Rmu_sc0007172.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007172.1
OG0013150
Physical Location & Seq
Reverse (-)
3733 .. 5091
1359 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1074 bp
atgtactatgcaaagccttcatgcctattgcaagccacagaagtgaatgtctgcacagatacgtcagtggaaaaaagcttcttgtcattaagggattatgaatgtcaggctttatataaggtcaagctaggtactagtaatgcttatggttcaagtctctccgaccttactgctggaatcctcctgtgcgtgatagacgaaaatggtaactccatactacagaggataccctcgaatttgagaccggatgaatctaaagaagtagaggatgagataattcagtttcaaagaggttctgttgatgagttcacctttaagggacctaaacttggaaaagttgaagctctttggatcagtcttgaatcaggccaatggaggttaggaagtgtgaacttgactgttatatatgggaatcatatttctttggaggaaacagatggagaggaacctcagtatattggtttcgattacaacttccaagctgaggacatcttgctcggagagggaagtgacagctccatggtggaacttagaccttgccttgtcaccaagctatctggggttgaccccttcaccatgttgactaaaagcctccctgaatcaactctatccgagagccgtgggatatcaaatgaggaaaccatgagagaatacgcggatttgaagttctctttgctactttacgatgccatactggtcttggttggtacatcagttgcatccttttcagttggggaaaatgccggttctgcatttttaacaggtgggattggtggcttcttgtatcttcttctactgcagaggtcagttgatggattacctattccagaatcaatttccgtggacagcaaaagcaccaatcaaatgtttggaggaatgaagaggccaatctttggccttgcattggctcttggttttgctttatttacagtgaagtatagctctggggatgtcccaatggttttcacagcaaaagaagtcttggctgggatggtgggatttcttgcatgtaaagttgctgtggttttggcagcaattaagcccatgacaatagacctaaagataaaagactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

357

Amino Acids

38.79

Weight (kDa)

4.62

Isoelectric Point (pI)

