s)	2033
AcyI	GRCGYC	1 cut(s)	11
AdeI	CACNNNGTG	2 cut(s)	2237, 3092
AfaI	GTAC	4 cut(s)	2768, 3336, 3456, 3558
AfiI	CCNNNNNNNGG	9 cut(s)	64, 705, 965, 1325, 2240, 2554, 3344, 3356, 3467
AflIII	ACRYGT	2 cut(s)	1780, 2032
AgeI	ACCGGT	2 cut(s)	2444, 3460
AjuI	GAANNNNNNNTTGG	4 cut(s)	786, 818, 2237, 2269
AleI	CACNNNNGTG	2 cut(s)	1284, 3501
AloI	GAACNNNNNNTCC	2 cut(s)	1297, 1329
Alw21I	GWGCWC	3 cut(s)	731, 1881, 2883
Alw26I	GTCTC	6 cut(s)	109, 1625, 2368, 2866, 3455, 3643
Alw44I	GTGCAC	1 cut(s)	2879
AlwI	GGATC	4 cut(s)	59, 1419, 1515, 2459
Ama87I	CYCGRG	1 cut(s)	745
ApaI	GGGCCC	1 cut(s)	3351
ApaLI	GTGCAC	1 cut(s)	2879
ApoI	RAATTY	6 cut(s)	554, 778, 1137, 1838, 2084, 2803
ArsI	GACNNNNNNTTYG	2 cut(s)	230, 262
AsiGI	ACCGGT	2 cut(s)	2444, 3460
Asp700I	GAANNNNTTC	1 cut(s)	1948
Asp718I	GGTACC	1 cut(s)	3556
AspLEI	GCGC	6 cut(s)	464, 725, 1063, 1106, 1940, 3332
AsuC2I	CCSGG	4 cut(s)	570, 667, 879, 1640
AsuNHI	GCTAGC	1 cut(s)	1670
AvaI	CYCGRG	1 cut(s)	745
AvaII	GGWCC	4 cut(s)	663, 669, 875, 930
AxyI	CCTNAGG	3 cut(s)	297, 507, 3339
BaeGI	GKGCMC	3 cut(s)	1124, 2883, 3351
BaeI	ACNNNNGTAYC	2 cut(s)	3540, 3573
BanI	GGYRCC	2 cut(s)	1405, 3556
BanII	GRGCYC	3 cut(s)	528, 1881, 3351
BauI	CACGAG	1 cut(s)	2820
BbrPI	CACGTG	1 cut(s)	2033
BbsI	GAAGAC	1 cut(s)	189
Bbv12I	GWGCWC	3 cut(s)	731, 1881, 2883
BceAI	ACGGC	5 cut(s)	27, 169, 202, 951, 2162
BcgI	CGANNNNNNTGC	6 cut(s)	230, 264, 1052, 1086, 1544, 1578
BclI	TGATCA	3 cut(s)	2128, 2521, 2698
BcnI	CCSGG	4 cut(s)	570, 667, 879, 1640
BcoDI	GTCTC	6 cut(s)	109, 1625, 2368, 2866, 3455, 3643
BfaI	CTAG	9 cut(s)	980, 1023, 1187, 1535, 1671, 1919, 2426, 2915, 3246
BfmI	CTRYAG	3 cut(s)	1449, 3069, 3150
BfoI	RGCGCY	2 cut(s)	465, 3333
BfuAI	ACCTGC	2 cut(s)	881, 1154
BglI	GCCNNNNNGGC	1 cut(s)	1119
BglII	AGATCT	1 cut(s)	3256
Bme18I	GGWCC	4 cut(s)	663, 669, 875, 930
BmeT110I	CYCGRG	1 cut(s)	745
BmrI	ACTGGG	3 cut(s)	497, 895, 1614
BmtI	GCTAGC	1 cut(s)	1674
BmuI	ACTGGG	3 cut(s)	497, 895, 1614
BpiI	GAAGAC	1 cut(s)	189
BpmI	CTGGAG	8 cut(s)	129, 413, 521, 1303, 2063, 2816, 3314, 3450
