Rmu_sc0007014.1_g000002

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007014.1
OG0007395
Physical Location & Seq
Forward (+)
11383 .. 20852
9470 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1113 bp
atggcaacagcgttgcccatggcatcgacttccagtctcagtctcggtagacgaccacccttattgggttcatattctggaaagaggaccatgcctgcaaattatcaaggcatttgctgtctcaataattcacaactttgtacaaccacaagaggatacaaggatgacgttaatctaatcaaacggagacagatgattgccttcctttttggtttttcaagctttgtcttagactcatttcaagccgagggagctggcttgccccctgaagaaaagcctcgactatgtgatgattcttgcgaaaaacagctagaaaatgtccctatggtaactacagagtctggtttgcagtataaggacattaaagttggtcaaggccccagtccacctgtcggttttcaggtggcggcaaattatgttgccatggttccgtctggacaaatatttgacagttcattggagaagggtcaactttatatattccgtgttggctctggtcaggtgatcaaaggacttgacgaagggatcttaaccatgaaaataggagggaagcggcgactctacatcccgggatctttggcctttcccaagggtctcacttcagctccaggaaggccaagggtggctccaagtagtccagtggttttcgatgctttgcaatgtggcgtttctgttgtaattggtgaccatgacataccaccaaattctgataatgtagccgctggggcgggtttagactataaatttcaaatgggaaatgaggacactgcctatgagcagagctttaggctttgcagtgtggctttgcagtgtggcgtttttgttgtaattggtgaccatgacctaccaccaaattcttacaacgtagcctctggggcgggtttagattgtgaatttcaaatgggaaatgaggacactgcctatgatcagagctttaggctttgcaatgctttgcagtgtggcgtttttgttgtaattggtgaccatgacatgccaccaaattctgagaacgtagccgctggggcgggtttagactgtgaatttcaaatgggaaatgaggacactgcctatgagcagagctttaggctttgcaatgtagcgtttctgttgtaa

Protein Analysis

370

Amino Acids

39.7

Weight (kDa)

4.82

Isoelectric Point (pI)

