Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007338.1

Orthogroup ID

OG0008205

Physical Location & Seq

Genomic Coordinates Reverse (-)

23555 .. 30664

Gene Structure 7110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4323 bp

atggttggcagagatgacatagagtcgcttagaattgagttggaagagataggaagaagctttaggtcatcaattcagagtcgtaactccagtttccgagccaattcagcattgagttctgccaaagatgacactgatgctcaatatgctgtgcagtgggcagccattgagagactgccaacgtttgaacggctcaaatcatctttgtttgacaagggtgatgatggaaatgaacttgatggtgaaggaaagcaggtggttgatgttaccaagcttggagctatggaaaagcatgtcttcatagataagctcatcaagcacattgagaatgacaaccttcgtctcttacgtaaaatcagaaaaaggatagacaaggttggagtaaagttgcccactgtggaggtgaggtataagaatctcagtgtcgaagcagtgtgtgaggtagttcatggaaagcccctcccaactctttggaactctgtcagaagcacgctttctctctttgccaagtttctaggttccaagacacaagaggccaagataagcattatcaaagacttttgtggttcaataaagcctggaaggttaactttactgcttggccccccaggatgtgggaagacctcctttttaaaggctctatcaggaaatctggaaaaatcgctcaagttctctggtgaagttacttacaatggacagaagctagcagagttcatcccccagaaaacatcagcttatataagccaattcgacctgcatattcctcagatgactgtcagggaaatacttgatttttcagctcgctgtcagggtattggaagccgagccgatattatgctggaagtcagtaaaagggagaaggaggcagggattattccacatccagatatagatacttacatgaaggcaatttctctcgaaggactgaaaagaaccctccagacggactacattttgaagatccttggacttgatatatgtgctgacactctagttggagatgccatgctaagaggtatatctggtggtcaaaagaagaggttgacaacagcggagatgatcattggtcccacaaaagctttgttcatggatgagataacaaatggtctagacagttccactgcatttcaaattgttgcttgtcttcagcagctggtgcatataacagattctactttactagtttctcttcttcagccagcaccggagacatttgagctcttcgatgaccttattttaatgtcagaagggaagattgtttatcatggtccacgggatcatgtcttggagttttttgaggattgtgggttcaagtgtcctgagaggaaaggggttgctgatttcatccaagaggtaatctctaagaaagatcaagcacactattggtaccgcatggaacctcacaattatgtctcagttgatatgttctcaaaaaaattaaaggcatcttcttttgggaagaagctagatgaggatcttttagagccatttgataagcttaaagacaataacaatgctctttcctttagtgtgtattctctttctaaatgggaactttttagagcttgttcgtcaagagaacttcttctcatgaagaggaattcttttatctatgtattcaagacagttcagattatcatcattgcatttatcaccatgactgtatttctgaggactcgtatggatattgatgttcttcatgcaaactactacatgggttccctattctttgctcttaccatacttctcgtggatggaattcctgagttgtctatgacacttcaaagactagaagttttctataagcagagagacctgtgtttttatccagcttgggcttatgcaattccggcaacactactgaaagtacctgtttcatttgtggaagccctggtttggacttctcttacttactttgtcattggatacagtcctgagttccaaaagttcatcctccagttctttctactttttgccgttcatttaacatcaatatccatgtttcgcttcctggcatcattctttcagaccatggttgccgcaatgacagccggtagttttgcaatattgtttctgttactattcagcggattcattatcaaaaaaccttccatgcctggttggttagggtggggattttgggtttccccactgacatatggggagataggcctctctgtgaacgagtttctttctccaagatggcaaacaatgccatcaacaaacattactatcgggcatgaaacccttgaaagccgtggactaaactttgatggatatttctactggatatcacttggtgccttatttggattcacaatgattttcaacataggatacatcttgtccttgagtttcttgaagtctcccggatcatctcatggtatcatttcacatgaaaagcttgcccaaattcaaagaactgatgattccctcgatgatgcccaagtgaaagaaaagtctagaattcatccttctaaaaccactggcaagatggtcttaccctttactccattgacactggttttccaagatgtgcaatactatgttattcctatggaaaccagggagccaggatttaatcagaagaaacttcaacttctaagtgacattacaggggcatttagacctggtgttcttacagcattgatgggcgtcagtggcgctgggaaaactactcttcttgatgttctggcaggcagaaagactactggttgcattgaaggagacataaagattggtggatatcccaaggttcaagaaacatttgctagggtattgggttactgtgagcaaaccgatgttcattctccacaaatcactgtagaagagtctttgatgttttctgcttggctgcgcctggcttctcagattgactcaaagacaaaaactgagtttgtcaatgaagtccttgagaccattgagcttgatggaataaaagatgccttggttggaatacctggtgttagtggtctatcaaatgagcagcgtaagaggcttacaattgctgtcgagcttgtttcaaatccctccataatcttcatggatgaacctacaactggtttggatgcaagagctgcagcaatagtcatgcgagcagtgaagaatgtagctgatacgggaagaacaattgtttgcaccatccaccaaccaaatattgatatatttgaagcatttgatgagctaattcttttgaaaactggagggcgtatgatctactcaggacaggtgggtcagcactcgagtagagttatcgaatattttcagagtattcctggcgttcaaaagatcaaaagtaactacaatccagctacatggatgttagacatcacttctacaccagctgaagctgaacatggtattgattttgcccaaatatacagagaatctagtttatatgggaataatatagagcttgcaagacagttgagtactccacctcctggttccagagatctgcattttgctacacgcttttcacaaaatggctggatgcagttcaaatcttgcctatggaagcagcacttgtcttattggaggagtccgtcatataacttgatgcgcatcatgcatacggttgtatcatctttaattttcgggacattgtattggaaccaagggaggaaaataaccgaccagcagaacttattcaatatacttggttctatgtatgccggtgtcatcttcttgggcataaataactgcgcaactgttctgcaatatgttgccacagagagaactgtcatgtatcgtgaaaaatttgtggggatgtattcaccattggccttttcggttgcacaggtggtggttgaacttccctatatatttatccaggcagtcttatttatgatcatcacatatccaatgattgggtattatgcttcagcatataaggttttctggtacttctatgccttattttgttcactgctatactacaattacatgggaatgatgctcgtttcgttgacgccaaacttcatggtagctggaattctatcttcagtgttctacacagtgtataacctgtttgctggttttttgattcctaagccgcaaattccgaaatggtggatttggttgtattacctgactccctcatcttggtcactaaatggtttgctcacttcacaatatggagacataaacaaggagattatcatatttggggaacccaaaacagtgtctgccttcttgaaagactactttgggtttcaccatgatcagttggctctggtggcactagttctcattgcatttcccatagcttttgcatctattttcgcctactgtatcggacggttgaacttccagaggaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0009506 