Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0008205

Physical Location & Seq

Genomic Coordinates Forward (+)

42399865 .. 42407076

Gene Structure 7212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00421170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4203 bp

ATGGCTCAGATGGTAGGCAGAGATGACATAGAGTCGCTAAGAATTGATTTGGAAGAGATAGGAAGAAGCTTTAGGTCATCGATTCAGAGTCGTAACTCCAGTTTCCGAGCCAATTCAGCATTGAGTTCTGCCAAAGATGACACTGATGCTCAATATGCTGTGCAGTGGGCAGCCATTGAGAGACTGCCAACGTTTGAACGGCTCAAATCATCTTTGTTTGACAAGGGTGATGATGGAAATGAACTTGATGGTGAAGGAAAGAGGGTGGTTGATGTTACCAAGCTTGGAGCTATGGAAAAGCATGTCTTCATAGATAAGCTCATCAAGCACATTGAGAATGACAACCTTCGTCTCTTACGTAAAATCAGAAAAAGGATAGACAAGGTTGGAGTAAAGTTGCCCACTGTGGAGGTGAGGTATAAGAATCTCAGTGTCGAAGCAGTGTGTGAGGTAGTTCATGGAAAGCCCCTCCCAACTCTTTGGAACTCTGTCAGAAGCATGCTTTCTCTCTTTGCTAAGTTTCTAGGTTCTAAGACACAAGAGGCCAAGATAAGCATTATCAAAGACTTTTGTGGTTCAATAAAGCCTGGAAGGTTAACTTTACTGCTTGGCCCCCCAGGATGTGGGAAGACCTCCTTTTTAAAGGCTCTATCAGGAAATCTGGAAAAATCGCTCAAGTTCTCTGGTGAAGTTACTTACAATGGACAGAAGCTAGCAGAGTTTGTCCCCCAAAAAACATCAGCTTATATAAGCCAATTCGACCTGCATATTCCTCAGATGACTGTAAGGGAAATACTTGATTTTTCAGCTCGCTGTCAGGGTATTGGAAGCCGAGCCGATATTATGCTGGAAGTCAGTAAAAGGGAGAAGGAGGCAGGGATTATTCCACATCCAGATATAGATACTTACATGAAGATCCTTGGACTTGATATATGTGCTGACACTCTAGTTGGAGATGCCATGCTAAGAGGTATATCTGGTGGTCAAAAGAAGAGGTTGACAACAGCGGAGATGATCATTGGTCCCACAAAAGCTTTGTTCATGGATGAGATTACAAATGGTCTAGACAGTTCCACTGCATTCCAAATTGTTGCTTGTCTTCAGCAGCTGGTGCATATAACAGATTCTACTTTACTAGTTTCTCTTCTTCAGCCAGCACCGGAGACGTTTGAGCTCTTTGATGACCTTATTTTAATGGCAGAAGGGAAGATTGTTTATCATGGTCCACGGGATCATGTCTTGGAGTTTTTTGAGGATTGCGGGTTCAAGTGTCCTGAGAGGAAAGGGGTAATCTCTAAGAAAGATCAAGCACACTATTGGTACCGCACGGAACCTCACAATTATGTATCAGTTGATATGTTCTCGAAAAATTTCAAGGCATCTTCTTTTGGGAAGAAGCTAGATGAGGATCTTTTAGAGCCATTTGATAAGCTTCAAGACAATAACAATGCTCTTTCCTTTAGTGTGTATTCTCTTTCTAAATGGGAACTTTTTAGAGCTTGTTCGTCAAGAGAACTTCTTCTCATGAAGAGGAATTCTTTTATCTATGTATTCAAGACAGTTCAGCTTATCATCATTGCATTCATCACCATGACTGTATTTCTGAGGACTCGTATGGATATTGATGTTCTTCATGCAAACTACTACATGGGTTCCCTATTCTTTGCTCTAACCATACTTCTCGTGGATGGAATTCCTGAGTTGTCTATGACACTTCAAAGACTAGAAGTTTTCTATAAGCAGAGAGACCTGTGTTTTTACCCAGCTTGGGCTTATGCAATTCCGGCAACACTGCTGAAAGTACCTGTTTCATTTGTGGAAGCCCTGGTTTGGACTTCTCTTACTTACTATGTCATTGGATACAGTCCTGAGTTCCAAAAGTTCATCCTCCAGTTCTTTCTACTTTTTGCCGTTCATTTAACATCAATATCCATGTTTCGCTTCCTGGCATCATTCTTTCAGACCATGGTTGCCGCAATGACAGCCGCTTCCATGCCTGGTTGGTTAGAGTGGGGATTTTGGGTTTCCCCACTGACATATGGGGAGATAGGCCTCTCTGTGAACGAGTTTCTTTCTCCAAGATGGCAAACAATGCCATCAACAAACATCACTATCGGGCATGAAACCCTTGAAAGCCGTGGACTAAACTTTGATGGATATTTCTACTGGATATCACTTGGTGCCTTATTTGGATTCACAATGATTTTCAACATAGGATACATCCTGTCCTTGAGTTTCTTGAAGTCTCCCGGATCATCTCATGGTATCATTTCACATGAAAAGCTTGCCCAAATTCAAAGAACTGATGATTCCCTCGATGATGCCCAAGTGAAAGAAAAGTCTAGAATCCATCCTTCTAAAACCACTGGCAAGATGGTCTTACCCTTTACTCCATTGACACTGGTTTTCCAAGATGTGCAATACTCTGTTATTCCTATGGAAACCAGGGAGCCAGGATTTAATCAGAAGAAACTTCAACTTCTAAGTGACATTACAGGGGCATTTAGACCTGGTGTTCTTACAGCATTGATGGGTGTCAGCGGCGCTGGGAAAACTACTCTTCTTGATGTACTTGCAGGCAGAAAGACTACTGGCTGCATTGAAGGAGACATAAAGATTGGTGGATATCCCAAGGTTCAAGAAACATTTGCTAGGGTATTGGGTTACTGTGAGCAAACCGATGTTCATTCTCCACAAATCACTGTAGAAGAGTCTTTGAAGTTTTCTGCTTGGCTGCGCCTGGCTTCTCAGATTGACTCAAAGACAAAAACTGAGTTTGTCAATGAAGTCCTTGAGACCATTGAGCTTGATGGAATAAAAGATGCCTTGGTTGGAATACCTGGTGTTAGTGGTCTATCAAATGAGCAGCGTAAGCGGCTTACAATTGCTGTCGAGCTTGTTTCAAATCCCTCCATAATCTTCATGGATGAACCTACAACTGGTTTGGATGCAAGAGCTGCTGCAATAGTCATGCGAGCAGTGAAGAATGTAGCTGATACGGGAAGAACAATTGTTTGCACCATCCACCAACCGAATATTGATATATTTGAAGCATTTGATGAGCTAATTCTTTTGAAAACTGGAGGGCGTATGATCTACTCAGGACATGTGGGTCAGCACTCAAGTAGAGTTATCGAATTTTTTCAGAGTATTCCTGGCGTTCAAAAGATCAAAAGTAACTACAATCCAGCTACATGGATGTTAGACATCACTTCTACATCAGCTGAAGCTGAACATGGTGTTGATTTTGCCCAAATATACAGAGAATCTAGTTTATATGGGAATAATATAGAGCTTGCAAGACAGTTGAGTACTCCACCTCCTGGTTCCAGAGATCTGCATTTTGCTACACGCTTTTCACAAAATGGCTGGATGCAGTTCAAATCTTGCCTATGGAAGCAGCACTTGTCTTATTGGAGGAGTCCGTCATATAACTTGATGCGCATCATGCATACGGTTGTAACATCTCTAATTTTCGGGTCATTGTATTGGAACCAAGGGAGGAAAATAACCGACCAGCAGAACTTATTCAATATACTTGGTTCTATGTATGCCGGTGTCATCTTCTTGGGCATAAATAACTGCGCAACTGTTCTGCAATATGTTGCCACAGAGAGAACTGTAATGTATCGCGAAAAATTTGTGGGAATGTATTCACCATTGGCCTTTTCGGTTGCACAGGTGGTGGTTGAACTTCCCTATATATTTATCCAGGCGGTCTTATTTATGATCATCACATATCCAATGATTGGGTATTATGCTTCAGCATATAAGGTTTTCTGGTACTTCTATGCCTTATTTTGTTCACTGCTATACTACAATTACATGGGAATGATGCTCGTTTCGTTGACACCAAACTTCATGGTAGCTGCAATTCTATCTTCAGTGTTCTACACAGTGTATAACTTGTTTGCTGGTTTTGTGATTCCTAAGCCGCAAATTCCGAAATGGTGGATTTGGTTGTATTACCTGACTCCCTCATCTTGGTCACTAAATGGTTTGCTCACTTCACAATATGGAGACATAAACAAGGAGATTATCATATTTGGGGAACCCAAAACAGTGTCTGCCTTCTTGAAAGACTACTTTGGGTTTCACCATGACCAGTTGGCTCTGGTGGCACTAGTTCTTATTGCATTTCCCATAGCTTTTGCATCTATTTTCGCCTACTGTATCGGACGGTTGAACTTCCAGAGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0009506 