Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006646.1

Orthogroup ID

OG0006868

Physical Location & Seq

Genomic Coordinates Reverse (-)

4926 .. 5571

Gene Structure 646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atgactaagagtgaagttgatcatctcgaggatggctaccgttggcggaaatatggacagaaggctgttaagaatagcccatatccaaggagctactatcggtgcacaaatagcaaatgcactgtgaagaaaagggttgaacgttcctctgaagatccaacgacggtaattacgacgtatgaagggcaacactgtcatcataccgttgcatttccccgcggcggcgggggagtgaatattattagtcatgatcaatctggctttgccgcaggaagccagttaatgcagcttcctccagtttcgcagttcatgcattatccaacttcaattcaacccagatcacaaattagtccaactcataatttgacagtaggagggtcgcagtcgcaccgattagtccgggctggcggtactcattaccatcatgatcaagcagctgggggatcccagtgcattattaatccaaatcatgagccactcccagtagtaccagttcctacagatgaagggcttcttggggacattgtacctcctggaatgcgtaatccgttcgatggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043565 GO:0044212 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

186

Amino Acids

20.47

Weight (kDa)

8.7

Isoelectric Point (pI)

70.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	10 - 66	3.9e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69310 AT1G69310 AT1G69310 AT1G69310
fragaria_vesca	FvH4_4g30360 FvH4_4g30360 FvH4_4g30360 FvH4_4g30360 FvH4_4g30360
malus_domestica	MD13G1064700.v1.1 MD16G1063200.v1.1
prunus_persica	Prupe.1G283500_v2.0.a1
pyrus_communis	pycom16g05540
rosa_chinensis	RchiOBHm_Chr4g0438661
rosa_laevigata	RLG00000006343
rosa_multiflora	Rmu_co8519545.1_g000001 Rmu_sc0006646.1_g000001 Rmu_sc0006646.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379660
rosa_rugosa	Rorug04G0312400
rosa_samantha	Rh4AG362800 Rh4BG374100 Rh4CG388100 Rh4DG368800
rosa_wichuraiana	Rw0G007130 Rw0G016680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	219
AciI	CCGC	7 cut(s)	46, 217, 219, 222, 225, 267, 408
AclI	AACGTT	1 cut(s)	142
AclWI	GGATC	3 cut(s)	149, 438, 451
AcuI	CTGAAG	1 cut(s)	171
AfaI	GTAC	3 cut(s)	412, 489, 528
AfiI	CCNNNNNNNGG	2 cut(s)	221, 554
AgsI	TTSAA	3 cut(s)	140, 327, 332
AjnI	CCWGG	1 cut(s)	532
AjuI	GAANNNNNNNTTGG	2 cut(s)	498, 530
AluBI	AGCT	3 cut(s)	93, 289, 437
AluI	AGCT	3 cut(s)	93, 289, 437
Alw21I	GWGCWC	1 cut(s)	107
Alw44I	GTGCAC	1 cut(s)	103
AlwI	GGATC	3 cut(s)	149, 438, 451
Ama87I	CYCGRG	1 cut(s)	26
ApaLI	GTGCAC	1 cut(s)	103
ApeKI	GCWGC	2 cut(s)	286, 434
AseI	ATTAAT	1 cut(s)	459
Asp700I	GAANNNNTTC	1 cut(s)	510
AsuC2I	CCSGG	1 cut(s)	401
AvaI	CYCGRG	1 cut(s)	26
BaeGI	GKGCMC	1 cut(s)	107
BamHI	GGATCC	1 cut(s)	443
Bbv12I	GWGCWC	1 cut(s)	107
BbvI	GCAGC	2 cut(s)	298, 446
BccI	CCATC	3 cut(s)	26, 429, 548
BciT130I	CCWGG	1 cut(s)	534
BclI	TGATCA	3 cut(s)	19, 250, 427
BcnI	CCSGG	1 cut(s)	401
BfmI	CTRYAG	1 cut(s)	498
BisI	GCNGC	5 cut(s)	220, 223, 267, 287, 435
BlsI	GCNGC	5 cut(s)	221, 224, 268, 288, 436
Bme1390I	CCNGG	2 cut(s)	401, 534
BmeT110I	CYCGRG	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	445
BmrFI	CCNGG	2 cut(s)	401, 534
BmrI	ACTGGG	2 cut(s)	442, 476
BmuI	ACTGGG	2 cut(s)	442, 476
BpmI	CTGGAG	1 cut(s)	279
BpuMI	CCSGG	1 cut(s)	401
BsaJI	CCNNGG	2 cut(s)	86, 217
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 554