47.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 129 - 217 6.9e-18 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 49
AciI CCGC 7 cut(s) 407, 553, 720, 728, 878, 1017, 1025
AclWI GGATC 2 cut(s) 533, 580
AcsI RAATTY 6 cut(s) 703, 743, 853, 893, 1000, 1040
AcuI CTGAAG 2 cut(s) 288, 585
AfaI GTAC 1 cut(s) 142
AfiI CCNNNNNNNGG 2 cut(s) 65, 392
AgsI TTSAA 5 cut(s) 219, 242, 749, 899, 1046
AhdI GACNNNNNGTC 1 cut(s) 33
AjnI CCWGG 1 cut(s) 607
AluBI AGCT 7 cut(s) 222, 254, 310, 605, 783, 933, 1080
AluI AGCT 7 cut(s) 222, 254, 310, 605, 783, 933, 1080
Alw26I GTCTC 5 cut(s) 41, 47, 125, 181, 599
AlwI GGATC 2 cut(s) 533, 580
AlwNI CAGNNNCTG 1 cut(s) 341
Ama87I CYCGRG 1 cut(s) 568
AoxI GGCC 3 cut(s) 376, 579, 614
ApoI RAATTY 6 cut(s) 703, 743, 853, 893, 1000, 1040
AspS9I GGNCC 2 cut(s) 87, 377
AsuC2I CCSGG 2 cut(s) 569, 570
AsuHPI GGTGA 4 cut(s) 514, 695, 845, 992
AvaI CYCGRG 1 cut(s) 568
AvaII GGWCC 1 cut(s) 87
BciT130I CCWGG 1 cut(s) 609
BciVI GTATCC 1 cut(s) 149
BclI TGATCA 2 cut(s) 504, 925
BcnI CCSGG 2 cut(s) 569, 570
BcoDI GTCTC 5 cut(s) 41, 47, 125, 181, 599
BfaI CTAG 1 cut(s) 311
BfmI CTRYAG 1 cut(s) 333
BfuI GTATCC 1 cut(s) 149
BglI GCCNNNNNGGC 3 cut(s) 725, 875, 1022
BisI GCNGC 4 cut(s) 408, 554, 720, 1017
BlsI GCNGC 4 cut(s) 409, 555, 721, 1018
Bme1390I CCNGG 3 cut(s) 569, 570, 609
Bme18I GGWCC 1 cut(s) 87
BmeRI GACNNNNNGTC 1 cut(s) 33
BmeT110I CYCGRG 1 cut(s) 568
BmgT120I GGNCC 2 cut(s) 87, 377
BmiI GGNNCC 3 cut(s) 379, 429, 627
BmrFI CCNGG 3 cut(s) 569, 570, 609
BmrI ACTGGG 1 cut(s) 375
BmsI GCATC 2 cut(s) 32, 640
BmuI ACTGGG 1 cut(s) 375
BpmI CTGGAG 1 cut(s) 591
BpuMI CCSGG 2 cut(s) 569, 570
BsaI GGTCTC 1 cut(s) 599
BsaJI CCNNGG 6 cut(s) 18, 246, 423, 568, 588, 617
BsaXI ACNNNNNCTCC 2 cut(s) 589, 619
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 392
Bse1I ACTGG 3 cut(s) 33, 381, 638
Bse3DI GCAATG 3 cut(s) 665, 952, 1099
BseBI CCWGG 1 cut(s) 609
BseDI CCNNGG 6 cut(s) 18, 246, 423, 568, 588, 617
BseGI GGATG 2 cut(s) 169, 564
BseLI CCNNNNNNNGG 2 cut(s) 65, 392
BseMI GCAATG 3 cut(s) 665, 952, 1099
BseMII CTCAG 2 cut(s) 52, 996
BseNI ACTGG 3 cut(s) 33, 381, 638
BseYI CCCAGC 2 cut(s) 722, 1019
BshFI GGCC 3 cut(s) 378, 581, 616
BsiHKCI CYCGRG 1 cut(s) 568
BsiSI CCGG 1 cut(s) 569
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 2 cut(s) 65, 392
BsmAI GTCTC 5 cut(s) 41, 47, 125, 181, 599
BsmFI GGGAC 1 cut(s) 305
BsnI GGCC 3 cut(s) 378, 581, 616
Bso31I GGTCTC 1 cut(s) 599
BsoBI CYCGRG 1 cut(s) 568
Bsp1407I TGTACA 1 cut(s) 140
Bsp143I GATC 4 cut(s) 504, 525, 572, 925
Bsp19I CCATGG 2 cut(s) 18, 423
BspACI CCGC 7 cut(s) 407, 553, 720, 728, 878, 1017, 1025
BspANI GGCC 3 cut(s) 378, 581, 616
BspCNI CTCAG 2 cut(s) 51, 997
BspLI GGNNCC 3 cut(s) 379, 429, 627
BspPI GGATC 2 cut(s) 533, 580
BspTNI GGTCTC 1 cut(s) 599
BsrDI GCAATG 3 cut(s) 665, 952, 1099
BsrGI TGTACA 1 cut(s) 140
BsrI ACTGG 3 cut(s) 33, 381, 638
