Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006688.1

Orthogroup ID

OG0014572

Physical Location & Seq

Genomic Coordinates Forward (+)

31543 .. 32484

Gene Structure 942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atggactcttcgtcaccactatccggcgacatcttaacatgctcaaggcccttgatagagagaaggttgaggccaccacatgaccaatccctcaagtgccctaggtgcgactccacccacaccaagttctgctactacaataactacagcctctctcagcctaggtacttctgcaagacctgtagaaggtactggaccaaaggaggtacactcagaaacattcctgttggtggtggttgtagaaagaacaagaaggttgcttccaagaaacccaatgaagatcacagtccctccatgaaccctaaccatcttgggtcgtcatcttcgtcttctcaacacaaccctactgatctccagctctcgttcccggaccagatgcagttttcgcatctgaataacttgatgcttggtgctcaagggacaggaaaccctaatttcatggatggcaggtatggtaacattaacggtatgcttgagaattcaaaccagttgaggccaattgacttcatggagagtaagttggaagctatagtggggaatgctaggaactatgatttcatggggagtggtggtgatggtttgggtatggtaggtggccttagtaatatgggggctcatggactggaatctggcttccatggtttttgttctagtccatttggatcaatgtctcttgatcatcatgggaataacaatgggactaatttcatggacacttgccagaggttaatgttgccatatgaagcaaatgaggatcatcaccatcatcaaaatgaaattcatgatgtgaagccaaacactaagctcttgtctcttgagtggcaagaccaaggctgctcagacgccggaaaagaatcatcatatgggtacctcaatggtctcggaacatggacaggcgtgatgaacaactacgggccatccacgacgaactcattagtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048507 GO:0048508 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

313

Amino Acids

34.57

Weight (kDa)

6.93

Isoelectric Point (pI)

