Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007276.1

Orthogroup ID

OG0011186

Physical Location & Seq

Genomic Coordinates Forward (+)

83461 .. 84384

Gene Structure 924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

atgacactccgacctcacactctcttcctccctcaagcctccttaacccccccatctcctaaaccctccaaaaacccttccaactccttcaccccaactctcaattccccaatctacccctccctctccctccaccaccacccaaccacccccaccgactccggcatcctcttccgcgaaaagctcatctacctcgaaacccacctcaacgtcaatccccgaaaagccctccatctaaacccggacttccgctcctgccccctctcctccgtcaagtccgtcgagcactgcctctcctccatgggcatcgagctctccgccatgggccgcatcctggacatgcacccccagctcctcaccgtggacccccactcccacctctaccccgtcttcgacttcctcctccacgacgcccatatccccttccacgatatccgcaagtccatcatccgctgccccaggctcctcgtctgtgacgtcagcgaccaactccgaccggccttggagttcctgacccaactaggttttaagggcgtgacgtgccagaccacggtcctattggtctcgagcgtcagaggtacccttttgcccaagattgagtatttgcagagtctggggctgagtcacgcggaggtggccaacatggtgataaggtcgccggcgctgttgactctaagcatacacaacaatttcatgccgaaagtcgagtatttagtgcaagagatgaagaaagatgtgaaggagctcaagaggtttccgcagtacttttcgtttagtttggaggggaggattaagcctaggcacagattgttggctgagcacggcttttcgcttccgttgagggacatgttgagggttagtgatggcgagtttaatgctatgttgattgagatgcgattggattgcagaggcttgactcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

307

Amino Acids

34.85

Weight (kDa)

9.03

Isoelectric Point (pI)