BssECI CCNNGG 6 cut(s) 18, 246, 423, 568, 588, 617
BssMI GATC 4 cut(s) 504, 525, 572, 925
BssT1I CCWWGG 4 cut(s) 18, 423, 588, 617
Bst2UI CCWGG 1 cut(s) 609
Bst4CI ACNGT 2 cut(s) 452, 1037
BstAUI TGTACA 1 cut(s) 140
BstC8I GCNNGC 3 cut(s) 96, 256, 260
BstDEI CTNAG 3 cut(s) 38, 229, 1005
BstDSI CCRYGG 2 cut(s) 18, 423
BstEII GGTNACC 3 cut(s) 683, 833, 980
BstF5I GGATG 2 cut(s) 169, 564
BstKTI GATC 4 cut(s) 507, 528, 575, 928
BstMAI GTCTC 5 cut(s) 41, 47, 125, 181, 599
BstMBI GATC 4 cut(s) 504, 525, 572, 925
BstMWI GCNNNNNNNGC 4 cut(s) 251, 725, 875, 1022
BstNI CCWGG 1 cut(s) 609
BstNSI RCATGY 1 cut(s) 994
BstPI GGTNACC 3 cut(s) 683, 833, 980
BstSCI CCNGG 3 cut(s) 567, 568, 607
BstSFI CTRYAG 1 cut(s) 333
BstX2I RGATCY 2 cut(s) 525, 572
BstYI RGATCY 2 cut(s) 525, 572
BsuI GTATCC 1 cut(s) 149
BsuRI GGCC 3 cut(s) 378, 581, 616
BtgI CCRYGG 2 cut(s) 18, 423
BtsCI GGATG 2 cut(s) 169, 564
BtsI GCAGTG 6 cut(s) 765, 802, 815, 915, 962, 1062
BtsIMutI CAGTG 7 cut(s) 645, 765, 802, 815, 915, 962, 1062
Cac8I GCNNGC 3 cut(s) 96, 256, 260
CaiI CAGNNNCTG 1 cut(s) 341
Cfr13I GGNCC 2 cut(s) 87, 377
Cfr9I CCCGGG 1 cut(s) 568
Csp6I GTAC 1 cut(s) 141
CspCI CAANNNNNGTGG 2 cut(s) 45, 80
CviAII CATG 8 cut(s) 19, 91, 424, 535, 689, 839, 986, 991
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 3 cut(s) 38, 229, 1005
DpnI GATC 4 cut(s) 506, 527, 574, 927
DpnII GATC 4 cut(s) 504, 525, 572, 925
DriI GACNNNNNGTC 1 cut(s) 33
Eam1105I GACNNNNNGTC 1 cut(s) 33
Eco130I CCWWGG 4 cut(s) 18, 423, 588, 617
Eco31I GGTCTC 1 cut(s) 599
Eco47I GGWCC 1 cut(s) 87
Eco57I CTGAAG 2 cut(s) 288, 585
Eco88I CYCGRG 1 cut(s) 568
Eco91I GGTNACC 3 cut(s) 683, 833, 980
EcoO109I RGGNCCY 1 cut(s) 377
EcoO65I GGTNACC 3 cut(s) 683, 833, 980
EcoRII CCWGG 1 cut(s) 607
EcoT14I CCWWGG 4 cut(s) 18, 423, 588, 617
ErhI CCWWGG 4 cut(s) 18, 423, 588, 617
FaeI CATG 8 cut(s) 22, 94, 427, 538, 692, 842, 989, 994
FaqI GGGAC 1 cut(s) 305
FatI CATG 8 cut(s) 18, 90, 423, 534, 688, 838, 985, 990
FauI CCCGC 3 cut(s) 721, 871, 1018
FbaI TGATCA 2 cut(s) 504, 925
FblI GTMKAC 1 cut(s) 49
Fnu4HI GCNGC 4 cut(s) 408, 554, 720, 1017
FokI GGATG 2 cut(s) 176, 551
Fsp4HI GCNGC 4 cut(s) 408, 554, 720, 1017
FspBI CTAG 1 cut(s) 311
GluI GCNGC 4 cut(s) 408, 554, 720, 1017
GsaI CCCAGC 2 cut(s) 726, 1023
GsuI CTGGAG 1 cut(s) 591
HaeIII GGCC 3 cut(s) 378, 581, 616
HapII CCGG 1 cut(s) 569
Hin1II CATG 8 cut(s) 22, 94, 427, 538, 692, 842, 989, 994
HincII GTYRAC 1 cut(s) 470
HindII GTYRAC 1 cut(s) 470
HindIII AAGCTT 1 cut(s) 220
HinfI GANTC 4 cut(s) 233, 293, 338, 558
HpaII CCGG 1 cut(s) 569
HphI GGTGA 4 cut(s) 514, 695, 845, 992
Hpy166II GTNNAC 3 cut(s) 50, 386, 470
Hpy188I TCNGA 3 cut(s) 709, 930, 1006
Hpy188III TCNNGA 2 cut(s) 78, 435
Hpy8I GTNNAC 3 cut(s) 50, 386, 470
HpyAV CCTTC 4 cut(s) 211, 457, 515, 606
HpyCH4III ACNGT 2 cut(s) 452, 1037
HpyCH4IV ACGT 3 cut(s) 168, 864, 1011