GO:0009719 GO:0009725 GO:0009733 GO:0009914 GO:0009926 GO:0009987 GO:0010033 GO:0010243 GO:0010817 GO:0014070 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022622 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071365 GO:0071366 GO:0071407 GO:0071417 GO:0071495 GO:0071944 GO:0080026 GO:0099402 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1440

Amino Acids

162.62

Weight (kDa)

8.27

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_trans_N	PF14510	110 - 159	3.8e-06	ABC-transporter N-terminal
ABC_tran	PF00005	188 - 368	2.5e-18	ABC transporter
ABC2_membrane_7	PF19055	399 - 452	2.6e-06	ABC-2 type transporter
ABC2_membrane	PF01061	519 - 730	2.8e-46	ABC-2 type transporter
PDR_assoc	PF08370	735 - 797	4.6e-21	Plant PDR ABC transporter associated
ABC_tran	PF00005	868 - 1020	7.3e-21	ABC transporter
ABC2_membrane	PF01061	1166 - 1379	6.3e-57	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37280 AT2G37280 AT2G37280 AT2G37280 AT3G53480
fragaria_vesca	FvH4_6g08380 FvH4_6g08380 FvH4_6g08380
malus_domestica	MD04G1187600.v1.1
prunus_persica	Prupe.6G306100_v2.0.a1
pyrus_communis	pycom04g16590
rosa_chinensis	RchiOBHm_Chr3g0458321
rosa_laevigata	RLG00000025169
rosa_multiflora	Rmu_sc0007338.1_g000006
rosa_roxburghii	Rroxscaffold_6G00421170
rosa_rugosa	Rorug03G0025800 Rorug03G0025800 Rorug03G0025800
rosa_samantha	Rh3AG086600 Rh3BG089400 Rh3CG089800 Rh3DG090400
rosa_wichuraiana	Rw3G007350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	244
AasI	GACNNNNNNGTC	1 cut(s)	3231
Acc16I	TGCGCA	2 cut(s)	3563, 3706
Acc36I	ACCTGC	2 cut(s)	244, 762
Acc65I	GGTACC	1 cut(s)	1386
AccB1I	GGYRCC	2 cut(s)	1386, 2300
AccB7I	CCANNNNNTGG	3 cut(s)	614, 3443, 3869
AciI	CCGC	5 cut(s)	1052, 1390, 2040, 2088, 4055
AclI	AACGTT	1 cut(s)	182
AclWI	GGATC	4 cut(s)	955, 1284, 1482, 2380
AcsI	RAATTY	7 cut(s)	1600, 1758, 2412, 2466, 3758, 3993, 4059
AcuI	CTGAAG	5 cut(s)	1130, 1178, 3366, 3867, 3987
AcyI	GRCGYC	2 cut(s)	2655, 3971
AdeI	CACNNNGTG	1 cut(s)	2300
AfaI	GTAC	4 cut(s)	1388, 1869, 3433, 3905
AfiI	CCNNNNNNNGG	7 cut(s)	614, 943, 1896, 3059, 3443, 3869, 4104
AhdI	GACNNNNNGTC	1 cut(s)	22
AhlI	ACTAGT	2 cut(s)	1180, 4243
AloI	GAACNNNNNNTCC	2 cut(s)	1292, 1324
Alw21I	GWGCWC	1 cut(s)	1221