44.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	144 - 291	6.1e-32	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03050 AT2G03050
fragaria_vesca	FvH4_4g31180
malus_domestica	MD09G1014700.v1.1 MD16G1071200.v1.1
prunus_persica	Prupe.1G276500_v2.0.a1
pyrus_communis	pycom111g01200 pycom16g06160
rosa_chinensis	RchiOBHm_Chr4g0439561
rosa_laevigata	RLG00000006258
rosa_multiflora	Rmu_co8324741.1_g000001 Rmu_sc0002549.1_g000029 Rmu_sc0007276.1_g000015
rosa_roxburghii	Rroxscaffold_5G00380480
rosa_rugosa	Rorug04G0319900
rosa_samantha	Rh4AG370800 Rh4BG382600 Rh4CG397200 Rh4DG377400
rosa_wichuraiana	Rw4G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	480
Acc65I	GGTACC	1 cut(s)	578
AccB1I	GGYRCC	1 cut(s)	578
AccBSI	CCGCTC	1 cut(s)	252
AccII	CGCG	2 cut(s)	177, 629
AciI	CCGC	8 cut(s)	175, 250, 318, 328, 436, 451, 629, 758
AcoI	YGGCCR	1 cut(s)	636
AcyI	GRCGYC	2 cut(s)	411, 477
AfaI	GTAC	2 cut(s)	580, 764
AfiI	CCNNNNNNNGG	3 cut(s)	334, 361, 550
AflIII	ACRYGT	1 cut(s)	846
AjiI	CACGTC	1 cut(s)	540
AjnI	CCWGG	2 cut(s)	333, 458
AjuI	GAANNNNNNNTTGG	2 cut(s)	88, 120
AluBI	AGCT	4 cut(s)	184, 313, 352, 745
AluI	AGCT	4 cut(s)	184, 313, 352, 745
Alw21I	GWGCWC	4 cut(s)	288, 315, 747, 822
Alw26I	GTCTC	1 cut(s)	568
AlwNI	CAGNNNCTG	1 cut(s)	613
Ama87I	CYCGRG	1 cut(s)	565
AoxI	GGCC	3 cut(s)	325, 498, 636
ApeKI	GCWGC	1 cut(s)	453
Asp718I	GGTACC	1 cut(s)	578
AspA2I	CCTAGG	1 cut(s)	797
AspLEI	GCGC	1 cut(s)	664
AspS9I	GGNCC	3 cut(s)	325, 364, 553
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	3 cut(s)	82, 349, 658
AvaI	CYCGRG	1 cut(s)	565
AvaII	GGWCC	2 cut(s)	364, 553
AvrII	CCTAGG	1 cut(s)	797
BalI	TGGCCA	1 cut(s)	638
BanI	GGYRCC	1 cut(s)	578
BanII	GRGCYC	2 cut(s)	315, 747
BbsI	GAAGAC	1 cut(s)	382
Bbv12I	GWGCWC	4 cut(s)	288, 315, 747, 822
BbvI	GCAGC	1 cut(s)	440
BccI	CCATC	4 cut(s)	61, 240, 452, 857
BceAI	ACGGC	1 cut(s)	838
BcgI	CGANNNNNNTGC	4 cut(s)	857, 885, 891, 919
BciT130I	CCWGG	2 cut(s)	335, 460
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	568
BfaI	CTAG	2 cut(s)	521, 798
BfoI	RGCGCY	1 cut(s)	665
BisI	GCNGC	2 cut(s)	328, 454
BlnI	CCTAGG	1 cut(s)	797
BlpI	GCTNAGC	1 cut(s)	816
BlsI	GCNGC	2 cut(s)	329, 455
BmcAI	AGTACT	1 cut(s)	764
Bme1390I	CCNGG	3 cut(s)	242, 335, 460
Bme18I	GGWCC	2 cut(s)	364, 553
BmeT110I	CYCGRG	1 cut(s)	565
BmgBI	CACGTC	1 cut(s)	540
BmgT120I	GGNCC	3 cut(s)	325, 364, 553
BmiI	GGNNCC	3 cut(s)	366, 464, 580
BmrFI	CCNGG	3 cut(s)	242, 335, 460
BmsI	GCATC	4 cut(s)	174, 315, 339, 882
BoxI	GACNNNNGTC	1 cut(s)	551
BpiI	GAAGAC	1 cut(s)	382
Bpu1102I	GCTNAGC	1 cut(s)	816
BpuEI	CTTGAG	2 cut(s)	18, 731
BpuMI	CCSGG	1 cut(s)	242
BsaHI	GRCGYC	2 cut(s)	411, 477
BsaI	GGTCTC	1 cut(s)	568