Bpu10I	CCTNAGC	2 cut(s)	59, 2499
BpuEI	CTTGAG	3 cut(s)	1160, 1607, 3602
BpuMI	CCSGG	4 cut(s)	570, 667, 879, 1640
Bsa29I	ATCGAT	1 cut(s)	1228
BsaAI	YACGTR	1 cut(s)	2033
BsaBI	GATNNNNATC	1 cut(s)	1234
BsaHI	GRCGYC	1 cut(s)	11
BsaI	GGTCTC	1 cut(s)	3455
BsaWI	WCCGGW	4 cut(s)	385, 1408, 2444, 3460
Bsc4I	CCNNNNNNNGG	9 cut(s)	64, 705, 965, 1325, 2240, 2554, 3344, 3356, 3467
Bse118I	RCCGGY	3 cut(s)	2444, 3460, 3575
Bse1I	ACTGG	9 cut(s)	347, 492, 659, 890, 1286, 1609, 3190, 3372, 3433
Bse21I	CCTNAGG	3 cut(s)	297, 507, 3339
Bse3DI	GCAATG	3 cut(s)	678, 3162, 3429
Bse8I	GATNNNNATC	1 cut(s)	1234
BseCI	ATCGAT	1 cut(s)	1228
BseJI	GATNNNNATC	1 cut(s)	1234
BseLI	CCNNNNNNNGG	9 cut(s)	64, 705, 965, 1325, 2240, 2554, 3344, 3356, 3467
BseMI	GCAATG	3 cut(s)	678, 3162, 3429
BseNI	ACTGG	9 cut(s)	347, 492, 659, 890, 1286, 1609, 3190, 3372, 3433
BseRI	GAGGAG	8 cut(s)	146, 179, 410, 489, 524, 647, 1121, 1706
BseSI	GKGCMC	3 cut(s)	1124, 2883, 3351
BseYI	CCCAGC	3 cut(s)	637, 926, 2007
BsgI	GTGCAG	3 cut(s)	1129, 1290, 3360
Bsh1236I	CGCG	7 cut(s)	530, 701, 725, 1069, 1106, 1420, 2689
Bsh1285I	CGRYCG	2 cut(s)	497, 1263
BshNI	GGYRCC	2 cut(s)	1405, 3556
BshTI	ACCGGT	2 cut(s)	2444, 3460
BshVI	ATCGAT	1 cut(s)	1228
BsiEI	CGRYCG	2 cut(s)	497, 1263
BsiHKAI	GWGCWC	3 cut(s)	731, 1881, 2883
BsiHKCI	CYCGRG	1 cut(s)	745
BslFI	GGGAC	3 cut(s)	980, 983, 1622
BslI	CCNNNNNNNGG	9 cut(s)	64, 705, 965, 1325, 2240, 2554, 3344, 3356, 3467
BsmAI	GTCTC	6 cut(s)	109, 1625, 2368, 2866, 3455, 3643
BsmFI	GGGAC	3 cut(s)	980, 983, 1622
BsmI	GAATGC	2 cut(s)	1950, 3655
Bso31I	GGTCTC	1 cut(s)	3455
BsoBI	CYCGRG	1 cut(s)	745
Bsp120I	GGGCCC	1 cut(s)	3347
Bsp1286I	GDGCHC	6 cut(s)	528, 731, 1124, 1881, 2883, 3351
BspDI	ATCGAT	1 cut(s)	1228
BspFNI	CGCG	7 cut(s)	530, 701, 725, 1069, 1106, 1420, 2689
BspHI	TCATGA	1 cut(s)	2968
BspMAI	CTGCAG	2 cut(s)	1453, 3073
BspMI	ACCTGC	2 cut(s)	881, 1154
BspOI	GCTAGC	1 cut(s)	1674
BspPI	GGATC	4 cut(s)	59, 1419, 1515, 2459
BspQI	GCTCTTC	1 cut(s)	1869
BspT107I	GGYRCC	2 cut(s)	1405, 3556
