Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0008205

Physical Location & Seq

Genomic Coordinates Reverse (-)

6941587 .. 6957358

Gene Structure 15772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG089800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3552 bp

ATGGAGTTTTTTTTTTTTTTTTTTTTTGTTTTGGGTTGGTGGCAGAAGAAAAAAGATTTTTCTTCTAGGATTTTTTTTCTGAAGCTAGGGTTAGAACTCGTGCTGATAACGTGTTGTAGGAGAATAGAATTGTGTGTTATCATTGATAATAGGAGCCCTTTAAATAGGGAGTTACAAGGTACCCAAAAGATCCTTGGACTTGATATATGTGCTGACACTCTAGTTGGAGATGCCATGCTAACAGGTATATCTGGTGGTCAAAAGAAGAGGTTGACAACAGCGGAGATGATCATTGGTCCCACAAAAGCTTTGTTCATGGATGAGATAACAAATGGTCTAGACAGTTCCACTGCATTCCAAATTGTTGCTTGTCTTCAGCAGCTGGTGCATATAACAGATTCTACTTTACTAGTTTCTCTTCTTCAGCCAGCACCGGAGACGTTTGAGCTCTTTGATGACCTTATTTTAATGTCAGAAGGGAAGATTGTTTATCATGGTCCACGGGATCATGTCTTGGAGTTTTTTGAGGATTGTGGGTTCAAGTGTCCTGAGAGGAAAGGGGTTGCTGATTTCATCCAAGAGGTAATCTCTAAGAAAGATCAAGCACACTATTGGTACCGCACGGAACCTCACAATTATGTCTCAGTTGATATGTTCTCGAAAAAATTCAAGGCATCTTCTTTTGGGAAGAAGCTAGATGAGGATCTTTTAGAGCCATTTGATAAGCTTCAAGACAATAACAATGCTCTTTCCGTTAGTGTGTATTCTCTTTCTAAATGGGAACTTTTTAGAGCTTGTTCGTCAAGAGAACTTCTTCTCATGAAGAGGAATTCTTTTATCTATGTATTCAAGACAGTTCAGCTTATCATCATTGCATTTATCACCATGACTGTATTTCTGAGGACTCGAATGGATATTGATGTTCTTCATGCAAACTACTACATGGGTTCCCTATTCTTTGCTCTTACCATACTTCTCGTGGATGGAATTCCTGAGTTGTCTATGACACTTCAAAGACTAGAAGTTTTCTATAAGCAGAGAGACCTGTGTTTTTATCCAGCTTGGGCTTATGCAATTCCGGCAACACTACTGAAAGTACCTGTTTCATTTGTGGAAGCCCTGGTTTGGACTTCTCTTACTTACTATGTCATTGGATACAGTCCTGAGTTCCAAAAGTTCATCCTCCAGTTCTTTCTACTTTTTGCCGTTCATTTAACATCAATATCCATGTTTCGCTTCCTGGCATCATTCTTTCAGACCATGGTTGCCGCAATGACAGCCGGTAGTTTTGCAATGTTGTTTCTGTTGCTATTCAGCGGATTCATTATCAAAAAACCTTCCATGCCTGGTTGGTTAGAGTGGGGATTTTGGGTTTCCCCACTGACATATGGGGAGATAGGCCTCTCTGTGAACGAGTTTCTTTCTCCAAGATGGCAAACAATGCCATCAACGAACATTACTATTGGGCATGAAACCCTTGAAAGCCGTGGACTAAACTTTGATGGATATTTCTACTGGATATCACTTGGTGCCTTATTTGGATTCACAATGATTTTCAACATAGGATACATCTTGTCCTTGAGTTTCTTGAAGTCTCCCGGATCATCTCATGGTATCATTTCACATGAAAAGCTTGCCCAAATTCAAAGAACTGATGATTCCCTCGATGATGCCCAAGTGAAAGAAAAGTCTAGAATTCATCCTTCTAAAACCACTGGCAAGATGGTCTTACCCTTTACTCCATTGACACTGGTTTTCCAAGATGTGCAATACTACGTTATTCCTATGGAAACCAGGGAGCCAGGATTTAATCAGAAGAAACTTCAACTTCTAAGTGACATTACAGGGGCATTTAGACCTGGTGTTCTTACAGCATTGATGGGCGTCAGCGGCGCTGGGAAAACCACTCTTCTTGATGTTCTTGCAGGCAGAAAGACTACTGGCTGCATTGAAGGAGACATAAAGATTGGTGGATATCCCAAGGTTCAAGAAACATTTGCTAGGGTATTGGGTTACTGTGAGCAAACCGATGTTCATTCTCCACAAATCACTGTAGAAGAGTCTTTGATGTTTTCTGCTTGGCTGCGCCTGGCTTCTCAGATTGACTCAAAGACAAAAACTGAGTTTGTCAATGAAGTCCTTGAGACCATTGAGCTTGATGGAATAAAAGATGCCTTTGTTGGAATACCTGGTGTTAGTGGTCTATCAAATGAGCAGCGTAAGCGGCTTACAATTGCTGTCGAGCTTGTTTCAAATCCCTCCATAATCTTCATGGATGAACCTACAACTGGTTTGGATGCAAGAGCTGCTGCAATAGTCATGCGAGCAGTGAAGAATGTAGCTGATACGGGAAGAACAATTGTTTGCACCATCCACCAACCGAATATTGATATATTTGAAGCATTTGATGAGCTAATTCTTTTGAAAACTGGAGGGCGTATGATCTACTCAGGACAGGTGGGTCAGCACTCGAGTAGAGTTATCGAATATTTTCAGAGTATTCCTGGCGTTCAAAAGATCAAAAGTAACTACAATCCAGCTACATGGATGTTAGACATCACTTCTACATCAGCTGAAGCTGAACATGGTGTTGATTTTGCCCAAATATACAGAGAATCTAGTTTATATGGGAATAATATAGAGCTTGCAAGACAGTTGAGTACTCCACCTCCTGGTTCCAGAGATCTGCATTTTGCTACACGCTTTTCACAAAATGGCTGGATGCAGTTCAAATCTTGCCTATGGAAGCAGCACTTGTCTTATTGGAGGAGTCCGTCATATAACTTGATGCGCATCATGCATACGGTTGTATCATCTCTAATTTTCGGGACATTGTATTGGAACCAAGGGAGGAAAATAACCGACCAGCAGAACTTATTCAATATACTTGGTTCTATGTATGCTGGTGTCATCTTCTTGGGCATAAATAACTGCGCAACTGTTCTGCAATATGTTGCCACTGAGAGAACTGTCATGTATCGTGAAAAATTTGTGGGGATGTATTCACCATTGGCCTTTTCGGTTGCACAGGTGGTGGTTGAACTTCCCTATATATTTATCGAGGCAGTCTTATTTATGATCATCACATATCCAATGATTGGGTATTATGCTTCAGCATATAAGGTTTTCTGGTACTTCTATGCCTTATTTTGTTCACTGCTATACTACAATTACATGGGAATGATGCTCGTTTCGTTGACGCCAAACTTCATGGTAGCTGCAATTCTATCTTCAGTGTTCTACACAGTGTATAACCTATTTGCTGGTTTTGTGATTCCGAAGCCGCAAATTCCGAAATGGTGGATTTGGTTGTATTACCTGACTCCCTCATCTTGGTCACTAAATGGTTTGCTCACTTCACAATATGGAGACATAAACAAGGAGATTATCATATTTGGGGAACCCAAAACAGTGTCTGCCTTCTTGAAAGACTACTTTGGGTTTCACCATGATCAGTTGGCTCTGGTGGCACTAGTTCTCATTGCATTTCCCATAGCTTTTGCATCTATTTTCGCCTACTGTATCGGACGGTTGAACTTCCAGAGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0009506 GO:0009719 GO:0009725 GO:0009733 GO:0009914 GO:0009926 GO:0009987 GO:0010033 GO:0010243 GO:0010817 GO:0014070 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022622 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071365 GO:0071366 GO:0071407 GO:0071417 GO:0071495 GO:0071944 GO:0080026 GO:0099402 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1183

Amino Acids

134.53

Weight (kDa)

6.86

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane_7	PF19055	142 - 195	2e-06	ABC-2 type transporter
ABC2_membrane	PF01061	262 - 473	1.9e-46	ABC-2 type transporter
PDR_assoc	PF08370	478 - 540	3.6e-21	Plant PDR ABC transporter associated