GO:0009719 GO:0009725 GO:0009733 GO:0009914 GO:0009926 GO:0009987 GO:0010033 GO:0010243 GO:0010817 GO:0014070 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022622 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071365 GO:0071366 GO:0071407 GO:0071417 GO:0071495 GO:0071944 GO:0080026 GO:0099402 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1400

Amino Acids

158.06

Weight (kDa)

8.07

Isoelectric Point (pI)

36.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_trans_N	PF14510	113 - 162	3.6e-06	ABC-transporter N-terminal
ABC_tran	PF00005	191 - 353	7.8e-19	ABC transporter
ABC2_membrane_7	PF19055	384 - 427	5.3e-06	ABC-2 type transporter
ABC2_membrane	PF01061	497 - 664	1.4e-29	ABC-2 type transporter
PDR_assoc	PF08370	695 - 757	4.4e-21	Plant PDR ABC transporter associated
ABC_tran	PF00005	828 - 980	6.9e-21	ABC transporter
ABC2_membrane	PF01061	1126 - 1339	6.4e-57	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37280 AT2G37280 AT2G37280 AT2G37280 AT3G53480
fragaria_vesca	FvH4_6g08380 FvH4_6g08380 FvH4_6g08380
malus_domestica	MD04G1187600.v1.1
prunus_persica	Prupe.6G306100_v2.0.a1
pyrus_communis	pycom04g16590
rosa_chinensis	RchiOBHm_Chr3g0458321
rosa_laevigata	RLG00000025169
rosa_multiflora	Rmu_sc0007338.1_g000006
rosa_roxburghii	Rroxscaffold_6G00421170
rosa_rugosa	Rorug03G0025800 Rorug03G0025800 Rorug03G0025800
rosa_samantha	Rh3AG086600 Rh3BG089400 Rh3CG089800 Rh3DG090400
rosa_wichuraiana	Rw3G007350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	3111
Acc16I	TGCGCA	2 cut(s)	3443, 3586
Acc36I	ACCTGC	1 cut(s)	771
Acc65I	GGTACC	1 cut(s)	1320
AccB1I	GGYRCC	2 cut(s)	1320, 2180
AccB7I	CCANNNNNTGG	3 cut(s)	623, 3323, 3749
AccII	CGCG	1 cut(s)	3633
AciI	CCGC	9 cut(s)	1007, 1260, 1324, 1974, 1986, 2541, 2875, 3716, 3935
AclI	AACGTT	1 cut(s)	191
AclWI	GGATC	4 cut(s)	910, 1239, 1416, 2260
AcsI	RAATTY	7 cut(s)	1369, 1534, 1692, 2292, 3137, 3638, 3939
AcuI	CTGAAG	5 cut(s)	1085, 1133, 3246, 3747, 3867
AdeI	CACNNNGTG	1 cut(s)	2180
AfaI	GTAC	5 cut(s)	1322, 1803, 2571, 3313, 3785
AfiI	CCNNNNNNNGG	7 cut(s)	623, 1768, 1830, 2939, 3323, 3749, 3984