BspTNI	GGTCTC	1 cut(s)	3455
BsrBI	CCGCTC	1 cut(s)	800
BsrDI	GCAATG	3 cut(s)	678, 3162, 3429
BsrFI	RCCGGY	3 cut(s)	2444, 3460, 3575
BsrI	ACTGG	9 cut(s)	347, 492, 659, 890, 1286, 1609, 3190, 3372, 3433
BssAI	RCCGGY	3 cut(s)	2444, 3460, 3575
BssNAI	GTATAC	1 cut(s)	2643
BssNI	GRCGYC	1 cut(s)	11
BssSI	CACGAG	1 cut(s)	2820
BssT1I	CCWWGG	3 cut(s)	2305, 3047, 3644
Bst1107I	GTATAC	1 cut(s)	2643
Bst2BI	CACGAG	1 cut(s)	2820
Bst4CI	ACNGT	7 cut(s)	194, 1462, 1636, 1701, 2126, 3390, 3500
Bst6I	CTCTTC	3 cut(s)	624, 1869, 2387
BstACI	GRCGYC	1 cut(s)	11
BstAPI	GCANNNNNTGC	1 cut(s)	3572
BstBAI	YACGTR	1 cut(s)	2033
BstDSI	CCRYGG	3 cut(s)	18, 528, 933
BstENI	CCTNNNNNAGG	1 cut(s)	2552
BstFNI	CGCG	7 cut(s)	530, 701, 725, 1069, 1106, 1420, 2689
BstH2I	RGCGCY	2 cut(s)	465, 3333
BstHHI	GCGC	6 cut(s)	464, 725, 1063, 1106, 1940, 3332
BstMAI	GTCTC	6 cut(s)	109, 1625, 2368, 2866, 3455, 3643
BstMCI	CGRYCG	2 cut(s)	497, 1263
BstNSI	RCATGY	3 cut(s)	1784, 1970, 2368
BstSFI	CTRYAG	3 cut(s)	1449, 3069, 3150
BstSLI	GKGCMC	3 cut(s)	1124, 2883, 3351
BstUI	CGCG	7 cut(s)	530, 701, 725, 1069, 1106, 1420, 2689
BstV2I	GAAGAC	1 cut(s)	189
BstX2I	RGATCY	2 cut(s)	1507, 3256
BstXI	CCANNNNNNTGG	1 cut(s)	2015
BstYI	RGATCY	2 cut(s)	1507, 3256
BstZ17I	GTATAC	1 cut(s)	2643
Bsu15I	ATCGAT	1 cut(s)	1228
Bsu36I	CCTNAGG	3 cut(s)	297, 507, 3339
BsuTUI	ATCGAT	1 cut(s)	1228
BtgI	CCRYGG	3 cut(s)	18, 528, 933
BtgZI	GCGATG	2 cut(s)	318, 2756
BtsI	GCAGTG	2 cut(s)	234, 3573
BveI	ACCTGC	2 cut(s)	881, 1154
CciI	TCATGA	1 cut(s)	2968
CfoI	GCGC	6 cut(s)	464, 725, 1063, 1106, 1940, 3332
Cfr10I	RCCGGY	3 cut(s)	2444, 3460, 3575
Cfr42I	CCGCGG	1 cut(s)	531
ClaI	ATCGAT	1 cut(s)	1228
CseI	GACGC	3 cut(s)	366, 818, 1058
CsiI	ACCWGGT	2 cut(s)	2233, 3088
Csp6I	GTAC	4 cut(s)	2767, 3335, 3455, 3557
CspAI	ACCGGT	2 cut(s)	2444, 3460
CviQI	GTAC	4 cut(s)	2767, 3335, 3455, 3557
DraIII	CACNNNGTG	2 cut(s)	2237, 3092
DrdI	GACNNNNNNGTC	1 cut(s)	158
DseDI	GACNNNNNNGTC	1 cut(s)	158
EaeI	YGGCCR	2 cut(s)	571, 2175
Eam1104I	CTCTTC	3 cut(s)	624, 1869, 2387