34.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7755 PF24938 37 - 183 2.4e-63 Domain of unknown function (DUF7755)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013150)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55280 AT1G55280
fragaria_vesca FvH4_3g45230
malus_domestica MD03G1007100.v1.1
prunus_persica Prupe.6G006700_v2.0.a1
pyrus_communis pycom03g00720
rosa_chinensis RchiOBHm_Chr5g0082841
rosa_laevigata RLG00000036994
rosa_multiflora Rmu_sc0001381.1_g000013 Rmu_sc0007172.1_g000002
rosa_roxburghii Rroxscaffold_1G00001590
rosa_rugosa Rorug05G0480300
rosa_samantha Rh5AG530600 Rh5AG530700 Rh5BG557600 Rh5CG580600 Rh5DG565900
rosa_wichuraiana Rw5G049800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 893
AccII CGCG 1 cut(s) 656
AciI CCGC 1 cut(s) 656
AclWI GGATC 1 cut(s) 359
AcsI RAATTY 1 cut(s) 235
AfaI GTAC 3 cut(s) 5, 133, 709
AfiI CCNNNNNNNGG 4 cut(s) 329, 484, 893, 904
AgsI TTSAA 5 cut(s) 153, 287, 341, 362, 664
AhlI ACTAGT 1 cut(s) 134
AleI CACNNNNGTG 1 cut(s) 41
AloI GAACNNNNNNTCC 2 cut(s) 650, 682
AluBI AGCT 7 cut(s) 78, 127, 344, 482, 516, 553, 942
AluI AGCT 7 cut(s) 78, 127, 344, 482, 516, 553, 942
Alw26I GTCTC 2 cut(s) 161, 235
AlwI GGATC 1 cut(s) 359
AoxI GGCC 3 cut(s) 367, 884, 895
ApeKI GCWGC 1 cut(s) 1031
ApoI RAATTY 1 cut(s) 235
AspS9I GGNCC 1 cut(s) 320
AsuHPI GGTGA 3 cut(s) 301, 538, 565
AvaII GGWCC 1 cut(s) 320
BaeI ACNNNNGTAYC 4 cut(s) 51, 84, 699, 732
BbvCI CCTCAGC 1 cut(s) 483
BbvI GCAGC 1 cut(s) 1043
BccI CCATC 3 cut(s) 431, 806, 985
BceAI ACGGC 1 cut(s) 603
BcgI CGANNNNNNTGC 2 cut(s) 152, 186
BciVI GTATCC 1 cut(s) 219
BcoDI GTCTC 2 cut(s) 161, 235
BcuI ACTAGT 1 cut(s) 134
BfaI CTAG 2 cut(s) 128, 135
BfmI CTRYAG 2 cut(s) 218, 797
BfuI GTATCC 1 cut(s) 219
BisI GCNGC 1 cut(s) 1032
BlsI GCNGC 1 cut(s) 1033
Bme18I GGWCC 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 320
BmiI GGNNCC 2 cut(s) 321, 447
BmsI GCATC 2 cut(s) 676, 728
Bpu10I CCTNAGC 1 cut(s) 483
BsaI GGTCTC 1 cut(s) 235
BsaJI CCNNGG 3 cut(s) 519, 619, 840
BsaWI WCCGGW 1 cut(s) 244
Bsc4I CCNNNNNNNGG 4 cut(s) 329, 484, 893, 904
Bse118I RCCGGY 1 cut(s) 743
Bse1I ACTGG 1 cut(s) 699
BseDI CCNNGG 3 cut(s) 519, 619, 840
BseGI GGATG 5 cut(s) 253, 274, 719, 955, 996
BseLI CCNNNNNNNGG 4 cut(s) 329, 484, 893, 904
BseMII CTCAG 2 cut(s) 464, 474
BseNI ACTGG 1 cut(s) 699
BseXI GCAGC 1 cut(s) 1043
BseYI CCCAGC 1 cut(s) 986
BsgI GTGCAG 1 cut(s) 37
Bsh1236I CGCG 1 cut(s) 656
BshFI GGCC 3 cut(s) 369, 886, 897
BsiSI CCGG 2 cut(s) 245, 744
BslFI GGGAC 2 cut(s) 333, 938
BslI CCNNNNNNNGG 4 cut(s) 329, 484, 893, 904