Alw26I	GTCTC	9 cut(s)	166, 347, 1202, 1417, 1806, 2370, 2721, 2909, 4134
AlwI	GGATC	4 cut(s)	955, 1284, 1482, 2380
AlwNI	CAGNNNCTG	2 cut(s)	1153, 4187
Ama87I	CYCGRG	1 cut(s)	3241
AoxI	GGCC	4 cut(s)	534, 601, 2170, 3783
ApeKI	GCWGC	7 cut(s)	161, 1150, 2854, 2986, 3077, 3080, 3520
ApoI	RAATTY	7 cut(s)	1600, 1758, 2412, 2466, 3758, 3993, 4059
Asp700I	GAANNNNTTC	3 cut(s)	1584, 3261, 3647
Asp718I	GGTACC	1 cut(s)	1386
AspLEI	GCGC	4 cut(s)	2666, 2859, 3564, 3707
AspS9I	GGNCC	3 cut(s)	602, 1067, 1268
AsuC2I	CCSGG	1 cut(s)	2370
AsuHPI	GGTGA	7 cut(s)	230, 254, 415, 689, 1645, 3768, 4208
AsuNHI	GCTAGC	1 cut(s)	703
AvaI	CYCGRG	1 cut(s)	3241
AvaII	GGWCC	2 cut(s)	1067, 1268
BaeI	ACNNNNGTAYC	2 cut(s)	3564, 3597
BanI	GGYRCC	2 cut(s)	1386, 2300
BanII	GRGCYC	1 cut(s)	1221
BauI	CACGAG	1 cut(s)	1748
BbsI	GAAGAC	3 cut(s)	289, 626, 1136
Bbv12I	GWGCWC	1 cut(s)	1221
BbvI	GCAGC	7 cut(s)	173, 1162, 2841, 2998, 3064, 3092, 3532
BceAI	ACGGC	3 cut(s)	206, 1961, 2241
BciVI	GTATCC	2 cut(s)	1919, 2330
BclI	TGATCA	3 cut(s)	1059, 3849, 4222
BcnI	CCSGG	1 cut(s)	2370
BcoDI	GTCTC	9 cut(s)	166, 347, 1202, 1417, 1806, 2370, 2721, 2909, 4134
BcuI	ACTAGT	2 cut(s)	1180, 4243
BfmI	CTRYAG	2 cut(s)	2823, 3078
BfoI	RGCGCY	1 cut(s)	2667
BfuAI	ACCTGC	2 cut(s)	244, 762
BfuI	GTATCC	2 cut(s)	1919, 2330
BglII	AGATCT	1 cut(s)	3454
BisI	GCNGC	9 cut(s)	162, 1151, 2040, 2855, 2987, 3078, 3081, 3521, 4055
BlsI	GCNGC	9 cut(s)	163, 1152, 2041, 2856, 2988, 3079, 3082, 3522, 4056
BmcAI	AGTACT	1 cut(s)	3433
Bme18I	GGWCC	2 cut(s)	1067, 1268
BmeRI	GACNNNNNGTC	1 cut(s)	22
BmeT110I	CYCGRG	1 cut(s)	3241
BmgT120I	GGNCC	3 cut(s)	602, 1067, 1268
BmtI	GCTAGC	1 cut(s)	707
BpiI	GAAGAC	3 cut(s)	289, 626, 1136
BplI	GAGNNNNNCTC	2 cut(s)	1343, 1375
BpmI	CTGGAG	4 cut(s)	73, 923, 1940, 3222
Bpu10I	CCTNAGC	1 cut(s)	4050
BpuEI	CTTGAG	3 cut(s)	650, 2371, 2933
BpuMI	CCSGG	1 cut(s)	2370
BsaAI	YACGTR	1 cut(s)	350
BsaBI	GATNNNNATC	3 cut(s)	1473, 1637, 3563
BsaHI	GRCGYC	2 cut(s)	2655, 3971
BsaI	GGTCTC	2 cut(s)	1806, 2909
BsaWI	WCCGGW	1 cut(s)	1204
BsaXI	ACNNNNNCTCC	4 cut(s)	392, 422, 3424, 3454
Bsc4I	CCNNNNNNNGG	7 cut(s)	614, 943, 1896, 3059, 3443, 3869, 4104
Bse118I	RCCGGY	2 cut(s)	2051, 3674
Bse1I	ACTGG	8 cut(s)	90, 1957, 2291, 2491, 2526, 2716, 3064, 3205
Bse3DI	GCAATG	3 cut(s)	1641, 2049, 4251