HpyCH4V TGCA 8 cut(s) 98, 349, 658, 795, 808, 945, 955, 1092
HpyF10VI GCNNNNNNNGC 4 cut(s) 251, 725, 875, 1022
HpyF3I CTNAG 3 cut(s) 38, 229, 1005
HpySE526I ACGT 3 cut(s) 168, 864, 1011
Hsp92II CATG 8 cut(s) 22, 94, 427, 538, 692, 842, 989, 994
Ksp22I TGATCA 2 cut(s) 504, 925
Kzo9I GATC 4 cut(s) 504, 525, 572, 925
LmnI GCTCC 3 cut(s) 251, 610, 631
LweI GCATC 2 cut(s) 32, 640
MaeI CTAG 1 cut(s) 311
MaeII ACGT 3 cut(s) 168, 864, 1011
MaeIII GTNAC 4 cut(s) 328, 683, 833, 980
MalI GATC 4 cut(s) 506, 527, 574, 927
MboI GATC 4 cut(s) 504, 525, 572, 925
MboII GAAGA 1 cut(s) 281
MflI RGATCY 2 cut(s) 525, 572
MlyI GAGTC 3 cut(s) 227, 347, 552
MnlI CCTC 9 cut(s) 78, 146, 241, 288, 539, 754, 880, 904, 1051
MseI TTAA 3 cut(s) 171, 363, 530
MspA1I CMGCKG 2 cut(s) 722, 1019
MspI CCGG 1 cut(s) 569
MspR9I CCNGG 3 cut(s) 569, 570, 609
MvaI CCWGG 1 cut(s) 609
MwoI GCNNNNNNNGC 4 cut(s) 251, 725, 875, 1022
NciI CCSGG 2 cut(s) 569, 570
NcoI CCATGG 2 cut(s) 18, 423
NdeII GATC 4 cut(s) 504, 525, 572, 925
NlaIII CATG 8 cut(s) 22, 94, 427, 538, 692, 842, 989, 994
NlaIV GGNNCC 3 cut(s) 379, 429, 627
NmeAIII GCCGAG 1 cut(s) 271
NmuCI GTSAC 3 cut(s) 683, 833, 980
NspI RCATGY 1 cut(s) 994
PfeI GAWTC 1 cut(s) 293
PfoI TCCNGGA 1 cut(s) 607
PkrI GCNGC 4 cut(s) 409, 555, 721, 1018
PleI GAGTC 3 cut(s) 227, 346, 552
PpsI GAGTC 3 cut(s) 227, 346, 552
Psp6I CCWGG 1 cut(s) 607
PspEI GGTNACC 3 cut(s) 683, 833, 980
PspFI CCCAGC 2 cut(s) 722, 1019
PspGI CCWGG 1 cut(s) 607
PspN4I GGNNCC 3 cut(s) 379, 429, 627
PspPI GGNCC 2 cut(s) 87, 377
PstNI CAGNNNCTG 1 cut(s) 341
PsuI RGATCY 2 cut(s) 525, 572
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
SaqAI TTAA 3 cut(s) 171, 363, 530
SatI GCNGC 4 cut(s) 408, 554, 720, 1017
Sau3AI GATC 4 cut(s) 504, 525, 572, 925
Sau96I GGNCC 2 cut(s) 87, 377
SchI GAGTC 3 cut(s) 227, 347, 552
ScrFI CCNGG 3 cut(s) 569, 570, 609
SfaNI GCATC 2 cut(s) 32, 640
SfcI CTRYAG 1 cut(s) 333
SinI GGWCC 1 cut(s) 87
SmaI CCCGGG 1 cut(s) 570
SsiI CCGC 7 cut(s) 407, 553, 720, 728, 878, 1017, 1025
SspI AATATT 1 cut(s) 444
SspMI CTAG 1 cut(s) 311
StyD4I CCNGG 3 cut(s) 567, 568, 607
StyI CCWWGG 4 cut(s) 18, 423, 588, 617
TaaI ACNGT 2 cut(s) 452, 1037
TaiI ACGT 3 cut(s) 171, 867, 1014
TaqI TCGA 3 cut(s) 26, 280, 648
TatI WGTACW 1 cut(s) 140
TauI GCSGC 4 cut(s) 410, 556, 722, 1019
TfiI GAWTC 1 cut(s) 293
Tru1I TTAA 3 cut(s) 171, 363, 530
Tru9I TTAA 3 cut(s) 171, 363, 530
TscAI CASTG 7 cut(s) 645, 772, 802, 815, 922, 962, 1069
TseFI GTSAC 3 cut(s) 683, 833, 980
Tsp45I GTSAC 3 cut(s) 683, 833, 980
TspDTI ATGAA 3 cut(s) 60, 444, 551
TspGWI ACGGA 3 cut(s) 199, 420, 473
TspMI CCCGGG 1 cut(s) 568
TspRI CASTG 7 cut(s) 645, 772, 802, 815, 922, 962, 1069
VpaK11BI GGWCC 1 cut(s) 87
XapI RAATTY 6 cut(s) 703, 743, 853, 893, 1000, 1040
XceI RCATGY 1 cut(s) 994
XmaI CCCGGG 1 cut(s) 568
XmiI GTMKAC 1 cut(s) 49
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.