AflIII	ACRYGT	1 cut(s)	3106
AhdI	GACNNNNNGTC	1 cut(s)	31
AhlI	ACTAGT	2 cut(s)	1135, 4123
AloI	GAACNNNNNNTCC	2 cut(s)	1247, 1279
Alw21I	GWGCWC	1 cut(s)	1176
Alw26I	GTCTC	8 cut(s)	175, 356, 1157, 1740, 2250, 2601, 2789, 4014
AlwI	GGATC	4 cut(s)	910, 1239, 1416, 2260
AlwNI	CAGNNNCTG	2 cut(s)	1108, 4067
AoxI	GGCC	4 cut(s)	543, 610, 2050, 3663
ApeKI	GCWGC	9 cut(s)	170, 1105, 2595, 2734, 2866, 2957, 2960, 3400, 3869
ApoI	RAATTY	7 cut(s)	1369, 1534, 1692, 2292, 3137, 3638, 3939
Asp700I	GAANNNNTTC	5 cut(s)	1370, 1518, 3141, 3527, 3652
Asp718I	GGTACC	1 cut(s)	1320
AspLEI	GCGC	4 cut(s)	2546, 2739, 3444, 3587
AspS9I	GGNCC	3 cut(s)	611, 1022, 1223
AsuC2I	CCSGG	1 cut(s)	2250
AsuHPI	GGTGA	7 cut(s)	239, 263, 424, 698, 1579, 3648, 4088
AsuNHI	GCTAGC	1 cut(s)	712
AvaII	GGWCC	2 cut(s)	1022, 1223
BanI	GGYRCC	2 cut(s)	1320, 2180
BanII	GRGCYC	1 cut(s)	1176
BauI	CACGAG	1 cut(s)	1682
BbsI	GAAGAC	3 cut(s)	298, 635, 1091
Bbv12I	GWGCWC	1 cut(s)	1176
BbvI	GCAGC	9 cut(s)	182, 1117, 2582, 2721, 2878, 2944, 2947, 3412, 3856
BceAI	ACGGC	3 cut(s)	215, 1895, 2121
BciVI	GTATCC	2 cut(s)	1853, 2210
BclI	TGATCA	2 cut(s)	1014, 3729
BcnI	CCSGG	1 cut(s)	2250
BcoDI	GTCTC	8 cut(s)	175, 356, 1157, 1740, 2250, 2601, 2789, 4014
BcuI	ACTAGT	2 cut(s)	1135, 4123
BfmI	CTRYAG	1 cut(s)	2703
BfoI	RGCGCY	1 cut(s)	2547
BfuAI	ACCTGC	1 cut(s)	771
BfuI	GTATCC	2 cut(s)	1853, 2210
BglII	AGATCT	1 cut(s)	3334
BmcAI	AGTACT	1 cut(s)	3313
Bme18I	GGWCC	2 cut(s)	1022, 1223
BmeRI	GACNNNNNGTC	1 cut(s)	31
BmgT120I	GGNCC	3 cut(s)	611, 1022, 1223
BmtI	GCTAGC	1 cut(s)	716
BpiI	GAAGAC	3 cut(s)	298, 635, 1091
BpmI	CTGGAG	3 cut(s)	82, 1874, 3102
Bpu10I	CCTNAGC	1 cut(s)	3930
BpuEI	CTTGAG	4 cut(s)	659, 2251, 2813, 3106
BpuMI	CCSGG	1 cut(s)	2250
Bsa29I	ATCGAT	1 cut(s)	80
BsaAI	YACGTR	1 cut(s)	359
BsaBI	GATNNNNATC	2 cut(s)	1407, 3443
BsaI	GGTCTC	2 cut(s)	1740, 2789
BsaWI	WCCGGW	1 cut(s)	1159
BsaXI	ACNNNNNCTCC	4 cut(s)	401, 431, 3304, 3334
Bsc4I	CCNNNNNNNGG	7 cut(s)	623, 1768, 1830, 2939, 3323, 3749, 3984
Bse118I	RCCGGY	1 cut(s)	3554
Bse1I	ACTGG	9 cut(s)	99, 1891, 2171, 2371, 2406, 2596, 2944, 3085, 4105
Bse3DI	GCAATG	2 cut(s)	1575, 1983
Bse8I	GATNNNNATC	2 cut(s)	1407, 3443
BseCI	ATCGAT	1 cut(s)	80