ABC_tran	PF00005	611 - 763	5.5e-21	ABC transporter
ABC2_membrane	PF01061	909 - 1122	1.4e-56	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0008205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37280 AT2G37280 AT2G37280 AT2G37280 AT3G53480
fragaria_vesca	FvH4_6g08380 FvH4_6g08380 FvH4_6g08380
malus_domestica	MD04G1187600.v1.1
prunus_persica	Prupe.6G306100_v2.0.a1
pyrus_communis	pycom04g16590
rosa_chinensis	RchiOBHm_Chr3g0458321
rosa_laevigata	RLG00000025169
rosa_multiflora	Rmu_sc0007338.1_g000006
rosa_roxburghii	Rroxscaffold_6G00421170
rosa_rugosa	Rorug03G0025800 Rorug03G0025800 Rorug03G0025800
rosa_samantha	Rh3AG086600 Rh3BG089400 Rh3CG089800 Rh3DG090400
rosa_wichuraiana	Rw3G007350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2460
Acc16I	TGCGCA	2 cut(s)	2792, 2935
Acc65I	GGTACC	2 cut(s)	179, 615
AccB1I	GGYRCC	3 cut(s)	179, 615, 1529
AccB7I	CCANNNNNTGG	2 cut(s)	2672, 3098
AciI	CCGC	7 cut(s)	281, 619, 1269, 1317, 1890, 2224, 3284
AclWI	GGATC	4 cut(s)	184, 513, 711, 1609
AcsI	RAATTY	7 cut(s)	665, 829, 987, 1641, 1695, 2987, 3288
AcuI	CTGAAG	6 cut(s)	101, 359, 407, 2595, 3096, 3216
AcyI	GRCGYC	2 cut(s)	1884, 3200
AdeI	CACNNNGTG	1 cut(s)	1529
AfaI	GTAC	5 cut(s)	181, 617, 1098, 2662, 3134
AfiI	CCNNNNNNNGG	5 cut(s)	1125, 2288, 2672, 3098, 3333
AflIII	ACRYGT	1 cut(s)	110
AhlI	ACTAGT	2 cut(s)	409, 3472
AloI	GAACNNNNNNTCC	2 cut(s)	521, 553
Alw21I	GWGCWC	1 cut(s)	450
Alw26I	GTCTC	7 cut(s)	431, 646, 1035, 1599, 1950, 2138, 3363
AlwI	GGATC	4 cut(s)	184, 513, 711, 1609
AlwNI	CAGNNNCTG	2 cut(s)	382, 3416
Ama87I	CYCGRG	1 cut(s)	2470
AoxI	GGCC	2 cut(s)	1399, 3012
ApeKI	GCWGC	8 cut(s)	379, 1944, 2083, 2215, 2306, 2309, 2749, 3218
ApoI	RAATTY	7 cut(s)	665, 829, 987, 1641, 1695, 2987, 3288
Asp700I	GAANNNNTTC	4 cut(s)	665, 813, 2490, 2876
Asp718I	GGTACC	2 cut(s)	179, 615
AspLEI	GCGC	4 cut(s)	1895, 2088, 2793, 2936
AspS9I	GGNCC	2 cut(s)	296, 497
AsuC2I	CCSGG	1 cut(s)	1599
AsuHPI	GGTGA	3 cut(s)	874, 2997, 3437
AvaI	CYCGRG	1 cut(s)	2470
AvaII	GGWCC	2 cut(s)	296, 497
BaeI	ACNNNNGTAYC	2 cut(s)	2793, 2826
BanI	GGYRCC	3 cut(s)	179, 615, 1529
BanII	GRGCYC	2 cut(s)	158, 450
BauI	CACGAG	2 cut(s)	98, 977
BbsI	GAAGAC	1 cut(s)	365
Bbv12I	GWGCWC	1 cut(s)	450
BbvI	GCAGC	8 cut(s)	391, 1931, 2070, 2227, 2293, 2296, 2761, 3205