Bse8I	GATNNNNATC	3 cut(s)	1473, 1637, 3563
BseJI	GATNNNNATC	3 cut(s)	1473, 1637, 3563
BseLI	CCNNNNNNNGG	7 cut(s)	614, 943, 1896, 3059, 3443, 3869, 4104
BseMI	GCAATG	3 cut(s)	1641, 2049, 4251
BseNI	ACTGG	8 cut(s)	90, 1957, 2291, 2491, 2526, 2716, 3064, 3205
BseRI	GAGGAG	1 cut(s)	3553
BseXI	GCAGC	7 cut(s)	173, 1162, 2841, 2998, 3064, 3092, 3532
BseYI	CCCAGC	1 cut(s)	2666
BsgI	GTGCAG	1 cut(s)	173
BshFI	GGCC	4 cut(s)	536, 603, 2172, 3785
BshNI	GGYRCC	2 cut(s)	1386, 2300
BsiHKAI	GWGCWC	1 cut(s)	1221
BsiHKCI	CYCGRG	1 cut(s)	3241
BsiSI	CCGG	5 cut(s)	1205, 1850, 2052, 2370, 3675
BslFI	GGGAC	2 cut(s)	1053, 3613
BslI	CCNNNNNNNGG	7 cut(s)	614, 943, 1896, 3059, 3443, 3869, 4104
BsmAI	GTCTC	9 cut(s)	166, 347, 1202, 1417, 1806, 2370, 2721, 2909, 4134
BsmBI	CGTCTC	1 cut(s)	347
BsmFI	GGGAC	2 cut(s)	1053, 3613
BsnI	GGCC	4 cut(s)	536, 603, 2172, 3785
Bso31I	GGTCTC	2 cut(s)	1806, 2909
BsoBI	CYCGRG	1 cut(s)	3241
Bsp1286I	GDGCHC	1 cut(s)	1221
Bsp19I	CCATGG	1 cut(s)	2031
BspACI	CCGC	5 cut(s)	1052, 1390, 2040, 2088, 4055
BspANI	GGCC	4 cut(s)	536, 603, 2172, 3785
BspHI	TCATGA	1 cut(s)	1590
BspMAI	CTGCAG	1 cut(s)	3082
BspMI	ACCTGC	2 cut(s)	244, 762
BspOI	GCTAGC	1 cut(s)	707
BspPI	GGATC	4 cut(s)	955, 1284, 1482, 2380
BspQI	GCTCTTC	1 cut(s)	1226
BspT107I	GGYRCC	2 cut(s)	1386, 2300
BspTNI	GGTCTC	2 cut(s)	1806, 2909
BsrDI	GCAATG	3 cut(s)	1641, 2049, 4251
BsrFI	RCCGGY	2 cut(s)	2051, 3674
BsrI	ACTGG	8 cut(s)	90, 1957, 2291, 2491, 2526, 2716, 3064, 3205
BssAI	RCCGGY	2 cut(s)	2051, 3674
BssNI	GRCGYC	2 cut(s)	2655, 3971
BssSI	CACGAG	1 cut(s)	1748
BssT1I	CCWWGG	5 cut(s)	964, 2031, 2751, 2946, 3616
Bst2BI	CACGAG	1 cut(s)	1748
Bst6I	CTCTTC	7 cut(s)	39, 1031, 1194, 1226, 1589, 2685, 2823
BstACI	GRCGYC	2 cut(s)	2655, 3971
BstAPI	GCANNNNNTGC	3 cut(s)	1156, 2212, 3077
BstBAI	YACGTR	1 cut(s)	350
BstC8I	GCNNGC	8 cut(s)	491, 705, 802, 1200, 2406, 2698, 3096, 3417
BstDSI	CCRYGG	3 cut(s)	1271, 2031, 2257
BstH2I	RGCGCY	1 cut(s)	2667
BstHHI	GCGC	4 cut(s)	2666, 2859, 3564, 3707
BstMAI	GTCTC	9 cut(s)	166, 347, 1202, 1417, 1806, 2370, 2721, 2909, 4134
BstNSI	RCATGY	1 cut(s)	296
BstSFI	CTRYAG	2 cut(s)	2823, 3078
BstSNI	TACGTA	1 cut(s)	350
BstV1I	GCAGC	7 cut(s)	173, 1162, 2841, 2998, 3064, 3092, 3532
BstV2I	GAAGAC	3 cut(s)	289, 626, 1136
BstX2I	RGATCY	3 cut(s)	960, 1474, 3454
BstXI	CCANNNNNNTGG	2 cut(s)	471, 3315