36.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	28 - 85	5.8e-34	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62940
fragaria_vesca	FvH4_5g05330
malus_domestica	MD06G1173600.v1.1 MD14G1180100.v1.1
prunus_persica	Prupe.5G173100_v2.0.a1
pyrus_communis	pycom06g15480 pycom14g14990
rosa_chinensis	RchiOBHm_Chr7g0193511
rosa_laevigata	RLG00000004265
rosa_multiflora	Rmu_sc0006688.1_g000002
rosa_roxburghii	Rroxscaffold_3G00262040
rosa_rugosa	Rorug07G0009900
rosa_samantha	Rh7AG136800 Rh7BG137100 Rh7CG140400 Rh7DG138200
rosa_wichuraiana	Rw7G011650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	438
Acc65I	GGTACC	1 cut(s)	867
AccB1I	GGYRCC	1 cut(s)	867
AclWI	GGATC	2 cut(s)	670, 762
AcsI	RAATTY	2 cut(s)	478, 777
AcyI	GRCGYC	1 cut(s)	843
AfaI	GTAC	4 cut(s)	167, 191, 208, 869
AfiI	CCNNNNNNNGG	3 cut(s)	23, 186, 230
AgsI	TTSAA	1 cut(s)	483
AhdI	GACNNNNNGTC	1 cut(s)	10
AluBI	AGCT	3 cut(s)	358, 527, 805
AluI	AGCT	3 cut(s)	358, 527, 805
Alw21I	GWGCWC	1 cut(s)	415
Alw26I	GTCTC	3 cut(s)	675, 816, 884
AlwI	GGATC	2 cut(s)	670, 762
AoxI	GGCC	5 cut(s)	47, 71, 494, 595, 914
ApeKI	GCWGC	1 cut(s)	834
ApoI	RAATTY	2 cut(s)	478, 777
Asp718I	GGTACC	1 cut(s)	867
AspA2I	CCTAGG	2 cut(s)	101, 161
AspS9I	GGNCC	4 cut(s)	48, 195, 370, 914
AsuC2I	CCSGG	1 cut(s)	368
AsuHPI	GGTGA	3 cut(s)	6, 584, 752
AvaII	GGWCC	2 cut(s)	195, 370
AvrII	CCTAGG	2 cut(s)	101, 161
BaeGI	GKGCMC	1 cut(s)	101
BanI	GGYRCC	1 cut(s)	867
BanII	GRGCYC	1 cut(s)	616
BbsI	GAAGAC	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	415
BbvI	GCAGC	1 cut(s)	821
BccI	CCATC	5 cut(s)	315, 437, 569, 771, 925
BclI	TGATCA	1 cut(s)	676
BcnI	CCSGG	1 cut(s)	368
BcoDI	GTCTC	3 cut(s)	675, 816, 884
BfaI	CTAG	4 cut(s)	102, 162, 543, 651
BfmI	CTRYAG	3 cut(s)	145, 181, 528
BfuAI	ACCTGC	1 cut(s)	438
BisI	GCNGC	1 cut(s)	835
BlnI	CCTAGG	2 cut(s)	101, 161
BlsI	GCNGC	1 cut(s)	836
Bme1390I	CCNGG	1 cut(s)	368
Bme18I	GGWCC	2 cut(s)	195, 370
BmeRI	GACNNNNNGTC	1 cut(s)	10
BmgT120I	GGNCC	4 cut(s)	48, 195, 370, 914
BmiI	GGNNCC	1 cut(s)	869
BmrFI	CCNGG	1 cut(s)	368
BmsI	GCATC	3 cut(s)	366, 393, 397
BpiI	GAAGAC	1 cut(s)	321
BplI	GAGNNNNNCTC	2 cut(s)	195, 227
BpmI	CTGGAG	1 cut(s)	338
BpuEI	CTTGAG	5 cut(s)	28, 77, 399, 494, 836
BpuMI	CCSGG	1 cut(s)	368
BsaHI	GRCGYC	1 cut(s)	843
BsaI	GGTCTC	1 cut(s)	884
BsaJI	CCNNGG	4 cut(s)	101, 161, 637, 829
BsaXI	ACNNNNNCTCC	6 cut(s)	275, 305, 503, 533, 556, 586
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 186, 230
Bse1I	ACTGG	3 cut(s)	197, 487, 627
BseDI	CCNNGG	4 cut(s)	101, 161, 637, 829
BseGI	GGATG	2 cut(s)	448, 917
BseLI	CCNNNNNNNGG	3 cut(s)	23, 186, 230
BseMII	CTCAG	3 cut(s)	170, 226, 852
BseNI	ACTGG	3 cut(s)	197, 487, 627
BseSI	GKGCMC	1 cut(s)	101
BseXI	GCAGC	1 cut(s)	821
BshFI	GGCC	5 cut(s)	49, 73, 496, 597, 916
BshNI	GGYRCC	1 cut(s)	867
BsiHKAI	GWGCWC	1 cut(s)	415
BsiSI	CCGG	3 cut(s)	24, 368, 846