BccI	CCATC	8 cut(s)	977, 1425, 1453, 1496, 1717, 1873, 2153, 2378
BceAI	ACGGC	2 cut(s)	1190, 1470
BciVI	GTATCC	2 cut(s)	1148, 1559
BclI	TGATCA	3 cut(s)	288, 3078, 3451
BcnI	CCSGG	1 cut(s)	1599
BcoDI	GTCTC	7 cut(s)	431, 646, 1035, 1599, 1950, 2138, 3363
BcuI	ACTAGT	2 cut(s)	409, 3472
BfmI	CTRYAG	1 cut(s)	2052
BfoI	RGCGCY	1 cut(s)	1896
BfuI	GTATCC	2 cut(s)	1148, 1559
BglII	AGATCT	1 cut(s)	2683
BmcAI	AGTACT	1 cut(s)	2662
Bme18I	GGWCC	2 cut(s)	296, 497
BmeT110I	CYCGRG	1 cut(s)	2470
BmgT120I	GGNCC	2 cut(s)	296, 497
BpiI	GAAGAC	1 cut(s)	365
BplI	GAGNNNNNCTC	2 cut(s)	572, 604
BpmI	CTGGAG	2 cut(s)	1169, 2451
BpuEI	CTTGAG	2 cut(s)	1600, 2162
BpuMI	CCSGG	1 cut(s)	1599
BsaBI	GATNNNNATC	2 cut(s)	702, 2792
BsaHI	GRCGYC	2 cut(s)	1884, 3200
BsaI	GGTCTC	2 cut(s)	1035, 2138
BsaJI	CCNNGG	8 cut(s)	193, 500, 1119, 1260, 1486, 1794, 1980, 2845
BsaWI	WCCGGW	1 cut(s)	433
BsaXI	ACNNNNNCTCC	2 cut(s)	2653, 2683
Bsc4I	CCNNNNNNNGG	5 cut(s)	1125, 2288, 2672, 3098, 3333
Bse118I	RCCGGY	1 cut(s)	1280
Bse1I	ACTGG	7 cut(s)	1186, 1520, 1720, 1755, 1945, 2293, 2434
Bse3DI	GCAATG	4 cut(s)	870, 1278, 1299, 3480
Bse8I	GATNNNNATC	2 cut(s)	702, 2792
BseDI	CCNNGG	8 cut(s)	193, 500, 1119, 1260, 1486, 1794, 1980, 2845
BseJI	GATNNNNATC	2 cut(s)	702, 2792
BseLI	CCNNNNNNNGG	5 cut(s)	1125, 2288, 2672, 3098, 3333
BseMI	GCAATG	4 cut(s)	870, 1278, 1299, 3480
BseMII	CTCAG	9 cut(s)	540, 657, 890, 984, 1155, 2111, 2112, 2463, 2952
BseNI	ACTGG	7 cut(s)	1186, 1520, 1720, 1755, 1945, 2293, 2434
BseRI	GAGGAG	1 cut(s)	2782
BseXI	GCAGC	8 cut(s)	391, 1931, 2070, 2227, 2293, 2296, 2761, 3205
BseYI	CCCAGC	1 cut(s)	1895
BshFI	GGCC	2 cut(s)	1401, 3014
BshNI	GGYRCC	3 cut(s)	179, 615, 1529
BsiHKAI	GWGCWC	1 cut(s)	450
BsiHKCI	CYCGRG	1 cut(s)	2470
BsiSI	CCGG	4 cut(s)	434, 1079, 1281, 1599
BslFI	GGGAC	2 cut(s)	282, 2842
BslI	CCNNNNNNNGG	5 cut(s)	1125, 2288, 2672, 3098, 3333
BsmAI	GTCTC	7 cut(s)	431, 646, 1035, 1599, 1950, 2138, 3363
BsmBI	CGTCTC	1 cut(s)	431
BsmFI	GGGAC	2 cut(s)	282, 2842
BsmI	GAATGC	1 cut(s)	353
BsnI	GGCC	2 cut(s)	1401, 3014
Bso31I	GGTCTC	2 cut(s)	1035, 2138
BsoBI	CYCGRG	1 cut(s)	2470
Bsp1286I	GDGCHC	2 cut(s)	158, 450
Bsp19I	CCATGG	1 cut(s)	1260
BspACI	CCGC	7 cut(s)	281, 619, 1269, 1317, 1890, 2224, 3284
BspANI	GGCC	2 cut(s)	1401, 3014
BspCNI	CTCAG	9 cut(s)	541, 656, 891, 985, 1156, 2110, 2113, 2462, 2953
