Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007035.1

Orthogroup ID

OG0009624

Physical Location & Seq

Genomic Coordinates Forward (+)

34852 .. 36893

Gene Structure 2042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1593 bp

atgaggaggttccgaaaaccaaagctgatacctttactggagcaaaagcctccaacactcccacagctctctccgatcccaaacccatctctcccaaaacccccacaacacccatcaccaccaccttccccaatcctcactctctcccacacctcaaaccacacccacctcctcaccttcatcaaaacccacatcaaaaacccacctctctcccccaaaacccttctccatttcctcaaatccaagctccaccaccaccccaccttcacccatttcgacttccacgtcttcaactgggcctcctccattgactcctaccgccatgaccacacaaccttcgaatggatggtctgcactctcgcaaccaccgaccgcttcgccgagctgggccatctcatcggtttcatggtttcgaacccatgcccttgttccgatggtattttctcttgccccagaacagaacccattttcaaatttgcgattagtgcttattgtagagtagggagattgggtgatgctgttagtgcttttgattccatgaggaaattgattgatgggaagcctagtgttgtggtttataacattgtgattaatgggtttgtgaaatgtggggcacatggtaaggctttggggttttatgagaagatggtgagggatagagtaaggggtgatgtgtttactttcaatattttgattagtagttattgtcgaaattcgcaattcgggttggctttggagttgtttaaggagatgagggagaaggggtgtagtcccaatgtggttagtttcaatactttgattaaggggttctttagggagaggaagtttgaggatgggattgagatggcttatgagatgattgagtttgggtgcaagttttcgagtgtgacttgtgagattttggttgatggactttgtagagaaggtcgggttgaggaggcgtgtgagctgttgattgatttttcaaggaaaggagtgctgcctagattgtatgattactatggtcttgttgaagtgctttgtgggaaaagaaattcggggagagcgttggaggttgtggatgagctgtggaggacgggaaatgttccgagcttgattgcttgtacgactttggttgagggtttgaggaggtcggcgaggattgatgaagctttagaagtgattgaaaggatgcttgaagagggtatggttccagatattgtgacttttaattgcctccttcaagatctttgcaatttggggagaactgaggaagctgataaccttaggttgttgtcttctagtaaaggcttggagctagacggcatggcctataccattttggtgtctgggtattcaagagaagggaaaaagaaggaggtgaaagtggtggtggatgagatgctggatatgggatttatacctgatcttgctacatataatagcccttttcccggcctttgcctcaaaggttcaagtcttcaacacaccaccaccacttataggcctggtggtgctgtcgagaacgataagatcccttctcatgtgagaaagcaagcaatggaagctctagacacttgtggaagaagagctattggtgacatggccgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

530

Amino Acids

59.53

Weight (kDa)