BsaJI	CCNNGG	7 cut(s)	300, 321, 360, 458, 501, 549, 797
BsaXI	ACNNNNNCTCC	6 cut(s)	236, 266, 278, 308, 356, 386
Bsc4I	CCNNNNNNNGG	3 cut(s)	334, 361, 550
Bse118I	RCCGGY	2 cut(s)	496, 658
BseBI	CCWGG	2 cut(s)	335, 460
BseDI	CCNNGG	7 cut(s)	300, 321, 360, 458, 501, 549, 797
BseGI	GGATG	3 cut(s)	165, 330, 447
BseLI	CCNNNNNNNGG	3 cut(s)	334, 361, 550
BseMII	CTCAG	2 cut(s)	611, 807
BseRI	GAGGAG	5 cut(s)	256, 286, 344, 392, 455
BseXI	GCAGC	1 cut(s)	440
BseYI	CCCAGC	1 cut(s)	348
Bsh1236I	CGCG	2 cut(s)	177, 629
Bsh1285I	CGRYCG	1 cut(s)	497
BshFI	GGCC	3 cut(s)	327, 500, 638
BshNI	GGYRCC	1 cut(s)	578
BsiEI	CGRYCG	1 cut(s)	497
BsiHKAI	GWGCWC	4 cut(s)	288, 315, 747, 822
BsiHKCI	CYCGRG	1 cut(s)	565
BsiSI	CCGG	4 cut(s)	162, 242, 497, 659
BslFI	GGGAC	1 cut(s)	857
BslI	CCNNNNNNNGG	3 cut(s)	334, 361, 550
BsmAI	GTCTC	1 cut(s)	568
BsmFI	GGGAC	1 cut(s)	857
BsnI	GGCC	3 cut(s)	327, 500, 638
Bso31I	GGTCTC	1 cut(s)	568
BsoBI	CYCGRG	1 cut(s)	565
Bsp1286I	GDGCHC	4 cut(s)	288, 315, 747, 822
Bsp1720I	GCTNAGC	1 cut(s)	816
Bsp19I	CCATGG	2 cut(s)	300, 321
BspACI	CCGC	8 cut(s)	175, 250, 318, 328, 436, 451, 629, 758
BspANI	GGCC	3 cut(s)	327, 500, 638
BspCNI	CTCAG	2 cut(s)	612, 808
BspFNI	CGCG	2 cut(s)	177, 629
BspLI	GGNNCC	3 cut(s)	366, 464, 580
BspT107I	GGYRCC	1 cut(s)	578
BspTNI	GGTCTC	1 cut(s)	568
BsrBI	CCGCTC	1 cut(s)	252
BsrFI	RCCGGY	2 cut(s)	496, 658
BssAI	RCCGGY	2 cut(s)	496, 658
BssECI	CCNNGG	7 cut(s)	300, 321, 360, 458, 501, 549, 797
BssNI	GRCGYC	2 cut(s)	411, 477
BssT1I	CCWWGG	4 cut(s)	300, 321, 501, 797
Bst2UI	CCWGG	2 cut(s)	335, 460
Bst4CI	ACNGT	2 cut(s)	361, 553
Bst6I	CTCTTC	2 cut(s)	29, 176
BstACI	GRCGYC	2 cut(s)	411, 477
BstC8I	GCNNGC	1 cut(s)	660
BstDEI	CTNAG	3 cut(s)	620, 674, 816
BstDSI	CCRYGG	4 cut(s)	300, 321, 360, 549
BstF5I	GGATG	3 cut(s)	165, 330, 447
BstFNI	CGCG	2 cut(s)	177, 629
BstH2I	RGCGCY	1 cut(s)	665
BstHHI	GCGC	1 cut(s)	664
BstMAI	GTCTC	1 cut(s)	568
BstMCI	CGRYCG	1 cut(s)	497
BstMWI	GCNNNNNNNGC	3 cut(s)	349, 540, 635
BstNI	CCWGG	2 cut(s)	335, 460
BstNSI	RCATGY	2 cut(s)	343, 850
BstPAI	GACNNNNGTC	1 cut(s)	551
BstSCI	CCNGG	3 cut(s)	240, 333, 458
BstUI	CGCG	2 cut(s)	177, 629
BstV1I	GCAGC	1 cut(s)	440
BstV2I	GAAGAC	1 cut(s)	382
BsuRI	GGCC	3 cut(s)	327, 500, 638
BtgI	CCRYGG	4 cut(s)	300, 321, 360, 549
BtrI	CACGTC	1 cut(s)	540
BtsCI	GGATG	3 cut(s)	165, 330, 447
BtsI	GCAGTG	1 cut(s)	286
BtsIMutI	CAGTG	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	660
CaiI	CAGNNNCTG	1 cut(s)	613
CfoI	GCGC	1 cut(s)	664
Cfr10I	RCCGGY	2 cut(s)	496, 658
Cfr13I	GGNCC	3 cut(s)	325, 364, 553
CseI	GACGC	2 cut(s)	419, 559
Csp6I	GTAC	2 cut(s)	579, 763
CviAII	CATG	6 cut(s)	301, 322, 340, 643, 694, 847
CviQI	GTAC	2 cut(s)	579, 763