BstYI	RGATCY	3 cut(s)	960, 1474, 3454
BsuI	GTATCC	2 cut(s)	1919, 2330
BsuRI	GGCC	4 cut(s)	536, 603, 2172, 3785
BtgI	CCRYGG	3 cut(s)	1271, 2031, 2257
BtsI	GCAGTG	5 cut(s)	161, 438, 1119, 3105, 3926
BveI	ACCTGC	2 cut(s)	244, 762
Cac8I	GCNNGC	8 cut(s)	491, 705, 802, 1200, 2406, 2698, 3096, 3417
CaiI	CAGNNNCTG	2 cut(s)	1153, 4187
CciI	TCATGA	1 cut(s)	1590
CfoI	GCGC	4 cut(s)	2666, 2859, 3564, 3707
Cfr10I	RCCGGY	2 cut(s)	2051, 3674
Cfr13I	GGNCC	3 cut(s)	602, 1067, 1268
CseI	GACGC	2 cut(s)	2644, 3979
CsiI	ACCWGGT	2 cut(s)	2629, 2959
Csp6I	GTAC	4 cut(s)	1387, 1868, 3432, 3904
CviQI	GTAC	4 cut(s)	1387, 1868, 3432, 3904
DraI	TTTAAA	1 cut(s)	633
DraIII	CACNNNGTG	1 cut(s)	2300
DrdI	GACNNNNNNGTC	1 cut(s)	3231
DriI	GACNNNNNGTC	1 cut(s)	22
DseDI	GACNNNNNNGTC	1 cut(s)	3231
Eam1104I	CTCTTC	7 cut(s)	39, 1031, 1194, 1226, 1589, 2685, 2823
Eam1105I	GACNNNNNGTC	1 cut(s)	22
EarI	CTCTTC	7 cut(s)	39, 1031, 1194, 1226, 1589, 2685, 2823
Ecl136II	GAGCTC	1 cut(s)	1219
Eco105I	TACGTA	1 cut(s)	350
Eco130I	CCWWGG	5 cut(s)	964, 2031, 2751, 2946, 3616
Eco147I	AGGCCT	1 cut(s)	2172
Eco24I	GRGCYC	1 cut(s)	1221
Eco31I	GGTCTC	2 cut(s)	1806, 2909
Eco32I	GATATC	2 cut(s)	2292, 2747
Eco47I	GGWCC	2 cut(s)	1067, 1268
Eco53kI	GAGCTC	1 cut(s)	1219
Eco57I	CTGAAG	5 cut(s)	1130, 1178, 3366, 3867, 3987
Eco88I	CYCGRG	1 cut(s)	3241
EcoICRI	GAGCTC	1 cut(s)	1219
EcoRI	GAATTC	4 cut(s)	1600, 1758, 2466, 3993
EcoRV	GATATC	2 cut(s)	2292, 2747
EcoT14I	CCWWGG	5 cut(s)	964, 2031, 2751, 2946, 3616
EcoT22I	ATGCAT	1 cut(s)	3573
EcoT38I	GRGCYC	1 cut(s)	1221
ErhI	CCWWGG	5 cut(s)	964, 2031, 2751, 2946, 3616
Esp3I	CGTCTC	1 cut(s)	347
FaqI	GGGAC	2 cut(s)	1053, 3613
FauNDI	CATATG	1 cut(s)	2158
FbaI	TGATCA	3 cut(s)	1059, 3849, 4222
Fnu4HI	GCNGC	9 cut(s)	162, 1151, 2040, 2855, 2987, 3078, 3081, 3521, 4055
FriOI	GRGCYC	1 cut(s)	1221
Fsp4HI	GCNGC	9 cut(s)	162, 1151, 2040, 2855, 2987, 3078, 3081, 3521, 4055
FspAI	RTGCGCAY	1 cut(s)	3563
FspI	TGCGCA	2 cut(s)	3563, 3706
GlaI	GCGC	4 cut(s)	2665, 2858, 3563, 3706
GluI	GCNGC	9 cut(s)	162, 1151, 2040, 2855, 2987, 3078, 3081, 3521, 4055
GsaI	CCCAGC	1 cut(s)	2670
GsuI	CTGGAG	4 cut(s)	73, 923, 1940, 3222
HaeII	RGCGCY	1 cut(s)	2667
HaeIII	GGCC	4 cut(s)	536, 603, 2172, 3785
HapII	CCGG	5 cut(s)	1205, 1850, 2052, 2370, 3675
HgaI	GACGC	2 cut(s)	2644, 3979