BseJI	GATNNNNATC	2 cut(s)	1407, 3443
BseLI	CCNNNNNNNGG	7 cut(s)	623, 1768, 1830, 2939, 3323, 3749, 3984
BseMI	GCAATG	2 cut(s)	1575, 1983
BseNI	ACTGG	9 cut(s)	99, 1891, 2171, 2371, 2406, 2596, 2944, 3085, 4105
BseRI	GAGGAG	1 cut(s)	3433
BseXI	GCAGC	9 cut(s)	182, 1117, 2582, 2721, 2878, 2944, 2947, 3412, 3856
BseYI	CCCAGC	2 cut(s)	1762, 2546
BsgI	GTGCAG	1 cut(s)	182
Bsh1236I	CGCG	1 cut(s)	3633
BshFI	GGCC	4 cut(s)	545, 612, 2052, 3665
BshNI	GGYRCC	2 cut(s)	1320, 2180
BshVI	ATCGAT	1 cut(s)	80
BsiHKAI	GWGCWC	1 cut(s)	1176
BsiSI	CCGG	4 cut(s)	1160, 1784, 2250, 3555
BslFI	GGGAC	2 cut(s)	710, 1008
BslI	CCNNNNNNNGG	7 cut(s)	623, 1768, 1830, 2939, 3323, 3749, 3984
BsmAI	GTCTC	8 cut(s)	175, 356, 1157, 1740, 2250, 2601, 2789, 4014
BsmBI	CGTCTC	2 cut(s)	356, 1157
BsmFI	GGGAC	2 cut(s)	710, 1008
BsmI	GAATGC	2 cut(s)	1079, 1580
BsnI	GGCC	4 cut(s)	545, 612, 2052, 3665
Bso31I	GGTCTC	2 cut(s)	1740, 2789
Bsp1286I	GDGCHC	1 cut(s)	1176
Bsp19I	CCATGG	1 cut(s)	1965
Bsp68I	TCGCGA	1 cut(s)	3633
BspACI	CCGC	9 cut(s)	1007, 1260, 1324, 1974, 1986, 2541, 2875, 3716, 3935
BspANI	GGCC	4 cut(s)	545, 612, 2052, 3665
BspDI	ATCGAT	1 cut(s)	80
BspFNI	CGCG	1 cut(s)	3633
BspHI	TCATGA	1 cut(s)	1524
BspMI	ACCTGC	1 cut(s)	771
BspOI	GCTAGC	1 cut(s)	716
BspPI	GGATC	4 cut(s)	910, 1239, 1416, 2260
BspT107I	GGYRCC	2 cut(s)	1320, 2180
BspTNI	GGTCTC	2 cut(s)	1740, 2789
BsrDI	GCAATG	2 cut(s)	1575, 1983
BsrFI	RCCGGY	1 cut(s)	3554
BsrI	ACTGG	9 cut(s)	99, 1891, 2171, 2371, 2406, 2596, 2944, 3085, 4105
BssAI	RCCGGY	1 cut(s)	3554
BssSI	CACGAG	1 cut(s)	1682
BssT1I	CCWWGG	5 cut(s)	919, 1965, 2631, 2826, 3496
Bst2BI	CACGAG	1 cut(s)	1682
Bst6I	CTCTTC	6 cut(s)	48, 986, 1149, 1523, 2565, 2703
BstAPI	GCANNNNNTGC	3 cut(s)	1111, 2092, 2957
BstBAI	YACGTR	1 cut(s)	359
BstC8I	GCNNGC	8 cut(s)	500, 714, 811, 1155, 2286, 2578, 2976, 3297
BstDSI	CCRYGG	3 cut(s)	1226, 1965, 2137
BstFNI	CGCG	1 cut(s)	3633
BstH2I	RGCGCY	1 cut(s)	2547
BstHHI	GCGC	4 cut(s)	2546, 2739, 3444, 3587
BstMAI	GTCTC	8 cut(s)	175, 356, 1157, 1740, 2250, 2601, 2789, 4014
BstNSI	RCATGY	3 cut(s)	305, 502, 3110
BstSFI	CTRYAG	1 cut(s)	2703
BstSNI	TACGTA	1 cut(s)	359
BstUI	CGCG	1 cut(s)	3633
BstV1I	GCAGC	9 cut(s)	182, 1117, 2582, 2721, 2878, 2944, 2947, 3412, 3856