Bse1I	ACTGG	5 cut(s)	277, 296, 448, 482, 491
BseBI	CCWGG	1 cut(s)	534
BseDI	CCNNGG	2 cut(s)	86, 217
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	2 cut(s)	221, 554
BseNI	ACTGG	5 cut(s)	277, 296, 448, 482, 491
BseSI	GKGCMC	1 cut(s)	107
BseXI	GCAGC	2 cut(s)	298, 446
BseYI	CCCAGC	1 cut(s)	437
Bsh1236I	CGCG	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	107
BsiHKCI	CYCGRG	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	400
BslFI	GGGAC	1 cut(s)	533
BslI	CCNNNNNNNGG	2 cut(s)	221, 554
BsmFI	GGGAC	1 cut(s)	533
BsmI	GAATGC	1 cut(s)	543
BsoBI	CYCGRG	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp143I	GATC	6 cut(s)	19, 154, 250, 338, 427, 443
BspACI	CCGC	7 cut(s)	46, 217, 219, 222, 225, 267, 408
BspFNI	CGCG	1 cut(s)	219
BspHI	TCATGA	3 cut(s)	247, 424, 469
BspLI	GGNNCC	1 cut(s)	445
BspPI	GGATC	3 cut(s)	149, 438, 451
BsrI	ACTGG	5 cut(s)	277, 296, 448, 482, 491
BssECI	CCNNGG	2 cut(s)	86, 217
BssMI	GATC	6 cut(s)	19, 154, 250, 338, 427, 443
BssT1I	CCWWGG	1 cut(s)	86
Bst2UI	CCWGG	1 cut(s)	534
Bst4CI	ACNGT	6 cut(s)	41, 124, 166, 194, 205, 370
BstAPI	GCANNNNNTGC	1 cut(s)	310
BstC8I	GCNNGC	1 cut(s)	406
BstDEI	CTNAG	1 cut(s)	6
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	1 cut(s)	37
BstFNI	CGCG	1 cut(s)	219
BstKTI	GATC	6 cut(s)	22, 157, 253, 341, 430, 446
BstMBI	GATC	6 cut(s)	19, 154, 250, 338, 427, 443
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 310
BstNI	CCWGG	1 cut(s)	534
BstSCI	CCNGG	2 cut(s)	399, 532
BstSFI	CTRYAG	1 cut(s)	498
BstSLI	GKGCMC	1 cut(s)	107
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	2 cut(s)	298, 446
BstX2I	RGATCY	2 cut(s)	154, 443
BstYI	RGATCY	2 cut(s)	154, 443
BtgI	CCRYGG	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	37
BtsIMutI	CAGTG	3 cut(s)	120, 190, 455
Cac8I	GCNNGC	1 cut(s)	406
CciI	TCATGA	3 cut(s)	247, 424, 469
Cfr42I	CCGCGG	1 cut(s)	220
Csp6I	GTAC	3 cut(s)	411, 488, 527
CviAII	CATG	4 cut(s)	248, 310, 425, 470
CviQI	GTAC	3 cut(s)	411, 488, 527
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	6 cut(s)	21, 156, 252, 340, 429, 445
DpnII	GATC	6 cut(s)	19, 154, 250, 338, 427, 443
EciI	GGCGGA	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	532
EcoT14I	CCWWGG	1 cut(s)	86
EcoT22I	ATGCAT	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	86
FaeI	CATG	4 cut(s)	251, 313, 428, 473
FaiI	YATR	9 cut(s)	54, 82, 180, 201, 249, 311, 360, 426, 471
FalI	AAGNNNNNCTT	2 cut(s)	498, 530
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	4 cut(s)	247, 309, 424, 469
FauI	CCCGC	2 cut(s)	218, 224
FbaI	TGATCA	3 cut(s)	19, 250, 427
Fnu4HI	GCNGC	5 cut(s)	220, 223, 267, 287, 435
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	5 cut(s)	220, 223, 267, 287, 435
GluI	GCNGC	5 cut(s)	220, 223, 267, 287, 435
GsaI	CCCAGC	1 cut(s)	441
GsuI	CTGGAG	1 cut(s)	279
HapII	CCGG	1 cut(s)	400
Hin1II	CATG	4 cut(s)	251, 313, 428, 473
HpaII	CCGG	1 cut(s)	400
Hpy166II	GTNNAC	1 cut(s)	105
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	4 cut(s)	26, 248, 425, 470
Hpy8I	GTNNAC	1 cut(s)	105
Hpy99I	CGWCG	2 cut(s)	166, 178