BspHI	TCATGA	1 cut(s)	819
BspPI	GGATC	4 cut(s)	184, 513, 711, 1609
BspT107I	GGYRCC	3 cut(s)	179, 615, 1529
BspTNI	GGTCTC	2 cut(s)	1035, 2138
BsrDI	GCAATG	4 cut(s)	870, 1278, 1299, 3480
BsrFI	RCCGGY	1 cut(s)	1280
BsrI	ACTGG	7 cut(s)	1186, 1520, 1720, 1755, 1945, 2293, 2434
BssAI	RCCGGY	1 cut(s)	1280
BssECI	CCNNGG	8 cut(s)	193, 500, 1119, 1260, 1486, 1794, 1980, 2845
BssNI	GRCGYC	2 cut(s)	1884, 3200
BssSI	CACGAG	2 cut(s)	98, 977
BssT1I	CCWWGG	4 cut(s)	193, 1260, 1980, 2845
Bst2BI	CACGAG	2 cut(s)	98, 977
Bst6I	CTCTTC	5 cut(s)	260, 423, 818, 1914, 2052
BstACI	GRCGYC	2 cut(s)	1884, 3200
BstAPI	GCANNNNNTGC	3 cut(s)	385, 1441, 2306
BstC8I	GCNNGC	5 cut(s)	429, 1635, 1927, 2325, 2646
BstDSI	CCRYGG	3 cut(s)	500, 1260, 1486
BstH2I	RGCGCY	1 cut(s)	1896
BstHHI	GCGC	4 cut(s)	1895, 2088, 2793, 2936
BstMAI	GTCTC	7 cut(s)	431, 646, 1035, 1599, 1950, 2138, 3363
BstSFI	CTRYAG	1 cut(s)	2052
BstV1I	GCAGC	8 cut(s)	391, 1931, 2070, 2227, 2293, 2296, 2761, 3205
BstV2I	GAAGAC	1 cut(s)	365
BstX2I	RGATCY	3 cut(s)	189, 703, 2683
BstXI	CCANNNNNNTGG	1 cut(s)	2544
BstYI	RGATCY	3 cut(s)	189, 703, 2683
BsuI	GTATCC	2 cut(s)	1148, 1559
BsuRI	GGCC	2 cut(s)	1401, 3014
BtgI	CCRYGG	3 cut(s)	500, 1260, 1486
BtsI	GCAGTG	3 cut(s)	348, 2334, 3155
Cac8I	GCNNGC	5 cut(s)	429, 1635, 1927, 2325, 2646
CaiI	CAGNNNCTG	2 cut(s)	382, 3416
CciI	TCATGA	1 cut(s)	819
CfoI	GCGC	4 cut(s)	1895, 2088, 2793, 2936
Cfr10I	RCCGGY	1 cut(s)	1280
Cfr13I	GGNCC	2 cut(s)	296, 497
CseI	GACGC	2 cut(s)	1873, 3208
CsiI	ACCWGGT	2 cut(s)	1858, 2188
Csp6I	GTAC	5 cut(s)	180, 616, 1097, 2661, 3133
CspCI	CAANNNNNGTGG	2 cut(s)	1894, 1929
CviQI	GTAC	5 cut(s)	180, 616, 1097, 2661, 3133
DraI	TTTAAA	1 cut(s)	162
DraIII	CACNNNGTG	1 cut(s)	1529
DrdI	GACNNNNNNGTC	1 cut(s)	2460
DseDI	GACNNNNNNGTC	1 cut(s)	2460
Eam1104I	CTCTTC	5 cut(s)	260, 423, 818, 1914, 2052
EarI	CTCTTC	5 cut(s)	260, 423, 818, 1914, 2052
Ecl136II	GAGCTC	1 cut(s)	448
Eco130I	CCWWGG	4 cut(s)	193, 1260, 1980, 2845
Eco147I	AGGCCT	1 cut(s)	1401
Eco24I	GRGCYC	2 cut(s)	158, 450
Eco31I	GGTCTC	2 cut(s)	1035, 2138
Eco32I	GATATC	2 cut(s)	1521, 1976
Eco47I	GGWCC	2 cut(s)	296, 497
Eco53kI	GAGCTC	1 cut(s)	448
Eco57I	CTGAAG	6 cut(s)	101, 359, 407, 2595, 3096, 3216
Eco88I	CYCGRG	1 cut(s)	2470
EcoICRI	GAGCTC	1 cut(s)	448
EcoRI	GAATTC	3 cut(s)	829, 987, 1695