8.04

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	188 - 237	4.8e-14	PPR repeat family
PPR_3	PF13812	214 - 268	8.5e-13	Pentatricopeptide repeat domain
PPR_2	PF13041	224 - 269	5.9e-17	PPR repeat family
PPR_1	PF12854	224 - 252	1.5e-08	PPR repeat
PPR	PF01535	226 - 256	1.1e-09	PPR repeat
PPR_1	PF12854	254 - 286	2.9e-07	PPR repeat
PPR_2	PF13041	258 - 307	7.6e-12	PPR repeat family
PPR_1	PF12854	290 - 318	4.7e-07	PPR repeat
PPR_3	PF13812	352 - 408	1.9e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	363 - 412	4.4e-09	PPR repeat family
PPR_2	PF13041	437 - 481	6.4e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36240
fragaria_vesca	FvH4_6g18780
prunus_persica	Prupe.7G109800_v2.0.a1
pyrus_communis	pycom04g01140 pycom15g30020
rosa_chinensis	RchiOBHm_Chr3g0473791
rosa_laevigata	RLG00000015254 RLG00000023984
rosa_multiflora	Rmu_co8122080.1_g000001 Rmu_sc0001293.1_g000012 Rmu_sc0007035.1_g000006 Rmu_sc0007035.1_g000008
rosa_roxburghii	Rroxscaffold_1G00029320 Rroxscaffold_6G00407800
rosa_rugosa	Rorug03G0135500
rosa_samantha	Rh3BG214200 Rh3BG214500 Rh3CG210900 Rh3CG211100 Rh3DG210100 Rh3DG210300
rosa_wichuraiana	Rw3G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	579
AasI	GACNNNNNNGTC	1 cut(s)	284
AciI	CCGC	2 cut(s)	319, 373
AclWI	GGATC	2 cut(s)	70, 1507
AcoI	YGGCCR	1 cut(s)	1584
AcsI	RAATTY	3 cut(s)	473, 712, 1033
AfaI	GTAC	1 cut(s)	1105
AfiI	CCNNNNNNNGG	3 cut(s)	342, 1433, 1482
AjiI	CACGTC	1 cut(s)	286
AjnI	CCWGG	1 cut(s)	1486
AlwI	GGATC	2 cut(s)	70, 1507
AoxI	GGCC	6 cut(s)	297, 388, 1308, 1435, 1484, 1584
ApeKI	GCWGC	1 cut(s)	979
ApoI	RAATTY	3 cut(s)	473, 712, 1033
ArsI	GACNNNNNNTTYG	2 cut(s)	333, 365
AseI	ATTAAT	1 cut(s)	591
AspS9I	GGNCC	2 cut(s)	297, 388
AsuC2I	CCSGG	1 cut(s)	1434
AsuHPI	GGTGA	8 cut(s)	108, 166, 259, 524, 661, 680, 1372, 1589
AsuII	TTCGAA	2 cut(s)	339, 413
AxyI	CCTNAGG	1 cut(s)	1265
BaeGI	GKGCMC	1 cut(s)	616
BbsI	GAAGAC	3 cut(s)	280, 1269, 1451
BbvI	GCAGC	1 cut(s)	966
BceAI	ACGGC	2 cut(s)	1318, 1571
BciT130I	CCWGG	1 cut(s)	1488
BcnI	CCSGG	1 cut(s)	1434
BfaI	CTAG	5 cut(s)	564, 984, 1281, 1298, 1550
BglII	AGATCT	1 cut(s)	1225
BisI	GCNGC	1 cut(s)	980
BlsI	GCNGC	1 cut(s)	981
Bme1390I	CCNGG	2 cut(s)	1434, 1488
BmgBI	CACGTC	1 cut(s)	286
BmgT120I	GGNCC	2 cut(s)	297, 388
BmiI	GGNNCC	2 cut(s)	11, 1191
BmrFI	CCNGG	2 cut(s)	1434, 1488
BmrI	ACTGGG	1 cut(s)	304
BmsI	GCATC	3 cut(s)	505, 1161, 1371
BmuI	ACTGGG	1 cut(s)	304
BpiI	GAAGAC	3 cut(s)	280, 1269, 1451
BpmI	CTGGAG	1 cut(s)	59
Bpu14I	TTCGAA	2 cut(s)	339, 413
BpuMI	CCSGG	1 cut(s)	1434
BsaXI	ACNNNNNCTCC	8 cut(s)	284, 314, 496, 526, 749, 779, 809, 839
Bsc4I	CCNNNNNNNGG	3 cut(s)	342, 1433, 1482
Bse1I	ACTGG	2 cut(s)	42, 299
Bse21I	CCTNAGG	1 cut(s)	1265
Bse3DI	GCAATG	1 cut(s)	1545
BseBI	CCWGG	1 cut(s)	1488
BseGI	GGATG	5 cut(s)	351, 838, 1066, 1176, 1381
BseLI	CCNNNNNNNGG	3 cut(s)	342, 1433, 1482
BseMI	GCAATG	1 cut(s)	1545
BseMII	CTCAG	1 cut(s)	1239
BseNI	ACTGG	2 cut(s)	42, 299
BseRI	GAGGAG	5 cut(s)	19, 161, 292, 950, 1141