EarI	CTCTTC	3 cut(s)	624, 1869, 2387
EciI	GGCGGA	6 cut(s)	171, 790, 848, 1318, 1394, 1447
Ecl136II	GAGCTC	1 cut(s)	1879
Eco130I	CCWWGG	3 cut(s)	2305, 3047, 3644
Eco24I	GRGCYC	3 cut(s)	528, 1881, 3351
Eco31I	GGTCTC	1 cut(s)	3455
Eco32I	GATATC	1 cut(s)	2976
Eco47I	GGWCC	4 cut(s)	663, 669, 875, 930
Eco53kI	GAGCTC	1 cut(s)	1879
Eco57I	CTGAAG	4 cut(s)	2100, 2670, 2681, 3560
Eco72I	CACGTG	1 cut(s)	2033
Eco81I	CCTNAGG	3 cut(s)	297, 507, 3339
Eco88I	CYCGRG	1 cut(s)	745
EcoICRI	GAGCTC	1 cut(s)	1879
EcoNI	CCTNNNNNAGG	1 cut(s)	2552
EcoO109I	RGGNCCY	3 cut(s)	2207, 3041, 3348
EcoRI	GAATTC	3 cut(s)	778, 1137, 1838
EcoRV	GATATC	1 cut(s)	2976
EcoT14I	CCWWGG	3 cut(s)	2305, 3047, 3644
EcoT38I	GRGCYC	3 cut(s)	528, 1881, 3351
ErhI	CCWWGG	3 cut(s)	2305, 3047, 3644
FalI	AAGNNNNNCTT	6 cut(s)	1719, 1751, 1827, 1859, 2103, 2135
FaqI	GGGAC	3 cut(s)	980, 983, 1622
FauI	CCCGC	6 cut(s)	535, 752, 1074, 1493, 3154, 3331
FbaI	TGATCA	3 cut(s)	2128, 2521, 2698
FblI	GTMKAC	2 cut(s)	150, 2642
FriOI	GRGCYC	3 cut(s)	528, 1881, 3351
FspBI	CTAG	9 cut(s)	980, 1023, 1187, 1535, 1671, 1919, 2426, 2915, 3246
GlaI	GCGC	6 cut(s)	463, 724, 1062, 1105, 1939, 3331
GsaI	CCCAGC	3 cut(s)	641, 930, 2011
GsuI	CTGGAG	8 cut(s)	129, 413, 521, 1303, 2063, 2816, 3314, 3450
HaeII	RGCGCY	2 cut(s)	465, 3333
HgaI	GACGC	3 cut(s)	366, 818, 1058
HhaI	GCGC	6 cut(s)	464, 725, 1063, 1106, 1940, 3332
Hin1I	GRCGYC	1 cut(s)	11
Hin6I	GCGC	6 cut(s)	462, 723, 1061, 1104, 1938, 3330
HinP1I	GCGC	6 cut(s)	462, 723, 1061, 1104, 1938, 3330
HincII	GTYRAC	3 cut(s)	151, 604, 1759
HindII	GTYRAC	3 cut(s)	151, 604, 1759
Hpy166II	GTNNAC	9 cut(s)	151, 604, 933, 1759, 2030, 2038, 2643, 2769, 2881
Hpy8I	GTNNAC	9 cut(s)	151, 604, 933, 1759, 2030, 2038, 2643, 2769, 2881
Hpy99I	CGWCG	6 cut(s)	152, 155, 290, 382, 812, 1074
HpyAV	CCTTC	8 cut(s)	309, 429, 1193, 1253, 1959, 2065, 3535, 3626
HpyCH4III	ACNGT	7 cut(s)	194, 1462, 1636, 1701, 2126, 3390, 3500
HpyCH4IV	ACGT	4 cut(s)	11, 423, 2032, 2116
HpySE526I	ACGT	4 cut(s)	11, 423, 2032, 2116