EcoRV	GATATC	2 cut(s)	1521, 1976
EcoT14I	CCWWGG	4 cut(s)	193, 1260, 1980, 2845
EcoT22I	ATGCAT	1 cut(s)	2802
EcoT38I	GRGCYC	2 cut(s)	158, 450
ErhI	CCWWGG	4 cut(s)	193, 1260, 1980, 2845
Esp3I	CGTCTC	1 cut(s)	431
FalI	AAGNNNNNCTT	4 cut(s)	1712, 1744, 2738, 2770
FaqI	GGGAC	2 cut(s)	282, 2842
FauNDI	CATATG	1 cut(s)	1387
FbaI	TGATCA	3 cut(s)	288, 3078, 3451
FriOI	GRGCYC	2 cut(s)	158, 450
FspAI	RTGCGCAY	1 cut(s)	2792
FspI	TGCGCA	2 cut(s)	2792, 2935
GlaI	GCGC	4 cut(s)	1894, 2087, 2792, 2935
GsaI	CCCAGC	1 cut(s)	1899
GsuI	CTGGAG	2 cut(s)	1169, 2451
HaeII	RGCGCY	1 cut(s)	1896
HaeIII	GGCC	2 cut(s)	1401, 3014
HapII	CCGG	4 cut(s)	434, 1079, 1281, 1599
HgaI	GACGC	2 cut(s)	1873, 3208
HhaI	GCGC	4 cut(s)	1895, 2088, 2793, 2936
Hin1I	GRCGYC	2 cut(s)	1884, 3200
Hin6I	GCGC	4 cut(s)	1893, 2086, 2791, 2934
HinP1I	GCGC	4 cut(s)	1893, 2086, 2791, 2934
HincII	GTYRAC	2 cut(s)	273, 3198
HindII	GTYRAC	2 cut(s)	273, 3198
HindIII	AAGCTT	3 cut(s)	306, 725, 1631
HpaII	CCGG	4 cut(s)	434, 1079, 1281, 1599
HphI	GGTGA	3 cut(s)	874, 2997, 3437
Hpy166II	GTNNAC	6 cut(s)	273, 500, 1411, 1490, 3155, 3198
Hpy8I	GTNNAC	6 cut(s)	273, 500, 1411, 1490, 3155, 3198
HpyAV	CCTTC	5 cut(s)	470, 1347, 1713, 1946, 3430
HpyCH4IV	ACGT	3 cut(s)	110, 440, 1776
HpySE526I	ACGT	3 cut(s)	110, 440, 1776
Hsp92I	GRCGYC	2 cut(s)	1884, 3200
HspAI	GCGC	4 cut(s)	1893, 2086, 2791, 2934
KpnI	GGTACC	2 cut(s)	183, 619
Ksp22I	TGATCA	3 cut(s)	288, 3078, 3451
LmnI	GCTCC	2 cut(s)	153, 1798
Lsp1109I	GCAGC	8 cut(s)	391, 1931, 2070, 2227, 2293, 2296, 2761, 3205
MabI	ACCWGGT	2 cut(s)	1858, 2188
MaeII	ACGT	3 cut(s)	110, 440, 1776
MaeIII	GTNAC	5 cut(s)	171, 1835, 2012, 2525, 3336
MfeI	CAATTG	2 cut(s)	2232, 2358
MflI	RGATCY	3 cut(s)	189, 703, 2683
MhlI	GDGCHC	2 cut(s)	158, 450
MlyI	GAGTC	5 cut(s)	898, 2069, 2099, 2779, 3316
MmeI	TCCRAC	2 cut(s)	205, 2161
Mph1103I	ATGCAT	1 cut(s)	2802
MroXI	GAANNNNTTC	4 cut(s)	665, 813, 2490, 2876
MseI	TTAA	4 cut(s)	161, 467, 1214, 1809
MslI	CAYNNNNRTG	2 cut(s)	636, 3179
MspA1I	CMGCKG	5 cut(s)	281, 382, 1317, 1890, 2573
MspI	CCGG	4 cut(s)	434, 1079, 1281, 1599
MunI	CAATTG	2 cut(s)	2232, 2358
Mva1269I	GAATGC	1 cut(s)	353
NciI	CCSGG	1 cut(s)	1599
NcoI	CCATGG	1 cut(s)	1260
NdeI	CATATG	1 cut(s)	1387
NmuCI	GTSAC	2 cut(s)	1835, 3336
NsbI	TGCGCA	2 cut(s)	2792, 2935
NsiI	ATGCAT	1 cut(s)	2802
