Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0008205

Physical Location & Seq

Genomic Coordinates Reverse (-)

6941587 .. 6959150

Gene Structure 17564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG086600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3555 bp

ATGACTGTCAGGGAAATACTTGATTTTTCAGCTCGCTGTCAGGGTATTGGAAGCCGAGCCGATATTATGCTGGAAGTCAGTAAAAGGGAGAAGGAGGCAGGGATTATTCCACATCCAGATATAGATACTTACATGAAGGCAATTTCTCTCCAAGGACTGAAAAGAACCCTCCAGACGGACTACATTTTGAAGATCCTTGGACTTGATATATGTGCTGACACTCTAGTTGGAGATGCCATGCTAACAGGTATATCTGGTGGTCAAAAGAAGAGGTTGACAACAGCGGAGATGATCATTGGTCCCACAAAAGCTTTGTTCATGGATGAGATAACAAATGGTCTAGACAGTTCCACTGCATTCCAAATTGTTGCTTGTCTTCAGCAGCTGGTGCATATAACAGATTCTACTTTACTAGTTTCTCTTCTTCAGCCAGCACCGGAGACGTTTGAGCTCTTTGATGACCTTATTTTAATGTCAGAAGGGAAGATTGTTTATCATGGTCCACGGGATCATGTCTTGGAGTTTTTTGAGGATTGTGGGTTCAAGTGTCCTGAGAGGAAAGGGGTTGCTGATTTCATCCAAGAGGTAATCTCTAAGAAAGATCAAGCACACTATTGGTACCGCACGGAACCTCACAATTATGTCTCAGTTGATATGTTCTCGAAAAAATTCAAGGCATCTTCTTTTGGGAAGAAGCTAGATGAGGATCTTTTAGAGCCATTTGATAAGCTTCAAGACAATAACAATGCTCTTTCCGTTAGTGTGTATTCTCTTTCTAAATGGGAACTTTTTAGAGCTTGTTCGTCAAGAGAACTTCTTCTCATGAAGAGGAATTCTTTTATCTATGTATTCAAGACAGTTCAGCTTATCATCATTGCATTTATCACCATGACTGTATTTCTGAGGACTCGAATGGATATTGATGTTCTTCATGCAAACTACTACATGGGTTCCCTATTCTTTGCTCTTACCATACTTCTCGTGGATGGAATTCCTGAGTTGTCTATGACACTTCAAAGACTAGAAGTTTTCTATAAGCAGAGAGACCTGTGTTTTTATCCAGCTTGGGCTTATGCAATTCCGGCAACACTACTGAAAGTACCTGTTTCATTTGTGGAAGCCCTGGTTTGGACTTCTCTTACTTACTATGTCATTGGATACAGTCCTGAGTTCCAAAAGTTCATCCTCCAGTTCTTTCTACTTTTTGCCGTTCATTTAACATCAATATCCATGTTTCGCTTCCTGGCATCATTCTTTCAGACCATGGTTGCCGCAATGACAGCCGGTAGTTTTGCAATGTTGTTTCTGTTGCTATTCAGCGGATTCATTATCAAAAAACCTTCCATGCCTGGTTGGTTAGAGTGGGGATTTTGGGTTTCCCCACTGACATATGGGGAGATAGGCCTCTCTGTGAACGAGTTTCTTTCTCCAAGATGGCAAACAATGCCATCAACGAACATTACTATTGGGCATGAAACCCTTGAAAGCCGTGGACTAAACTTTGATGGATATTTCTACTGGATATCACTTGGTGCCTTATTTGGATTCACAATGATTTTCAACATAGGATACATCTTGTCCTTGAGTTTCTTGAAGTCTCCCGGATCATCTCATGGTATCATTTCACATGAAAAGCTTGCCCAAATTCAAAGAACTGATGATTCCCTCGATGATGCCCAAGTGAAAGAAAAGTCTAGAATTCATCCTTCTAAAACCACTGGCAAGATGGTCTTACCCTTTACTCCATTGACACTGGTTTTCCAAGATGTGCAATACTACGTTATTCCTATGGAAACCAGGGAGCCAGGATTTAATCAGAAGAAACTTCAACTTCTAAGTGACATTACAGGGGCATTTAGACCTGGTGTTCTTACAGCATTGATGGGCGTCAGCGGCGCTGGGAAAACCACTCTTCTTGATGTTCTTGCAGGCAGAAAGACTACTGGCTGCATTGAAGGAGACATAAAGATTGGTGGATATCCCAAGGTTCAAGAAACATTTGCTAGGGTATTGGGTTACTGTGAGCAAACCGATGTTCATTCTCCACAAATCACTGTAGAAGAGTCTTTGATGTTTTCTGCTTGGCTGCGCCTGGCTTCTCAGATTGACTCAAAGACAAAAACTGAGTTTGTCAATGAAGTCCTTGAGACCATTGAGCTTGATGGAATAAAAGATGCCTTTGTTGGAATACCTGGTGTTAGTGGTCTATCAAATGAGCAGCGTAAGCGGCTTACAATTGCTGTCGAGCTTGTTTCAAATCCCTCCATAATCTTCATGGATGAACCTACAACTGGTTTGGATGCAAGAGCTGCTGCAATAGTCATGCGAGCAGTGAAGAATGTAGCTGATACGGGAAGAACAATTGTTTGCACCATCCACCAACCGAATATTGATATATTTGAAGCATTTGATGAGCTAATTCTTTTGAAAACTGGAGGGCGTATGATCTACTCAGGACAGGTGGGTCAGCACTCGAGTAGAGTTATCGAATATTTTCAGAGTATTCCTGGCGTTCAAAAGATCAAAAGTAACTACAATCCAGCTACATGGATGTTAGACATCACTTCTACATCAGCTGAAGCTGAACATGGTGTTGATTTTGCCCAAATATACAGAGAATCTAGTTTATATGGGAATAATATAGAGCTTGCAAGACAGTTGAGTACTCCACCTCCTGGTTCCAGAGATCTGCATTTTGCTACACGCTTTTCACAAAATGGCTGGATGCAGTTCAAATCTTGCCTATGGAAGCAGCACTTGTCTTATTGGAGGAGTCCGTCATATAACTTGATGCGCATCATGCATACGGTTGTATCATCTCTAATTTTCGGGACATTGTATTGGAACCAAGGGAGGAAAATAACCGACCAGCAGAACTTATTCAATATACTTGGTTCTATGTATGCTGGTGTCATCTTCTTGGGCATAAATAACTGCGCAACTGTTCTGCAATATGTTGCCACTGAGAGAACTGTCATGTATCGTGAAAAATTTGTGGGGATGTATTCACCATTGGCCTTTTCGGTTGCACAGGTGGTGGTTGAACTTCCCTATATATTTATCGAGGCAGTCTTATTTATGATCATCACATATCCAATGATTGGGTATTATGCTTCAGCATATAAGGTTTTCTGGTACTTCTATGCCTTATTTTGTTCACTGCTATACTACAATTACATGGGAATGATGCTCGTTTCGTTGACGCCAAACTTCATGGTAGCTGCAATTCTATCTTCAGTGTTCTACACAGTGTATAACCTATTTGCTGGTTTTGTGATTCCGAAGCCGCAAATTCCGAAATGGTGGATTTGGTTGTATTACCTGACTCCCTCATCTTGGTCACTAAATGGTTTGCTCACTTCACAATATGGAGACATAAACAAGGAGATTATCATATTTGGGGAACCCAAAACAGTGTCTGCCTTCTTGAAAGACTACTTTGGGTTTCACCATGATCAGTTGGCTCTGGTGGCACTAGTTCTCATTGCATTTCCCATAGCTTTTGCATCTATTTTCGCCTACTGTATCGGACGGTTGAACTTCCAGAGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0009506 GO:0009719 GO:0009725 GO:0009733 GO:0009914 GO:0009926 GO:0009987 GO:0010033 GO:0010243 GO:0010817 GO:0014070 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022622 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071365 GO:0071366 GO:0071407 GO:0071417 GO:0071495 GO:0071944 GO:0080026 GO:0099402 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1184