HhaI	GCGC	4 cut(s)	2666, 2859, 3564, 3707
Hin1I	GRCGYC	2 cut(s)	2655, 3971
Hin6I	GCGC	4 cut(s)	2664, 2857, 3562, 3705
HinP1I	GCGC	4 cut(s)	2664, 2857, 3562, 3705
HincII	GTYRAC	3 cut(s)	588, 1044, 3969
HindII	GTYRAC	3 cut(s)	588, 1044, 3969
HindIII	AAGCTT	5 cut(s)	58, 272, 1077, 1496, 2402
HpaI	GTTAAC	1 cut(s)	588
HpaII	CCGG	5 cut(s)	1205, 1850, 2052, 2370, 3675
HphI	GGTGA	7 cut(s)	230, 254, 415, 689, 1645, 3768, 4208
Hpy166II	GTNNAC	7 cut(s)	588, 1044, 1271, 2182, 2261, 3926, 3969
Hpy8I	GTNNAC	7 cut(s)	588, 1044, 1271, 2182, 2261, 3926, 3969
HpyCH4IV	ACGT	2 cut(s)	182, 349
HpySE526I	ACGT	2 cut(s)	182, 349
Hsp92I	GRCGYC	2 cut(s)	2655, 3971
HspAI	GCGC	4 cut(s)	2664, 2857, 3562, 3705
KpnI	GGTACC	1 cut(s)	1390
Ksp22I	TGATCA	3 cut(s)	1059, 3849, 4222
KspAI	GTTAAC	1 cut(s)	588
LguI	GCTCTTC	1 cut(s)	1226
LmnI	GCTCC	2 cut(s)	278, 2569
Lsp1109I	GCAGC	7 cut(s)	173, 1162, 2841, 2998, 3064, 3092, 3532
MabI	ACCWGGT	2 cut(s)	2629, 2959
MaeII	ACGT	2 cut(s)	182, 349
MaeIII	GTNAC	8 cut(s)	83, 265, 682, 2076, 2606, 2783, 3296, 4107
MfeI	CAATTG	2 cut(s)	3003, 3129
MflI	RGATCY	3 cut(s)	960, 1474, 3454
MhlI	GDGCHC	1 cut(s)	1221
MlyI	GAGTC	7 cut(s)	32, 88, 1669, 2840, 2870, 3550, 4087
MmeI	TCCRAC	4 cut(s)	21, 358, 976, 2932
Mph1103I	ATGCAT	1 cut(s)	3573
MroXI	GAANNNNTTC	3 cut(s)	1584, 3261, 3647
MseI	TTAA	8 cut(s)	587, 632, 1238, 1439, 1500, 1985, 2580, 3590
MslI	CAYNNNNRTG	2 cut(s)	1407, 3950
MspA1I	CMGCKG	4 cut(s)	1052, 1153, 2088, 3344
MspI	CCGG	5 cut(s)	1205, 1850, 2052, 2370, 3675
MunI	CAATTG	2 cut(s)	3003, 3129
NciI	CCSGG	1 cut(s)	2370
NcoI	CCATGG	1 cut(s)	2031
NdeI	CATATG	1 cut(s)	2158
NheI	GCTAGC	1 cut(s)	703
NmeAIII	GCCGAG	1 cut(s)	848
NmuCI	GTSAC	2 cut(s)	2606, 4107
NsbI	TGCGCA	2 cut(s)	3563, 3706
NsiI	ATGCAT	1 cut(s)	3573
NspI	RCATGY	1 cut(s)	296
PaeR7I	CTCGAG	1 cut(s)	3241
PagI	TCATGA	1 cut(s)	1590
PaqCI	CACCTGC	1 cut(s)	244
PceI	AGGCCT	1 cut(s)	2172
PciSI	GCTCTTC	1 cut(s)	1226
PcsI	WCGNNNNNNNCGW	1 cut(s)	346
PdmI	GAANNNNTTC	3 cut(s)	1584, 3261, 3647
PfeI	GAWTC	7 cut(s)	415, 1169, 2091, 2313, 2429, 3386, 4045
PflMI	CCANNNNNTGG	3 cut(s)	614, 3443, 3869
PfoI	TCCNGGA	1 cut(s)	2368
PkrI	GCNGC	9 cut(s)	163, 1152, 2041, 2856, 2988, 3079, 3082, 3522, 4056
PleI	GAGTC	7 cut(s)	31, 87, 1669, 2839, 2870, 3549, 4087
PpsI	GAGTC	7 cut(s)	31, 87, 1669, 2839, 2870, 3549, 4087