BstV2I	GAAGAC	3 cut(s)	298, 635, 1091
BstX2I	RGATCY	3 cut(s)	915, 1408, 3334
BstXI	CCANNNNNNTGG	2 cut(s)	480, 3195
BstYI	RGATCY	3 cut(s)	915, 1408, 3334
Bsu15I	ATCGAT	1 cut(s)	80
BsuI	GTATCC	2 cut(s)	1853, 2210
BsuRI	GGCC	4 cut(s)	545, 612, 2052, 3665
BsuTUI	ATCGAT	1 cut(s)	80
BtgI	CCRYGG	3 cut(s)	1226, 1965, 2137
BtsI	GCAGTG	6 cut(s)	170, 447, 1074, 1790, 2985, 3806
BtuMI	TCGCGA	1 cut(s)	3633
BveI	ACCTGC	1 cut(s)	771
Cac8I	GCNNGC	8 cut(s)	500, 714, 811, 1155, 2286, 2578, 2976, 3297
CaiI	CAGNNNCTG	2 cut(s)	1108, 4067
CciI	TCATGA	1 cut(s)	1524
CfoI	GCGC	4 cut(s)	2546, 2739, 3444, 3587
Cfr10I	RCCGGY	1 cut(s)	3554
Cfr13I	GGNCC	3 cut(s)	611, 1022, 1223
ClaI	ATCGAT	1 cut(s)	80
CsiI	ACCWGGT	2 cut(s)	2509, 2839
Csp6I	GTAC	5 cut(s)	1321, 1802, 2570, 3312, 3784
CviQI	GTAC	5 cut(s)	1321, 1802, 2570, 3312, 3784
DraI	TTTAAA	1 cut(s)	642
DraIII	CACNNNGTG	1 cut(s)	2180
DrdI	GACNNNNNNGTC	1 cut(s)	3111
DriI	GACNNNNNGTC	1 cut(s)	31
DseDI	GACNNNNNNGTC	1 cut(s)	3111
Eam1104I	CTCTTC	6 cut(s)	48, 986, 1149, 1523, 2565, 2703
Eam1105I	GACNNNNNGTC	1 cut(s)	31
EarI	CTCTTC	6 cut(s)	48, 986, 1149, 1523, 2565, 2703
Ecl136II	GAGCTC	1 cut(s)	1174
Eco105I	TACGTA	1 cut(s)	359
Eco130I	CCWWGG	5 cut(s)	919, 1965, 2631, 2826, 3496
Eco147I	AGGCCT	1 cut(s)	2052
Eco24I	GRGCYC	1 cut(s)	1176
Eco31I	GGTCTC	2 cut(s)	1740, 2789
Eco32I	GATATC	2 cut(s)	2172, 2627
Eco47I	GGWCC	2 cut(s)	1022, 1223
Eco53kI	GAGCTC	1 cut(s)	1174
Eco57I	CTGAAG	5 cut(s)	1085, 1133, 3246, 3747, 3867
EcoICRI	GAGCTC	1 cut(s)	1174
EcoRI	GAATTC	2 cut(s)	1534, 1692
EcoRV	GATATC	2 cut(s)	2172, 2627
EcoT14I	CCWWGG	5 cut(s)	919, 1965, 2631, 2826, 3496
EcoT22I	ATGCAT	1 cut(s)	3453
EcoT38I	GRGCYC	1 cut(s)	1176
ErhI	CCWWGG	5 cut(s)	919, 1965, 2631, 2826, 3496
Esp3I	CGTCTC	2 cut(s)	356, 1157
FaqI	GGGAC	2 cut(s)	710, 1008
FauI	CCCGC	1 cut(s)	1253
FauNDI	CATATG	1 cut(s)	2038
FbaI	TGATCA	2 cut(s)	1014, 3729
FriOI	GRGCYC	1 cut(s)	1176
FspAI	RTGCGCAY	1 cut(s)	3443
FspI	TGCGCA	2 cut(s)	3443, 3586
GlaI	GCGC	4 cut(s)	2545, 2738, 3443, 3586
GsaI	CCCAGC	2 cut(s)	1766, 2550
GsuI	CTGGAG	3 cut(s)	82, 1874, 3102
HaeII	RGCGCY	1 cut(s)	2547
HaeIII	GGCC	4 cut(s)	545, 612, 2052, 3665
HapII	CCGG	4 cut(s)	1160, 1784, 2250, 3555
HhaI	GCGC	4 cut(s)	2546, 2739, 3444, 3587