HpyAV	CCTTC	3 cut(s)	55, 176, 500
HpyCH4III	ACNGT	6 cut(s)	41, 124, 166, 194, 205, 370
HpyCH4IV	ACGT	2 cut(s)	142, 176
HpyCH4V	TGCA	6 cut(s)	105, 120, 209, 286, 313, 453
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 310
HpyF3I	CTNAG	1 cut(s)	6
HpySE526I	ACGT	2 cut(s)	142, 176
Hsp92II	CATG	4 cut(s)	251, 313, 428, 473
Ksp22I	TGATCA	3 cut(s)	19, 250, 427
KspI	CCGCGG	1 cut(s)	220
Kzo9I	GATC	6 cut(s)	19, 154, 250, 338, 427, 443
LmnI	GCTCC	1 cut(s)	90
Lsp1109I	GCAGC	2 cut(s)	298, 446
MaeII	ACGT	2 cut(s)	142, 176
MalI	GATC	6 cut(s)	21, 156, 252, 340, 429, 445
MboI	GATC	6 cut(s)	19, 154, 250, 338, 427, 443
MboII	GAAGA	2 cut(s)	139, 164
MflI	RGATCY	2 cut(s)	154, 443
MhlI	GDGCHC	1 cut(s)	107
MluCI	AATT	4 cut(s)	168, 327, 345, 361
MmeI	TCCRAC	3 cut(s)	182, 344, 377
MnlI	CCTC	5 cut(s)	22, 157, 303, 368, 540
Mph1103I	ATGCAT	1 cut(s)	315
MroXI	GAANNNNTTC	1 cut(s)	510
MseI	TTAA	3 cut(s)	69, 281, 459
MspA1I	CMGCKG	2 cut(s)	219, 437
MspI	CCGG	1 cut(s)	400
MspR9I	CCNGG	2 cut(s)	401, 534
Mva1269I	GAATGC	1 cut(s)	543
MvaI	CCWGG	1 cut(s)	534
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	2 cut(s)	111, 310
NciI	CCSGG	1 cut(s)	401
NdeII	GATC	6 cut(s)	19, 154, 250, 338, 427, 443
NlaIII	CATG	4 cut(s)	251, 313, 428, 473
NlaIV	GGNNCC	1 cut(s)	445
NsiI	ATGCAT	1 cut(s)	315
PaeR7I	CTCGAG	1 cut(s)	26
PagI	TCATGA	3 cut(s)	247, 424, 469
PcsI	WCGNNNNNNNCGW	1 cut(s)	170
PctI	GAATGC	1 cut(s)	543
PdmI	GAANNNNTTC	1 cut(s)	510
PfoI	TCCNGGA	1 cut(s)	532
PkrI	GCNGC	5 cut(s)	221, 224, 268, 288, 436
PshBI	ATTAAT	1 cut(s)	459
Psp1406I	AACGTT	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	532
PspFI	CCCAGC	1 cut(s)	437
PspGI	CCWGG	1 cut(s)	532
PspN4I	GGNNCC	1 cut(s)	445
PsrI	GAACNNNNNNTAC	2 cut(s)	477, 509
PsuI	RGATCY	2 cut(s)	154, 443
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	3 cut(s)	412, 489, 528
RsaNI	GTAC	3 cut(s)	411, 488, 527
SacII	CCGCGG	1 cut(s)	220
SaqAI	TTAA	3 cut(s)	69, 281, 459
SatI	GCNGC	5 cut(s)	220, 223, 267, 287, 435
Sau3AI	GATC	6 cut(s)	19, 154, 250, 338, 427, 443
ScrFI	CCNGG	2 cut(s)	401, 534
SduI	GDGCHC	1 cut(s)	107
SetI	ASST	6 cut(s)	95, 145, 179, 291, 439, 532
SfcI	CTRYAG	1 cut(s)	498
Sfr274I	CTCGAG	1 cut(s)	26
Sfr303I	CCGCGG	1 cut(s)	220
SgrBI	CCGCGG	1 cut(s)	220
SlaI	CTCGAG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	4 cut(s)	168, 327, 345, 361
SsiI	CCGC	7 cut(s)	46, 217, 219, 222, 225, 267, 408
SspI	AATATT	1 cut(s)	238
StyD4I	CCNGG	2 cut(s)	399, 532
StyI	CCWWGG	1 cut(s)	86
TaaI	ACNGT	6 cut(s)	41, 124, 166, 194, 205, 370
TaiI	ACGT	2 cut(s)	145, 179
TaqI	TCGA	2 cut(s)	27, 552
TasI	AATT	4 cut(s)	168, 327, 345, 361
TauI	GCSGC	3 cut(s)	222, 225, 269
Tru1I	TTAA	3 cut(s)	69, 281, 459
Tru9I	TTAA	3 cut(s)	69, 281, 459
TscAI	CASTG	3 cut(s)	127, 197, 455
TseI	GCWGC	2 cut(s)	286, 434
TspDTI	ATGAA	3 cut(s)	195, 298, 519
TspGWI	ACGGA	1 cut(s)	537
TspRI	CASTG	3 cut(s)	127, 197, 455
VneI	GTGCAC	1 cut(s)	103
VspI	ATTAAT	1 cut(s)	459
XhoI	CTCGAG	1 cut(s)	26
XmnI	GAANNNNTTC	1 cut(s)	510
Zsp2I	ATGCAT	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.