Hsp92I	GRCGYC	1 cut(s)	11
HspAI	GCGC	6 cut(s)	462, 723, 1061, 1104, 1938, 3330
KpnI	GGTACC	1 cut(s)	3560
Ksp22I	TGATCA	3 cut(s)	2128, 2521, 2698
KspI	CCGCGG	1 cut(s)	531
LguI	GCTCTTC	1 cut(s)	1869
MabI	ACCWGGT	2 cut(s)	2233, 3088
MaeI	CTAG	9 cut(s)	980, 1023, 1187, 1535, 1671, 1919, 2426, 2915, 3246
MaeII	ACGT	4 cut(s)	11, 423, 2032, 2116
MaeIII	GTNAC	7 cut(s)	3, 44, 381, 881, 1883, 3361, 3370
MbiI	CCGCTC	1 cut(s)	800
MflI	RGATCY	2 cut(s)	1507, 3256
MhlI	GDGCHC	6 cut(s)	528, 731, 1124, 1881, 2883, 3351
MlyI	GAGTC	8 cut(s)	168, 599, 689, 836, 912, 1025, 2370, 3525
MmeI	TCCRAC	4 cut(s)	406, 696, 932, 1379
MroXI	GAANNNNTTC	1 cut(s)	1948
MseI	TTAA	7 cut(s)	1982, 1992, 2099, 2681, 2711, 3510, 3548
MslI	CAYNNNNRTG	3 cut(s)	1284, 3232, 3501
MspA1I	CMGCKG	6 cut(s)	530, 772, 2158, 2831, 3326, 3356
Mva1269I	GAATGC	2 cut(s)	1950, 3655
MvnI	CGCG	7 cut(s)	530, 701, 725, 1069, 1106, 1420, 2689
NciI	CCSGG	4 cut(s)	570, 667, 879, 1640
NheI	GCTAGC	1 cut(s)	1670
NmeAIII	GCCGAG	1 cut(s)	1516
NmuCI	GTSAC	6 cut(s)	3, 44, 381, 881, 1883, 3361
NspI	RCATGY	3 cut(s)	1784, 1970, 2368
OliI	CACNNNNGTG	2 cut(s)	1284, 3501
PaeI	GCATGC	2 cut(s)	1970, 2368
PagI	TCATGA	1 cut(s)	2968
PaqCI	CACCTGC	1 cut(s)	881
PasI	CCCWGGG	2 cut(s)	2064, 2278
PciI	ACATGT	1 cut(s)	1780
PciSI	GCTCTTC	1 cut(s)	1869
PcsI	WCGNNNNNNNCGW	3 cut(s)	144, 159, 1420
PctI	GAATGC	2 cut(s)	1950, 3655
PdmI	GAANNNNTTC	1 cut(s)	1948
PfeI	GAWTC	5 cut(s)	1331, 1550, 1712, 2791, 3212
PflFI	GACNNNGTC	1 cut(s)	489
PflMI	CCANNNNNTGG	1 cut(s)	2240
PinAI	ACCGGT	2 cut(s)	2444, 3460
Ple19I	CGATCG	2 cut(s)	497, 1263
PleI	GAGTC	8 cut(s)	167, 599, 689, 835, 912, 1024, 2370, 3524
PmaCI	CACGTG	1 cut(s)	2033
PmlI	CACGTG	1 cut(s)	2033
PpsI	GAGTC	8 cut(s)	167, 599, 689, 835, 912, 1024, 2370, 3524
Ppu21I	YACGTR	1 cut(s)	2033
PscI	ACATGT	1 cut(s)	1780
PsiI	TTATAA	1 cut(s)	3206
Psp124BI	GAGCTC	1 cut(s)	1881
Psp1406I	AACGTT	1 cut(s)	423
PspCI	CACGTG	1 cut(s)	2033
PspFI	CCCAGC	3 cut(s)	637, 926, 2007
PspOMI	GGGCCC	1 cut(s)	3347
PstI	CTGCAG	2 cut(s)	1453, 3073