DdeI	CTNAG	3 cut(s)	620, 674, 816
EaeI	YGGCCR	1 cut(s)	636
Eam1104I	CTCTTC	2 cut(s)	29, 176
EarI	CTCTTC	2 cut(s)	29, 176
EciI	GGCGGA	1 cut(s)	307
Ecl136II	GAGCTC	2 cut(s)	313, 745
Eco130I	CCWWGG	4 cut(s)	300, 321, 501, 797
Eco24I	GRGCYC	2 cut(s)	315, 747
Eco31I	GGTCTC	1 cut(s)	568
Eco32I	GATATC	1 cut(s)	433
Eco47I	GGWCC	2 cut(s)	364, 553
Eco53kI	GAGCTC	2 cut(s)	313, 745
Eco88I	CYCGRG	1 cut(s)	565
EcoICRI	GAGCTC	2 cut(s)	313, 745
EcoRII	CCWGG	2 cut(s)	333, 458
EcoRV	GATATC	1 cut(s)	433
EcoT14I	CCWWGG	4 cut(s)	300, 321, 501, 797
EcoT38I	GRGCYC	2 cut(s)	315, 747
ErhI	CCWWGG	4 cut(s)	300, 321, 501, 797
FaeI	CATG	6 cut(s)	304, 325, 343, 646, 697, 850
FaiI	YATR	9 cut(s)	302, 323, 341, 417, 644, 680, 695, 848, 881
FaqI	GGGAC	1 cut(s)	857
FatI	CATG	6 cut(s)	300, 321, 339, 642, 693, 846
Fnu4HI	GCNGC	2 cut(s)	328, 454
FokI	GGATG	3 cut(s)	152, 317, 434
FriOI	GRGCYC	2 cut(s)	315, 747
Fsp4HI	GCNGC	2 cut(s)	328, 454
FspBI	CTAG	2 cut(s)	521, 798
GlaI	GCGC	1 cut(s)	663
GluI	GCNGC	2 cut(s)	328, 454
GsaI	CCCAGC	1 cut(s)	352
HaeII	RGCGCY	1 cut(s)	665
HaeIII	GGCC	3 cut(s)	327, 500, 638
HapII	CCGG	4 cut(s)	162, 242, 497, 659
HgaI	GACGC	2 cut(s)	419, 559
HhaI	GCGC	1 cut(s)	664
Hin1I	GRCGYC	2 cut(s)	411, 477
Hin1II	CATG	6 cut(s)	304, 325, 343, 646, 697, 850
Hin6I	GCGC	1 cut(s)	662
HinP1I	GCGC	1 cut(s)	662
HincII	GTYRAC	1 cut(s)	669
HindII	GTYRAC	1 cut(s)	669
HinfI	GANTC	5 cut(s)	158, 610, 622, 670, 916
HpaII	CCGG	4 cut(s)	162, 242, 497, 659
HphI	GGTGA	3 cut(s)	82, 349, 658
Hpy166II	GTNNAC	2 cut(s)	364, 669
Hpy188I	TCNGA	3 cut(s)	11, 494, 575
Hpy188III	TCNNGA	3 cut(s)	511, 565, 748
Hpy8I	GTNNAC	2 cut(s)	364, 669
Hpy99I	CGWCG	2 cut(s)	284, 413
HpyAV	CCTTC	4 cut(s)	87, 97, 433, 733
HpyCH4III	ACNGT	2 cut(s)	361, 553
HpyCH4IV	ACGT	3 cut(s)	210, 477, 539
HpyCH4V	TGCA	4 cut(s)	343, 607, 718, 906
HpyF10VI	GCNNNNNNNGC	3 cut(s)	349, 540, 635
HpyF3I	CTNAG	3 cut(s)	620, 674, 816
HpySE526I	ACGT	3 cut(s)	210, 477, 539
Hsp92I	GRCGYC	2 cut(s)	411, 477
Hsp92II	CATG	6 cut(s)	304, 325, 343, 646, 697, 850
HspAI	GCGC	1 cut(s)	662
KpnI	GGTACC	1 cut(s)	582
KroI	GCCGGC	1 cut(s)	658
KroNI	GCCGGC	1 cut(s)	660
LmnI	GCTCC	4 cut(s)	257, 357, 468, 742
Lsp1109I	GCAGC	1 cut(s)	440
LweI	GCATC	4 cut(s)	174, 315, 339, 882
MaeI	CTAG	2 cut(s)	521, 798
MaeII	ACGT	3 cut(s)	210, 477, 539
MaeIII	GTNAC	3 cut(s)	473, 535, 623
MbiI	CCGCTC	1 cut(s)	252
MboII	GAAGA	4 cut(s)	16, 163, 382, 739
MhlI	GDGCHC	4 cut(s)	288, 315, 747, 822
MlsI	TGGCCA	1 cut(s)	638
MluCI	AATT	2 cut(s)	103, 688
MluNI	TGGCCA	1 cut(s)	638
MlyI	GAGTC	5 cut(s)	152, 619, 631, 664, 910
MmeI	TCCRAC	3 cut(s)	34, 105, 517
Mox20I	TGGCCA	1 cut(s)	638
MreI	CGCCGGCG	1 cut(s)	658