Hin6I	GCGC	4 cut(s)	2544, 2737, 3442, 3585
HinP1I	GCGC	4 cut(s)	2544, 2737, 3442, 3585
HincII	GTYRAC	3 cut(s)	597, 999, 3849
HindII	GTYRAC	3 cut(s)	597, 999, 3849
HindIII	AAGCTT	5 cut(s)	67, 281, 1032, 1430, 2282
HpaI	GTTAAC	1 cut(s)	597
HpaII	CCGG	4 cut(s)	1160, 1784, 2250, 3555
HphI	GGTGA	7 cut(s)	239, 263, 424, 698, 1579, 3648, 4088
Hpy166II	GTNNAC	7 cut(s)	597, 999, 1226, 2062, 2141, 3806, 3849
Hpy8I	GTNNAC	7 cut(s)	597, 999, 1226, 2062, 2141, 3806, 3849
HpyAV	CCTTC	8 cut(s)	248, 356, 585, 862, 1196, 2364, 2597, 4081
HpyCH4IV	ACGT	3 cut(s)	191, 358, 1166
HpySE526I	ACGT	3 cut(s)	191, 358, 1166
HspAI	GCGC	4 cut(s)	2544, 2737, 3442, 3585
KpnI	GGTACC	1 cut(s)	1324
Ksp22I	TGATCA	2 cut(s)	1014, 3729
KspAI	GTTAAC	1 cut(s)	597
LmnI	GCTCC	2 cut(s)	287, 2449
Lsp1109I	GCAGC	9 cut(s)	182, 1117, 2582, 2721, 2878, 2944, 2947, 3412, 3856
MabI	ACCWGGT	2 cut(s)	2509, 2839
MaeII	ACGT	3 cut(s)	191, 358, 1166
MaeIII	GTNAC	8 cut(s)	92, 274, 691, 2486, 2663, 3176, 3460, 3987
MfeI	CAATTG	2 cut(s)	2883, 3009
MflI	RGATCY	3 cut(s)	915, 1408, 3334
MhlI	GDGCHC	1 cut(s)	1176
MlyI	GAGTC	7 cut(s)	41, 97, 1603, 2720, 2750, 3430, 3967
MmeI	TCCRAC	3 cut(s)	367, 931, 2812
Mph1103I	ATGCAT	1 cut(s)	3453
MroXI	GAANNNNTTC	5 cut(s)	1370, 1518, 3141, 3527, 3652
MseI	TTAA	5 cut(s)	596, 641, 1193, 1919, 2460
MslI	CAYNNNNRTG	3 cut(s)	1341, 1589, 3830
MspA1I	CMGCKG	4 cut(s)	1007, 1108, 2541, 3224
MspI	CCGG	4 cut(s)	1160, 1784, 2250, 3555
MunI	CAATTG	2 cut(s)	2883, 3009
Mva1269I	GAATGC	2 cut(s)	1079, 1580
MvnI	CGCG	1 cut(s)	3633
NciI	CCSGG	1 cut(s)	2250
NcoI	CCATGG	1 cut(s)	1965
NdeI	CATATG	1 cut(s)	2038
NheI	GCTAGC	1 cut(s)	712
NmeAIII	GCCGAG	1 cut(s)	857
NmuCI	GTSAC	2 cut(s)	2486, 3987
NruI	TCGCGA	1 cut(s)	3633
NsbI	TGCGCA	2 cut(s)	3443, 3586
NsiI	ATGCAT	1 cut(s)	3453
NspI	RCATGY	3 cut(s)	305, 502, 3110
PaeI	GCATGC	1 cut(s)	502
PagI	TCATGA	1 cut(s)	1524
PceI	AGGCCT	1 cut(s)	2052
PciI	ACATGT	1 cut(s)	3106
PcsI	WCGNNNNNNNCGW	1 cut(s)	355
PctI	GAATGC	2 cut(s)	1079, 1580
PdmI	GAANNNNTTC	5 cut(s)	1370, 1518, 3141, 3527, 3652
PfeI	GAWTC	8 cut(s)	82, 424, 1124, 2193, 2309, 2346, 3266, 3925
PflMI	CCANNNNNTGG	3 cut(s)	623, 3323, 3749
PfoI	TCCNGGA	1 cut(s)	2248
PleI	GAGTC	7 cut(s)	40, 96, 1603, 2719, 2750, 3429, 3967