PsuI	RGATCY	2 cut(s)	1507, 3256
PsyI	GACNNNGTC	1 cut(s)	489
PvuI	CGATCG	2 cut(s)	497, 1263
PvuII	CAGCTG	1 cut(s)	2831
RsaI	GTAC	4 cut(s)	2768, 3336, 3456, 3558
RsaNI	GTAC	4 cut(s)	2767, 3335, 3455, 3557
RseI	CAYNNNNRTG	3 cut(s)	1284, 3232, 3501
SacI	GAGCTC	1 cut(s)	1881
SacII	CCGCGG	1 cut(s)	531
SalI	GTCGAC	1 cut(s)	149
SapI	GCTCTTC	1 cut(s)	1869
SaqAI	TTAA	7 cut(s)	1982, 1992, 2099, 2681, 2711, 3510, 3548
SchI	GAGTC	8 cut(s)	168, 599, 689, 836, 912, 1025, 2370, 3525
SduI	GDGCHC	6 cut(s)	528, 731, 1124, 1881, 2883, 3351
SexAI	ACCWGGT	2 cut(s)	2233, 3088
SfcI	CTRYAG	3 cut(s)	1449, 3069, 3150
Sfr303I	CCGCGG	1 cut(s)	531
SgrBI	CCGCGG	1 cut(s)	531
SgrDI	CGTCGACG	1 cut(s)	149
SinI	GGWCC	4 cut(s)	663, 669, 875, 930
SmiMI	CAYNNNNRTG	3 cut(s)	1284, 3232, 3501
SmlI	CTYRAG	3 cut(s)	1175, 1586, 3581
SmoI	CTYRAG	3 cut(s)	1175, 1586, 3581
SphI	GCATGC	2 cut(s)	1970, 2368
SspI	AATATT	1 cut(s)	2171
SspMI	CTAG	9 cut(s)	980, 1023, 1187, 1535, 1671, 1919, 2426, 2915, 3246
SstI	GAGCTC	1 cut(s)	1881
StyI	CCWWGG	3 cut(s)	2305, 3047, 3644
TaaI	ACNGT	7 cut(s)	194, 1462, 1636, 1701, 2126, 3390, 3500
TaiI	ACGT	4 cut(s)	14, 426, 2035, 2119
TauI	GCSGC	6 cut(s)	775, 1061, 1303, 1423, 1916, 2828
TfiI	GAWTC	5 cut(s)	1331, 1550, 1712, 2791, 3212
Tru1I	TTAA	7 cut(s)	1982, 1992, 2099, 2681, 2711, 3510, 3548
Tru9I	TTAA	7 cut(s)	1982, 1992, 2099, 2681, 2711, 3510, 3548
TseFI	GTSAC	6 cut(s)	3, 44, 381, 881, 1883, 3361
Tsp45I	GTSAC	6 cut(s)	3, 44, 381, 881, 1883, 3361
TspDTI	ATGAA	8 cut(s)	89, 344, 730, 1634, 1914, 2865, 3294, 3299
TspGWI	ACGGA	2 cut(s)	7, 327
Tth111I	GACNNNGTC	1 cut(s)	489
Van91I	CCANNNNNTGG	1 cut(s)	2240
VneI	GTGCAC	1 cut(s)	2879
VpaK11BI	GGWCC	4 cut(s)	663, 669, 875, 930
XagI	CCTNNNNNAGG	1 cut(s)	2552
XapI	RAATTY	6 cut(s)	554, 778, 1137, 1838, 2084, 2803
XceI	RCATGY	3 cut(s)	1784, 1970, 2368
XmiI	GTMKAC	2 cut(s)	150, 2642
XmnI	GAANNNNTTC	1 cut(s)	1948
XspI	CTAG	9 cut(s)	980, 1023, 1187, 1535, 1671, 1919, 2426, 2915, 3246
ZraI	GACGTC	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.