Ppu21I	YACGTR	1 cut(s)	350
Psp124BI	GAGCTC	1 cut(s)	1221
Psp1406I	AACGTT	1 cut(s)	182
PspFI	CCCAGC	1 cut(s)	2666
PspPI	GGNCC	3 cut(s)	602, 1067, 1268
PspXI	VCTCGAGB	1 cut(s)	3241
PstI	CTGCAG	1 cut(s)	3082
PstNI	CAGNNNCTG	2 cut(s)	1153, 4187
PsuI	RGATCY	3 cut(s)	960, 1474, 3454
PvuII	CAGCTG	2 cut(s)	1153, 3344
RsaI	GTAC	4 cut(s)	1388, 1869, 3433, 3905
RsaNI	GTAC	4 cut(s)	1387, 1868, 3432, 3904
RseI	CAYNNNNRTG	2 cut(s)	1407, 3950
SacI	GAGCTC	1 cut(s)	1221
SapI	GCTCTTC	1 cut(s)	1226
SaqAI	TTAA	8 cut(s)	587, 632, 1238, 1439, 1500, 1985, 2580, 3590
SatI	GCNGC	9 cut(s)	162, 1151, 2040, 2855, 2987, 3078, 3081, 3521, 4055
Sau96I	GGNCC	3 cut(s)	602, 1067, 1268
ScaI	AGTACT	1 cut(s)	3433
SchI	GAGTC	7 cut(s)	32, 88, 1669, 2840, 2870, 3550, 4087
SduI	GDGCHC	1 cut(s)	1221
SexAI	ACCWGGT	2 cut(s)	2629, 2959
SfcI	CTRYAG	2 cut(s)	2823, 3078
Sfr274I	CTCGAG	1 cut(s)	3241
SinI	GGWCC	2 cut(s)	1067, 1268
SlaI	CTCGAG	1 cut(s)	3241
SmiMI	CAYNNNNRTG	2 cut(s)	1407, 3950
SmlI	CTYRAG	4 cut(s)	665, 2350, 2912, 3241
SmoI	CTYRAG	4 cut(s)	665, 2350, 2912, 3241
SnaBI	TACGTA	1 cut(s)	350
SpeI	ACTAGT	2 cut(s)	1180, 4243
SseBI	AGGCCT	1 cut(s)	2172
SsiI	CCGC	5 cut(s)	1052, 1390, 2040, 2088, 4055
SspI	AATATT	3 cut(s)	2067, 3157, 3260
SstI	GAGCTC	1 cut(s)	1221
StuI	AGGCCT	1 cut(s)	2172
StyI	CCWWGG	5 cut(s)	964, 2031, 2751, 2946, 3616
TaiI	ACGT	2 cut(s)	185, 352
TaqI	TCGA	8 cut(s)	426, 750, 918, 1224, 2436, 3012, 3242, 3255
TatI	WGTACW	1 cut(s)	3431
TauI	GCSGC	2 cut(s)	2042, 4057
TfiI	GAWTC	7 cut(s)	415, 1169, 2091, 2313, 2429, 3386, 4045
Tru1I	TTAA	8 cut(s)	587, 632, 1238, 1439, 1500, 1985, 2580, 3590
Tru9I	TTAA	8 cut(s)	587, 632, 1238, 1439, 1500, 1985, 2580, 3590
TseFI	GTSAC	2 cut(s)	2606, 4107
TseI	GCWGC	7 cut(s)	161, 1150, 2854, 2986, 3077, 3080, 3520
Tsp45I	GTSAC	2 cut(s)	2606, 4107
TspGWI	ACGGA	2 cut(s)	959, 3534
Van91I	CCANNNNNTGG	3 cut(s)	614, 3443, 3869
VpaK11BI	GGWCC	2 cut(s)	1067, 1268
XapI	RAATTY	7 cut(s)	1600, 1758, 2412, 2466, 3758, 3993, 4059
XbaI	TCTAGA	2 cut(s)	1108, 2462
XceI	RCATGY	1 cut(s)	296
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1747, 2491, 3040
XhoI	CTCGAG	1 cut(s)	3241
XmnI	GAANNNNTTC	3 cut(s)	1584, 3261, 3647
ZrmI	AGTACT	1 cut(s)	3433
Zsp2I	ATGCAT	1 cut(s)	3573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.