BseSI	GKGCMC	1 cut(s)	616
BseXI	GCAGC	1 cut(s)	966
BseYI	CCCAGC	1 cut(s)	385
BsgI	GTGCAG	1 cut(s)	337
Bsh1285I	CGRYCG	1 cut(s)	373
BshFI	GGCC	6 cut(s)	299, 390, 1310, 1437, 1486, 1586
BsiEI	CGRYCG	1 cut(s)	373
BsiSI	CCGG	1 cut(s)	1434
BslFI	GGGAC	1 cut(s)	756
BslI	CCNNNNNNNGG	3 cut(s)	342, 1433, 1482
BsmFI	GGGAC	1 cut(s)	756
BsnI	GGCC	6 cut(s)	299, 390, 1310, 1437, 1486, 1586
Bsp119I	TTCGAA	2 cut(s)	339, 413
Bsp1286I	GDGCHC	1 cut(s)	616
Bsp143I	GATC	4 cut(s)	75, 1225, 1405, 1512
BspACI	CCGC	2 cut(s)	319, 373
BspANI	GGCC	6 cut(s)	299, 390, 1310, 1437, 1486, 1586
BspCNI	CTCAG	1 cut(s)	1240
BspLI	GGNNCC	2 cut(s)	11, 1191
BspPI	GGATC	2 cut(s)	70, 1507
BspQI	GCTCTTC	1 cut(s)	1561
BspT104I	TTCGAA	2 cut(s)	339, 413
BsrDI	GCAATG	1 cut(s)	1545
BsrI	ACTGG	2 cut(s)	42, 299
BssMI	GATC	4 cut(s)	75, 1225, 1405, 1512
Bst2UI	CCWGG	1 cut(s)	1488
Bst6I	CTCTTC	2 cut(s)	1173, 1561
BstBI	TTCGAA	2 cut(s)	339, 413
BstC8I	GCNNGC	1 cut(s)	1536
BstDEI	CTNAG	2 cut(s)	1248, 1265
BstF5I	GGATG	5 cut(s)	351, 838, 1066, 1176, 1381
BstKTI	GATC	4 cut(s)	78, 1228, 1408, 1515
BstMBI	GATC	4 cut(s)	75, 1225, 1405, 1512
BstMCI	CGRYCG	1 cut(s)	373
BstMWI	GCNNNNNNNGC	3 cut(s)	485, 524, 1544
BstNI	CCWGG	1 cut(s)	1488
BstSCI	CCNGG	2 cut(s)	1432, 1486
BstSLI	GKGCMC	1 cut(s)	616
BstV1I	GCAGC	1 cut(s)	966
BstV2I	GAAGAC	3 cut(s)	280, 1269, 1451
BstX2I	RGATCY	2 cut(s)	1225, 1512
BstYI	RGATCY	2 cut(s)	1225, 1512
Bsu36I	CCTNAGG	1 cut(s)	1265
BsuRI	GGCC	6 cut(s)	299, 390, 1310, 1437, 1486, 1586
BtrI	CACGTC	1 cut(s)	286
BtsCI	GGATG	5 cut(s)	351, 838, 1066, 1176, 1381
Cac8I	GCNNGC	1 cut(s)	1536
Cfr13I	GGNCC	2 cut(s)	297, 388
Csp6I	GTAC	1 cut(s)	1104
CviAII	CATG	8 cut(s)	323, 406, 420, 538, 617, 1306, 1523, 1582
CviQI	GTAC	1 cut(s)	1104
DdeI	CTNAG	2 cut(s)	1248, 1265
DpnI	GATC	4 cut(s)	77, 1227, 1407, 1514
DpnII	GATC	4 cut(s)	75, 1225, 1405, 1512
DrdI	GACNNNNNNGTC	1 cut(s)	284
DseDI	GACNNNNNNGTC	1 cut(s)	284
EaeI	YGGCCR	1 cut(s)	1584
Eam1104I	CTCTTC	2 cut(s)	1173, 1561
EarI	CTCTTC	2 cut(s)	1173, 1561
Eco147I	AGGCCT	1 cut(s)	1486
Eco81I	CCTNAGG	1 cut(s)	1265
EcoRII	CCWGG	1 cut(s)	1486
FaeI	CATG	8 cut(s)	326, 409, 423, 541, 620, 1309, 1526, 1585
FalI	AAGNNNNNCTT	2 cut(s)	794, 826
FaqI	GGGAC	1 cut(s)	756
FatI	CATG	8 cut(s)	322, 405, 419, 537, 616, 1305, 1522, 1581
Fnu4HI	GCNGC	1 cut(s)	980
FokI	GGATG	5 cut(s)	358, 845, 1073, 1183, 1388
Fsp4HI	GCNGC	1 cut(s)	980
FspBI	CTAG	5 cut(s)	564, 984, 1281, 1298, 1550
GluI	GCNGC	1 cut(s)	980
GsaI	CCCAGC	1 cut(s)	389
GsuI	CTGGAG	1 cut(s)	59
HaeIII	GGCC	6 cut(s)	299, 390, 1310, 1437, 1486, 1586
HapII	CCGG	1 cut(s)	1434
Hin1II	CATG	8 cut(s)	326, 409, 423, 541, 620, 1309, 1526, 1585
HindIII	AAGCTT	1 cut(s)	1149
HinfI	GANTC	2 cut(s)	311, 533
HpaII	CCGG	1 cut(s)	1434
HphI	GGTGA	8 cut(s)	108, 166, 259, 524, 661, 680, 1372, 1589
Hpy166II	GTNNAC	1 cut(s)	678
Hpy188I	TCNGA	4 cut(s)	14, 75, 433, 1089
Hpy188III	TCNNGA	5 cut(s)	1193, 1223, 1338, 1501, 1550
Hpy8I	GTNNAC	1 cut(s)	678
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	3 cut(s)	354, 873, 1233