BslFI	GGGAC	3 cut(s)	273, 433, 712
BslI	CCNNNNNNNGG	3 cut(s)	23, 186, 230
BsmAI	GTCTC	3 cut(s)	675, 816, 884
BsmFI	GGGAC	3 cut(s)	273, 433, 712
BsmI	GAATGC	1 cut(s)	544
BsnI	GGCC	5 cut(s)	49, 73, 496, 597, 916
Bso31I	GGTCTC	1 cut(s)	884
Bsp1286I	GDGCHC	3 cut(s)	101, 415, 616
Bsp143I	GATC	5 cut(s)	280, 349, 662, 676, 754
Bsp19I	CCATGG	1 cut(s)	637
BspANI	GGCC	5 cut(s)	49, 73, 496, 597, 916
BspCNI	CTCAG	3 cut(s)	169, 225, 851
BspHI	TCATGA	1 cut(s)	781
BspLI	GGNNCC	1 cut(s)	869
BspMI	ACCTGC	1 cut(s)	438
BspPI	GGATC	2 cut(s)	670, 762
BspT107I	GGYRCC	1 cut(s)	867
BspTNI	GGTCTC	1 cut(s)	884
BsrI	ACTGG	3 cut(s)	197, 487, 627
BssECI	CCNNGG	4 cut(s)	101, 161, 637, 829
BssMI	GATC	5 cut(s)	280, 349, 662, 676, 754
BssNI	GRCGYC	1 cut(s)	843
BssT1I	CCWWGG	4 cut(s)	101, 161, 637, 829
Bst4CI	ACNGT	2 cut(s)	287, 467
Bst6I	CTCTTC	1 cut(s)	13
BstACI	GRCGYC	1 cut(s)	843
BstDEI	CTNAG	5 cut(s)	156, 212, 599, 801, 838
BstDSI	CCRYGG	1 cut(s)	637
BstENI	CCTNNNNNAGG	1 cut(s)	184
BstF5I	GGATG	2 cut(s)	448, 917
BstKTI	GATC	5 cut(s)	283, 352, 665, 679, 757
BstMAI	GTCTC	3 cut(s)	675, 816, 884
BstMBI	GATC	5 cut(s)	280, 349, 662, 676, 754
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 385
BstNSI	RCATGY	1 cut(s)	42
BstSCI	CCNGG	1 cut(s)	366
BstSFI	CTRYAG	3 cut(s)	145, 181, 528
BstSLI	GKGCMC	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	821
BstV2I	GAAGAC	1 cut(s)	321
BsuRI	GGCC	5 cut(s)	49, 73, 496, 597, 916
BtgI	CCRYGG	1 cut(s)	637
BtsCI	GGATG	2 cut(s)	448, 917
BveI	ACCTGC	1 cut(s)	438
CciI	TCATGA	1 cut(s)	781
Cfr13I	GGNCC	4 cut(s)	48, 195, 370, 914
CseI	GACGC	1 cut(s)	851
Csp6I	GTAC	4 cut(s)	166, 190, 207, 868
CviQI	GTAC	4 cut(s)	166, 190, 207, 868
DdeI	CTNAG	5 cut(s)	156, 212, 599, 801, 838
DpnI	GATC	5 cut(s)	282, 351, 664, 678, 756
DpnII	GATC	5 cut(s)	280, 349, 662, 676, 754
DriI	GACNNNNNGTC	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	13
Eam1105I	GACNNNNNGTC	1 cut(s)	10
EarI	CTCTTC	1 cut(s)	13
Eco130I	CCWWGG	4 cut(s)	101, 161, 637, 829
Eco24I	GRGCYC	1 cut(s)	616
Eco31I	GGTCTC	1 cut(s)	884
Eco47I	GGWCC	2 cut(s)	195, 370
EcoNI	CCTNNNNNAGG	1 cut(s)	184
EcoO109I	RGGNCCY	1 cut(s)	48
EcoRI	GAATTC	1 cut(s)	478
EcoT14I	CCWWGG	4 cut(s)	101, 161, 637, 829
EcoT38I	GRGCYC	1 cut(s)	616
ErhI	CCWWGG	4 cut(s)	101, 161, 637, 829
FaqI	GGGAC	3 cut(s)	273, 433, 712
FauNDI	CATATG	2 cut(s)	739, 862
FbaI	TGATCA	1 cut(s)	676
Fnu4HI	GCNGC	1 cut(s)	835
FokI	GGATG	2 cut(s)	455, 904
FriOI	GRGCYC	1 cut(s)	616
Fsp4HI	GCNGC	1 cut(s)	835
FspBI	CTAG	4 cut(s)	102, 162, 543, 651
GluI	GCNGC	1 cut(s)	835
GsuI	CTGGAG	1 cut(s)	338
HaeIII	GGCC	5 cut(s)	49, 73, 496, 597, 916
HapII	CCGG	3 cut(s)	24, 368, 846
HgaI	GACGC	1 cut(s)	851
Hin1I	GRCGYC	1 cut(s)	843
HinfI	GANTC	4 cut(s)	5, 110, 626, 854
HpaII	CCGG	3 cut(s)	24, 368, 846
HphI	GGTGA	3 cut(s)	6, 584, 752