MroNI	GCCGGC	1 cut(s)	658
MscI	TGGCCA	1 cut(s)	638
MseI	TTAA	5 cut(s)	44, 528, 792, 873, 922
Msp20I	TGGCCA	1 cut(s)	638
MspA1I	CMGCKG	1 cut(s)	453
MspI	CCGG	4 cut(s)	162, 242, 497, 659
MspR9I	CCNGG	3 cut(s)	242, 335, 460
MvaI	CCWGG	2 cut(s)	335, 460
MvnI	CGCG	2 cut(s)	177, 629
MwoI	GCNNNNNNNGC	3 cut(s)	349, 540, 635
NaeI	GCCGGC	1 cut(s)	660
NciI	CCSGG	1 cut(s)	242
NcoI	CCATGG	2 cut(s)	300, 321
NgoMIV	GCCGGC	1 cut(s)	658
NlaIII	CATG	6 cut(s)	304, 325, 343, 646, 697, 850
NlaIV	GGNNCC	3 cut(s)	366, 464, 580
NmuCI	GTSAC	3 cut(s)	473, 535, 623
NspI	RCATGY	2 cut(s)	343, 850
PaeR7I	CTCGAG	1 cut(s)	565
PciI	ACATGT	1 cut(s)	846
PcsI	WCGNNNNNNNCGW	1 cut(s)	474
PdiI	GCCGGC	1 cut(s)	660
PfoI	TCCNGGA	1 cut(s)	333
PkrI	GCNGC	2 cut(s)	329, 455
PleI	GAGTC	5 cut(s)	152, 618, 630, 664, 910
PpsI	GAGTC	5 cut(s)	152, 618, 630, 664, 910
PscI	ACATGT	1 cut(s)	846
PshAI	GACNNNNGTC	1 cut(s)	551
Psp124BI	GAGCTC	2 cut(s)	315, 747
Psp6I	CCWGG	2 cut(s)	333, 458
PspFI	CCCAGC	1 cut(s)	348
PspGI	CCWGG	2 cut(s)	333, 458
PspN4I	GGNNCC	3 cut(s)	366, 464, 580
PspPI	GGNCC	3 cut(s)	325, 364, 553
PstNI	CAGNNNCTG	1 cut(s)	613
RsaI	GTAC	2 cut(s)	580, 764
RsaNI	GTAC	2 cut(s)	579, 763
SacI	GAGCTC	2 cut(s)	315, 747
SaqAI	TTAA	5 cut(s)	44, 528, 792, 873, 922
SatI	GCNGC	2 cut(s)	328, 454
Sau96I	GGNCC	3 cut(s)	325, 364, 553
ScaI	AGTACT	1 cut(s)	764
SchI	GAGTC	5 cut(s)	152, 619, 631, 664, 910
ScrFI	CCNGG	3 cut(s)	242, 335, 460
SduI	GDGCHC	4 cut(s)	288, 315, 747, 822
SfaNI	GCATC	4 cut(s)	174, 315, 339, 882
Sfr274I	CTCGAG	1 cut(s)	565
SgrAI	CRCCGGYG	1 cut(s)	658
SinI	GGWCC	2 cut(s)	364, 553
SlaI	CTCGAG	1 cut(s)	565
SmlI	CTYRAG	3 cut(s)	33, 565, 746
SmoI	CTYRAG	3 cut(s)	33, 565, 746
Sse9I	AATT	2 cut(s)	103, 688
SsiI	CCGC	8 cut(s)	175, 250, 318, 328, 436, 451, 629, 758
SspMI	CTAG	2 cut(s)	521, 798
SstI	GAGCTC	2 cut(s)	315, 747
StyD4I	CCNGG	3 cut(s)	240, 333, 458
StyI	CCWWGG	4 cut(s)	300, 321, 501, 797
TaaI	ACNGT	2 cut(s)	361, 553
TaiI	ACGT	3 cut(s)	213, 480, 542
TaqI	TCGA	6 cut(s)	195, 282, 309, 393, 566, 705
TasI	AATT	2 cut(s)	103, 688
TatI	WGTACW	1 cut(s)	762
TauI	GCSGC	1 cut(s)	330
Tru1I	TTAA	5 cut(s)	44, 528, 792, 873, 922
Tru9I	TTAA	5 cut(s)	44, 528, 792, 873, 922
TscAI	CASTG	1 cut(s)	293
TseFI	GTSAC	3 cut(s)	473, 535, 623
TseI	GCWGC	1 cut(s)	453
Tsp45I	GTSAC	3 cut(s)	473, 535, 623
TspDTI	ATGAA	2 cut(s)	682, 740
TspGWI	ACGGA	3 cut(s)	259, 268, 825
TspRI	CASTG	1 cut(s)	293
VpaK11BI	GGWCC	2 cut(s)	364, 553
XceI	RCATGY	2 cut(s)	343, 850
XcmI	CCANNNNNNNNNTGG	1 cut(s)	556
XhoI	CTCGAG	1 cut(s)	565
XmaJI	CCTAGG	1 cut(s)	797
XspI	CTAG	2 cut(s)	521, 798
ZraI	GACGTC	1 cut(s)	478
ZrmI	AGTACT	1 cut(s)	764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.