HpyF10VI	GCNNNNNNNGC	3 cut(s)	485, 524, 1544
HpyF3I	CTNAG	2 cut(s)	1248, 1265
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	8 cut(s)	326, 409, 423, 541, 620, 1309, 1526, 1585
Kzo9I	GATC	4 cut(s)	75, 1225, 1405, 1512
LguI	GCTCTTC	1 cut(s)	1561
LmnI	GCTCC	3 cut(s)	40, 252, 1294
Lsp1109I	GCAGC	1 cut(s)	966
LweI	GCATC	3 cut(s)	505, 1161, 1371
MaeI	CTAG	5 cut(s)	564, 984, 1281, 1298, 1550
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	3 cut(s)	886, 1201, 1577
MalI	GATC	4 cut(s)	77, 1227, 1407, 1514
MboI	GATC	4 cut(s)	75, 1225, 1405, 1512
MboII	GAAGA	7 cut(s)	280, 655, 1190, 1269, 1451, 1575, 1578
MflI	RGATCY	2 cut(s)	1225, 1512
MhlI	GDGCHC	1 cut(s)	616
MluCI	AATT	7 cut(s)	473, 545, 712, 719, 1033, 1210, 1234
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	2 cut(s)	77, 1029
MseI	TTAA	4 cut(s)	591, 744, 801, 1209
MslI	CAYNNNNRTG	1 cut(s)	1322
MspI	CCGG	1 cut(s)	1434
MspR9I	CCNGG	2 cut(s)	1434, 1488
MvaI	CCWGG	1 cut(s)	1488
MwoI	GCNNNNNNNGC	3 cut(s)	485, 524, 1544
NciI	CCSGG	1 cut(s)	1434
NdeII	GATC	4 cut(s)	75, 1225, 1405, 1512
NlaIII	CATG	8 cut(s)	326, 409, 423, 541, 620, 1309, 1526, 1585
NlaIV	GGNNCC	2 cut(s)	11, 1191
NmeAIII	GCCGAG	1 cut(s)	406
NmuCI	GTSAC	3 cut(s)	886, 1201, 1577
NspV	TTCGAA	2 cut(s)	339, 413
PceI	AGGCCT	1 cut(s)	1486
PciSI	GCTCTTC	1 cut(s)	1561
PcsI	WCGNNNNNNNCGW	3 cut(s)	282, 366, 1043
PfeI	GAWTC	1 cut(s)	533
PkrI	GCNGC	1 cut(s)	981
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
PshBI	ATTAAT	1 cut(s)	591
PsiI	TTATAA	1 cut(s)	579
Psp6I	CCWGG	1 cut(s)	1486
PspFI	CCCAGC	1 cut(s)	385
PspGI	CCWGG	1 cut(s)	1486
PspN4I	GGNNCC	2 cut(s)	11, 1191
PspPI	GGNCC	2 cut(s)	297, 388
PsuI	RGATCY	2 cut(s)	1225, 1512
RsaI	GTAC	1 cut(s)	1105
RsaNI	GTAC	1 cut(s)	1104
RseI	CAYNNNNRTG	1 cut(s)	1322
SapI	GCTCTTC	1 cut(s)	1561
SaqAI	TTAA	4 cut(s)	591, 744, 801, 1209
SatI	GCNGC	1 cut(s)	980
Sau3AI	GATC	4 cut(s)	75, 1225, 1405, 1512
Sau96I	GGNCC	2 cut(s)	297, 388
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	2 cut(s)	1434, 1488
SduI	GDGCHC	1 cut(s)	616
SfaNI	GCATC	3 cut(s)	505, 1161, 1371
SfuI	TTCGAA	2 cut(s)	339, 413
SmiMI	CAYNNNNRTG	1 cut(s)	1322
Sse9I	AATT	7 cut(s)	473, 545, 712, 719, 1033, 1210, 1234
SseBI	AGGCCT	1 cut(s)	1486
SsiI	CCGC	2 cut(s)	319, 373
SspI	AATATT	1 cut(s)	688
SspMI	CTAG	5 cut(s)	564, 984, 1281, 1298, 1550
StuI	AGGCCT	1 cut(s)	1486
StyD4I	CCNGG	2 cut(s)	1432, 1486
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	6 cut(s)	276, 339, 413, 709, 881, 1500
TasI	AATT	7 cut(s)	473, 545, 712, 719, 1033, 1210, 1234
TfiI	GAWTC	1 cut(s)	533
Tru1I	TTAA	4 cut(s)	591, 744, 801, 1209
Tru9I	TTAA	4 cut(s)	591, 744, 801, 1209
TseFI	GTSAC	3 cut(s)	886, 1201, 1577
TseI	GCWGC	1 cut(s)	979
Tsp45I	GTSAC	3 cut(s)	886, 1201, 1577
TspDTI	ATGAA	3 cut(s)	169, 394, 1161
VspI	ATTAAT	1 cut(s)	591
XapI	RAATTY	3 cut(s)	473, 712, 1033
XbaI	TCTAGA	1 cut(s)	1549
XspI	CTAG	5 cut(s)	564, 984, 1281, 1298, 1550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.