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	4 cut(s)	215, 393, 841, 884
Hpy188III	TCNNGA	3 cut(s)	674, 782, 815
Hpy8I	GTNNAC	1 cut(s)	209
Hpy99I	CGWCG	1 cut(s)	928
HpyAV	CCTTC	3 cut(s)	57, 180, 247
HpyCH4III	ACNGT	2 cut(s)	287, 467
HpyCH4V	TGCA	2 cut(s)	174, 379
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 385
HpyF3I	CTNAG	5 cut(s)	156, 212, 599, 801, 838
Hsp92I	GRCGYC	1 cut(s)	843
KpnI	GGTACC	1 cut(s)	871
Ksp22I	TGATCA	1 cut(s)	676
Kzo9I	GATC	5 cut(s)	280, 349, 662, 676, 754
Lsp1109I	GCAGC	1 cut(s)	821
LweI	GCATC	3 cut(s)	366, 393, 397
MaeI	CTAG	4 cut(s)	102, 162, 543, 651
MaeIII	GTNAC	2 cut(s)	12, 455
MalI	GATC	5 cut(s)	282, 351, 664, 678, 756
MboI	GATC	5 cut(s)	280, 349, 662, 676, 754
MboII	GAAGA	3 cut(s)	290, 315, 321
MfeI	CAATTG	1 cut(s)	498
MhlI	GDGCHC	3 cut(s)	101, 415, 616
MluCI	AATT	5 cut(s)	433, 478, 498, 703, 777
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	501
MnlI	CCTC	9 cut(s)	63, 101, 161, 197, 301, 486, 717, 745, 881
MseI	TTAA	3 cut(s)	35, 462, 728
MslI	CAYNNNNRTG	1 cut(s)	771
MspI	CCGG	3 cut(s)	24, 368, 846
MspR9I	CCNGG	1 cut(s)	368
MunI	CAATTG	1 cut(s)	498
Mva1269I	GAATGC	1 cut(s)	544
MwoI	GCNNNNNNNGC	2 cut(s)	105, 385
NciI	CCSGG	1 cut(s)	368
NcoI	CCATGG	1 cut(s)	637
NdeI	CATATG	2 cut(s)	739, 862
NdeII	GATC	5 cut(s)	280, 349, 662, 676, 754
NlaIV	GGNNCC	1 cut(s)	869
NmuCI	GTSAC	1 cut(s)	12
NspI	RCATGY	1 cut(s)	42
PagI	TCATGA	1 cut(s)	781
PcsI	WCGNNNNNNNCGW	1 cut(s)	323
PctI	GAATGC	1 cut(s)	544
PfeI	GAWTC	2 cut(s)	626, 854
PfoI	TCCNGGA	1 cut(s)	366
PkrI	GCNGC	1 cut(s)	836
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
PspN4I	GGNNCC	1 cut(s)	869
PspPI	GGNCC	4 cut(s)	48, 195, 370, 914
RsaI	GTAC	4 cut(s)	167, 191, 208, 869
RsaNI	GTAC	4 cut(s)	166, 190, 207, 868
RseI	CAYNNNNRTG	1 cut(s)	771
SaqAI	TTAA	3 cut(s)	35, 462, 728
SatI	GCNGC	1 cut(s)	835
Sau3AI	GATC	5 cut(s)	280, 349, 662, 676, 754
Sau96I	GGNCC	4 cut(s)	48, 195, 370, 914
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	368
SduI	GDGCHC	3 cut(s)	101, 415, 616
SfaNI	GCATC	3 cut(s)	366, 393, 397
SfcI	CTRYAG	3 cut(s)	145, 181, 528
SinI	GGWCC	2 cut(s)	195, 370
SmiMI	CAYNNNNRTG	1 cut(s)	771
SmlI	CTYRAG	5 cut(s)	43, 92, 414, 473, 815
SmoI	CTYRAG	5 cut(s)	43, 92, 414, 473, 815
Sse9I	AATT	5 cut(s)	433, 478, 498, 703, 777
SspMI	CTAG	4 cut(s)	102, 162, 543, 651
StyD4I	CCNGG	1 cut(s)	366
StyI	CCWWGG	4 cut(s)	101, 161, 637, 829
TaaI	ACNGT	2 cut(s)	287, 467
TasI	AATT	5 cut(s)	433, 478, 498, 703, 777
TfiI	GAWTC	2 cut(s)	626, 854
Tru1I	TTAA	3 cut(s)	35, 462, 728
Tru9I	TTAA	3 cut(s)	35, 462, 728
TseFI	GTSAC	1 cut(s)	12
TseI	GCWGC	1 cut(s)	834
Tsp45I	GTSAC	1 cut(s)	12
VpaK11BI	GGWCC	2 cut(s)	195, 370
XagI	CCTNNNNNAGG	1 cut(s)	184
XapI	RAATTY	2 cut(s)	478, 777
XceI	RCATGY	1 cut(s)	42
XmaJI	CCTAGG	2 cut(s)	101, 161
XspI	CTAG	4 cut(s)	102, 162, 543, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.