PaeR7I	CTCGAG	1 cut(s)	2470
PagI	TCATGA	1 cut(s)	819
PceI	AGGCCT	1 cut(s)	1401
PctI	GAATGC	1 cut(s)	353
PdmI	GAANNNNTTC	4 cut(s)	665, 813, 2490, 2876
PfeI	GAWTC	6 cut(s)	398, 1320, 1542, 1658, 2615, 3274
PflMI	CCANNNNNTGG	2 cut(s)	2672, 3098
PfoI	TCCNGGA	1 cut(s)	1597
PleI	GAGTC	5 cut(s)	898, 2068, 2099, 2778, 3316
PpsI	GAGTC	5 cut(s)	898, 2068, 2099, 2778, 3316
Psp124BI	GAGCTC	1 cut(s)	450
PspFI	CCCAGC	1 cut(s)	1895
PspPI	GGNCC	2 cut(s)	296, 497
PspXI	VCTCGAGB	1 cut(s)	2470
PstNI	CAGNNNCTG	2 cut(s)	382, 3416
PsuI	RGATCY	3 cut(s)	189, 703, 2683
PvuII	CAGCTG	2 cut(s)	382, 2573
RsaI	GTAC	5 cut(s)	181, 617, 1098, 2662, 3134
RsaNI	GTAC	5 cut(s)	180, 616, 1097, 2661, 3133
RseI	CAYNNNNRTG	2 cut(s)	636, 3179
SacI	GAGCTC	1 cut(s)	450
SaqAI	TTAA	4 cut(s)	161, 467, 1214, 1809
Sau96I	GGNCC	2 cut(s)	296, 497
ScaI	AGTACT	1 cut(s)	2662
SchI	GAGTC	5 cut(s)	898, 2069, 2099, 2779, 3316
SduI	GDGCHC	2 cut(s)	158, 450
SexAI	ACCWGGT	2 cut(s)	1858, 2188
SfcI	CTRYAG	1 cut(s)	2052
Sfr274I	CTCGAG	1 cut(s)	2470
SinI	GGWCC	2 cut(s)	296, 497
SlaI	CTCGAG	1 cut(s)	2470
SmiMI	CAYNNNNRTG	2 cut(s)	636, 3179
SmlI	CTYRAG	3 cut(s)	1579, 2141, 2470
SmoI	CTYRAG	3 cut(s)	1579, 2141, 2470
SpeI	ACTAGT	2 cut(s)	409, 3472
SseBI	AGGCCT	1 cut(s)	1401
SsiI	CCGC	7 cut(s)	281, 619, 1269, 1317, 1890, 2224, 3284
SspI	AATATT	2 cut(s)	2386, 2489
SstI	GAGCTC	1 cut(s)	450
StuI	AGGCCT	1 cut(s)	1401
StyI	CCWWGG	4 cut(s)	193, 1260, 1980, 2845
TaiI	ACGT	3 cut(s)	113, 443, 1779
TaqI	TCGA	7 cut(s)	659, 907, 1665, 2241, 2471, 2484, 3060
TatI	WGTACW	1 cut(s)	2660
TauI	GCSGC	4 cut(s)	1271, 1893, 2227, 3286
TfiI	GAWTC	6 cut(s)	398, 1320, 1542, 1658, 2615, 3274
Tru1I	TTAA	4 cut(s)	161, 467, 1214, 1809
Tru9I	TTAA	4 cut(s)	161, 467, 1214, 1809
TseFI	GTSAC	2 cut(s)	1835, 3336
TseI	GCWGC	8 cut(s)	379, 1944, 2083, 2215, 2306, 2309, 2749, 3218
Tsp45I	GTSAC	2 cut(s)	1835, 3336
TspGWI	ACGGA	3 cut(s)	638, 742, 2763
Van91I	CCANNNNNTGG	2 cut(s)	2672, 3098
VpaK11BI	GGWCC	2 cut(s)	296, 497
XapI	RAATTY	7 cut(s)	665, 829, 987, 1641, 1695, 2987, 3288
XbaI	TCTAGA	2 cut(s)	337, 1691
XcmI	CCANNNNNNNNNTGG	4 cut(s)	191, 976, 1720, 2269
XhoI	CTCGAG	1 cut(s)	2470
XmnI	GAANNNNTTC	4 cut(s)	665, 813, 2490, 2876
ZrmI	AGTACT	1 cut(s)	2662
Zsp2I	ATGCAT	1 cut(s)	2802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.