BsmAI GTCTC 2 cut(s) 161, 235
BsmFI GGGAC 2 cut(s) 333, 938
BsnI GGCC 3 cut(s) 369, 886, 897
Bso31I GGTCTC 1 cut(s) 235
Bsp143I GATC 1 cut(s) 351
Bsp19I CCATGG 1 cut(s) 519
BspACI CCGC 1 cut(s) 656
BspANI GGCC 3 cut(s) 369, 886, 897
BspCNI CTCAG 2 cut(s) 463, 475
BspFNI CGCG 1 cut(s) 656
BspLI GGNNCC 2 cut(s) 321, 447
BspMAI CTGCAG 1 cut(s) 801
BspPI GGATC 1 cut(s) 359
BspTNI GGTCTC 1 cut(s) 235
BsrFI RCCGGY 1 cut(s) 743
BsrI ACTGG 1 cut(s) 699
BssAI RCCGGY 1 cut(s) 743
BssECI CCNNGG 3 cut(s) 519, 619, 840
BssMI GATC 1 cut(s) 351
BssT1I CCWWGG 1 cut(s) 519
Bst4CI ACNGT 2 cut(s) 400, 931
Bst6I CTCTTC 1 cut(s) 875
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 3 cut(s) 450, 483, 530
BstDSI CCRYGG 3 cut(s) 519, 619, 840
BstF5I GGATG 5 cut(s) 253, 274, 719, 955, 996
BstFNI CGCG 1 cut(s) 656
BstKTI GATC 1 cut(s) 354
BstMAI GTCTC 2 cut(s) 161, 235
BstMBI GATC 1 cut(s) 351
BstMWI GCNNNNNNNGC 1 cut(s) 749
BstNSI RCATGY 1 cut(s) 1011
BstSFI CTRYAG 2 cut(s) 218, 797
BstUI CGCG 1 cut(s) 656
BstV1I GCAGC 1 cut(s) 1043
BsuI GTATCC 1 cut(s) 219
BsuRI GGCC 3 cut(s) 369, 886, 897
BtgI CCRYGG 3 cut(s) 519, 619, 840
BtsCI GGATG 5 cut(s) 253, 274, 719, 955, 996
BtsIMutI CAGTG 2 cut(s) 72, 936
Cac8I GCNNGC 1 cut(s) 33
Cfr10I RCCGGY 1 cut(s) 743
Cfr13I GGNCC 1 cut(s) 320
Csp6I GTAC 3 cut(s) 4, 132, 708
CspCI CAANNNNNGTGG 2 cut(s) 822, 857
CviAII CATG 6 cut(s) 21, 520, 577, 643, 1008, 1045
CviQI GTAC 3 cut(s) 4, 132, 708
DdeI CTNAG 3 cut(s) 450, 483, 530
DpnI GATC 1 cut(s) 353
DpnII GATC 1 cut(s) 351
Eam1104I CTCTTC 1 cut(s) 875
EarI CTCTTC 1 cut(s) 875
Eco130I CCWWGG 1 cut(s) 519
Eco31I GGTCTC 1 cut(s) 235
Eco32I GATATC 1 cut(s) 627
Eco47I GGWCC 1 cut(s) 320
EcoO109I RGGNCCY 1 cut(s) 320
EcoRV GATATC 1 cut(s) 627
EcoT14I CCWWGG 1 cut(s) 519
ErhI CCWWGG 1 cut(s) 519
FaeI CATG 6 cut(s) 24, 523, 580, 646, 1011, 1048
FaqI GGGAC 2 cut(s) 333, 938
FatI CATG 6 cut(s) 20, 519, 576, 642, 1007, 1044
Fnu4HI GCNGC 1 cut(s) 1032
FokI GGATG 5 cut(s) 260, 281, 706, 962, 1003
Fsp4HI GCNGC 1 cut(s) 1032
FspBI CTAG 2 cut(s) 128, 135
GluI GCNGC 1 cut(s) 1032
GsaI CCCAGC 1 cut(s) 990
HaeIII GGCC 3 cut(s) 369, 886, 897
HapII CCGG 2 cut(s) 245, 744
Hin1II CATG 6 cut(s) 24, 523, 580, 646, 1011, 1048
HincII GTYRAC 2 cut(s) 565, 582
HindII GTYRAC 2 cut(s) 565, 582
HindIII AAGCTT 1 cut(s) 76
HinfI GANTC 6 cut(s) 177, 251, 362, 412, 599, 830
HpaII CCGG 2 cut(s) 245, 744
HphI GGTGA 3 cut(s) 301, 538, 565
Hpy166II GTNNAC 5 cut(s) 309, 391, 565, 582, 844
Hpy188I TCNGA 3 cut(s) 163, 500, 613
Hpy188III TCNNGA 2 cut(s) 359, 827