PpsI	GAGTC	7 cut(s)	40, 96, 1603, 2719, 2750, 3429, 3967
Ppu21I	YACGTR	1 cut(s)	359
PscI	ACATGT	1 cut(s)	3106
Psp124BI	GAGCTC	1 cut(s)	1176
Psp1406I	AACGTT	1 cut(s)	191
PspFI	CCCAGC	2 cut(s)	1762, 2546
PspPI	GGNCC	3 cut(s)	611, 1022, 1223
PstNI	CAGNNNCTG	2 cut(s)	1108, 4067
PsuI	RGATCY	3 cut(s)	915, 1408, 3334
PvuII	CAGCTG	2 cut(s)	1108, 3224
RruI	TCGCGA	1 cut(s)	3633
RsaI	GTAC	5 cut(s)	1322, 1803, 2571, 3313, 3785
RsaNI	GTAC	5 cut(s)	1321, 1802, 2570, 3312, 3784
RseI	CAYNNNNRTG	3 cut(s)	1341, 1589, 3830
SacI	GAGCTC	1 cut(s)	1176
SaqAI	TTAA	5 cut(s)	596, 641, 1193, 1919, 2460
Sau96I	GGNCC	3 cut(s)	611, 1022, 1223
ScaI	AGTACT	1 cut(s)	3313
SchI	GAGTC	7 cut(s)	41, 97, 1603, 2720, 2750, 3430, 3967
SduI	GDGCHC	1 cut(s)	1176
SexAI	ACCWGGT	2 cut(s)	2509, 2839
SfcI	CTRYAG	1 cut(s)	2703
SinI	GGWCC	2 cut(s)	1022, 1223
SmiMI	CAYNNNNRTG	3 cut(s)	1341, 1589, 3830
SmlI	CTYRAG	4 cut(s)	674, 2230, 2792, 3121
SmoI	CTYRAG	4 cut(s)	674, 2230, 2792, 3121
SnaBI	TACGTA	1 cut(s)	359
SpeI	ACTAGT	2 cut(s)	1135, 4123
SphI	GCATGC	1 cut(s)	502
SseBI	AGGCCT	1 cut(s)	2052
SsiI	CCGC	9 cut(s)	1007, 1260, 1324, 1974, 1986, 2541, 2875, 3716, 3935
SspI	AATATT	1 cut(s)	3037
SstI	GAGCTC	1 cut(s)	1176
StuI	AGGCCT	1 cut(s)	2052
StyI	CCWWGG	5 cut(s)	919, 1965, 2631, 2826, 3496
TaiI	ACGT	3 cut(s)	194, 361, 1169
TaqI	TCGA	7 cut(s)	80, 435, 759, 1364, 2316, 2892, 3135
TatI	WGTACW	2 cut(s)	2569, 3311
TauI	GCSGC	5 cut(s)	1976, 1988, 2544, 2878, 3937
TfiI	GAWTC	8 cut(s)	82, 424, 1124, 2193, 2309, 2346, 3266, 3925
Tru1I	TTAA	5 cut(s)	596, 641, 1193, 1919, 2460
Tru9I	TTAA	5 cut(s)	596, 641, 1193, 1919, 2460
TseFI	GTSAC	2 cut(s)	2486, 3987
TseI	GCWGC	9 cut(s)	170, 1105, 2595, 2734, 2866, 2957, 2960, 3400, 3869
Tsp45I	GTSAC	2 cut(s)	2486, 3987
TspGWI	ACGGA	2 cut(s)	1343, 3414
Van91I	CCANNNNNTGG	3 cut(s)	623, 3323, 3749
VpaK11BI	GGWCC	2 cut(s)	1022, 1223
XapI	RAATTY	7 cut(s)	1369, 1534, 1692, 2292, 3137, 3638, 3939
XbaI	TCTAGA	2 cut(s)	1063, 2342
XceI	RCATGY	3 cut(s)	305, 502, 3110
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1681, 2371, 2920
XmnI	GAANNNNTTC	5 cut(s)	1370, 1518, 3141, 3527, 3652
ZrmI	AGTACT	1 cut(s)	3313
Zsp2I	ATGCAT	1 cut(s)	3453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.