Hpy8I GTNNAC 5 cut(s) 309, 391, 565, 582, 844
HpyAV CCTTC 2 cut(s) 27, 580
HpyCH4III ACNGT 2 cut(s) 400, 931
HpyCH4IV ACGT 1 cut(s) 62
HpyCH4V TGCA 8 cut(s) 11, 31, 54, 719, 752, 799, 902, 1007
HpyF10VI GCNNNNNNNGC 1 cut(s) 749
HpyF3I CTNAG 3 cut(s) 450, 483, 530
HpySE526I ACGT 1 cut(s) 62
Hsp92II CATG 6 cut(s) 24, 523, 580, 646, 1011, 1048
Kzo9I GATC 1 cut(s) 351
LmnI GCTCC 1 cut(s) 521
Lsp1109I GCAGC 1 cut(s) 1043
LweI GCATC 2 cut(s) 676, 728
MaeI CTAG 2 cut(s) 128, 135
MaeII ACGT 1 cut(s) 62
MaeIII GTNAC 3 cut(s) 206, 509, 544
MalI GATC 1 cut(s) 353
MboI GATC 1 cut(s) 351
MboII GAAGA 3 cut(s) 779, 782, 892
MluCI AATT 4 cut(s) 235, 276, 834, 1035
MmeI TCCRAC 1 cut(s) 186
MseI TTAA 4 cut(s) 89, 315, 758, 1038
MslI CAYNNNNRTG 1 cut(s) 41
MspI CCGG 2 cut(s) 245, 744
MvnI CGCG 1 cut(s) 656
MwoI GCNNNNNNNGC 1 cut(s) 749
NcoI CCATGG 1 cut(s) 519
NdeII GATC 1 cut(s) 351
NlaIII CATG 6 cut(s) 24, 523, 580, 646, 1011, 1048
NlaIV GGNNCC 2 cut(s) 321, 447
NmuCI GTSAC 2 cut(s) 509, 544
NspI RCATGY 1 cut(s) 1011
OliI CACNNNNGTG 1 cut(s) 41
PfeI GAWTC 6 cut(s) 177, 251, 362, 412, 599, 830
PflMI CCANNNNNTGG 1 cut(s) 893
PkrI GCNGC 1 cut(s) 1033
PpuMI RGGWCCY 1 cut(s) 320
Psp5II RGGWCCY 1 cut(s) 320
PspFI CCCAGC 1 cut(s) 986
PspN4I GGNNCC 2 cut(s) 321, 447
PspPI GGNCC 1 cut(s) 320
PspPPI RGGWCCY 1 cut(s) 320
PstI CTGCAG 1 cut(s) 801
RsaI GTAC 3 cut(s) 5, 133, 709
RsaNI GTAC 3 cut(s) 4, 132, 708
RseI CAYNNNNRTG 1 cut(s) 41
SaqAI TTAA 4 cut(s) 89, 315, 758, 1038
SatI GCNGC 1 cut(s) 1032
Sau3AI GATC 1 cut(s) 351
Sau96I GGNCC 1 cut(s) 320
SfaNI GCATC 2 cut(s) 676, 728
SfcI CTRYAG 2 cut(s) 218, 797
SinI GGWCC 1 cut(s) 320
SmiMI CAYNNNNRTG 1 cut(s) 41
SpeI ACTAGT 1 cut(s) 134
Sse9I AATT 4 cut(s) 235, 276, 834, 1035
SsiI CCGC 1 cut(s) 656
SspMI CTAG 2 cut(s) 128, 135
StyI CCWWGG 1 cut(s) 519
TaaI ACNGT 2 cut(s) 400, 931
TaiI ACGT 1 cut(s) 65
TaqI TCGA 2 cut(s) 233, 465
TasI AATT 4 cut(s) 235, 276, 834, 1035
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 6 cut(s) 177, 251, 362, 412, 599, 830
Tru1I TTAA 4 cut(s) 89, 315, 758, 1038
Tru9I TTAA 4 cut(s) 89, 315, 758, 1038
TscAI CASTG 2 cut(s) 72, 936
TseFI GTSAC 2 cut(s) 509, 544
TseI GCWGC 1 cut(s) 1031
Tsp45I GTSAC 2 cut(s) 509, 544
TspDTI ATGAA 4 cut(s) 9, 114, 264, 893
TspGWI ACGGA 1 cut(s) 829
TspRI CASTG 2 cut(s) 72, 936
Van91I CCANNNNNTGG 1 cut(s) 893
VpaK11BI GGWCC 1 cut(s) 320
XapI RAATTY 1 cut(s) 235
XceI RCATGY 1 cut(s) 1011
XcmI CCANNNNNNNNNTGG 1 cut(s) 697
XspI CTAG 2 cut(s) 128, 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.