Amino Acids

134.1

Weight (kDa)

6.52

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane_7	PF19055	143 - 196	2e-06	ABC-2 type transporter
ABC2_membrane	PF01061	263 - 474	1.9e-46	ABC-2 type transporter
PDR_assoc	PF08370	479 - 541	3.6e-21	Plant PDR ABC transporter associated
ABC_tran	PF00005	612 - 764	5.5e-21	ABC transporter
ABC2_membrane	PF01061	910 - 1123	1.4e-56	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0008205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37280 AT2G37280 AT2G37280 AT2G37280 AT3G53480
fragaria_vesca	FvH4_6g08380 FvH4_6g08380 FvH4_6g08380
malus_domestica	MD04G1187600.v1.1
prunus_persica	Prupe.6G306100_v2.0.a1
pyrus_communis	pycom04g16590
rosa_chinensis	RchiOBHm_Chr3g0458321
rosa_laevigata	RLG00000025169
rosa_multiflora	Rmu_sc0007338.1_g000006
rosa_roxburghii	Rroxscaffold_6G00421170
rosa_rugosa	Rorug03G0025800 Rorug03G0025800 Rorug03G0025800
rosa_samantha	Rh3AG086600 Rh3BG089400 Rh3CG089800 Rh3DG090400
rosa_wichuraiana	Rw3G007350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2463
Acc16I	TGCGCA	2 cut(s)	2795, 2938
Acc65I	GGTACC	1 cut(s)	618
AccB1I	GGYRCC	2 cut(s)	618, 1532
AccB7I	CCANNNNNTGG	2 cut(s)	2675, 3101
AciI	CCGC	7 cut(s)	284, 622, 1272, 1320, 1893, 2227, 3287
AclWI	GGATC	4 cut(s)	187, 516, 714, 1612
AcsI	RAATTY	7 cut(s)	668, 832, 990, 1644, 1698, 2990, 3291
AcuI	CTGAAG	5 cut(s)	362, 410, 2598, 3099, 3219
AcyI	GRCGYC	2 cut(s)	1887, 3203
AdeI	CACNNNGTG	1 cut(s)	1532
AfaI	GTAC	4 cut(s)	620, 1101, 2665, 3137
AfiI	CCNNNNNNNGG	6 cut(s)	175, 1128, 2291, 2675, 3101, 3336
AhlI	ACTAGT	2 cut(s)	412, 3475
AloI	GAACNNNNNNTCC	2 cut(s)	524, 556
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	7 cut(s)	434, 649, 1038, 1602, 1953, 2141, 3366
AlwI	GGATC	4 cut(s)	187, 516, 714, 1612
AlwNI	CAGNNNCTG	2 cut(s)	385, 3419
Ama87I	CYCGRG	1 cut(s)	2473
AoxI	GGCC	2 cut(s)	1402, 3015
ApeKI	GCWGC	8 cut(s)	382, 1947, 2086, 2218, 2309, 2312, 2752, 3221
ApoI	RAATTY	7 cut(s)	668, 832, 990, 1644, 1698, 2990, 3291
Asp700I	GAANNNNTTC	4 cut(s)	668, 816, 2493, 2879
Asp718I	GGTACC	1 cut(s)	618
AspLEI	GCGC	4 cut(s)	1898, 2091, 2796, 2939
AspS9I	GGNCC	2 cut(s)	299, 500
AsuC2I	CCSGG	1 cut(s)	1602
AsuHPI	GGTGA	3 cut(s)	877, 3000, 3440
AvaI	CYCGRG	1 cut(s)	2473
AvaII	GGWCC	2 cut(s)	299, 500
BaeI	ACNNNNGTAYC	2 cut(s)	2796, 2829
BanI	GGYRCC	2 cut(s)	618, 1532
BanII	GRGCYC	1 cut(s)	453
BauI	CACGAG	1 cut(s)	980
BbsI	GAAGAC	1 cut(s)	368
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	8 cut(s)	394, 1934, 2073, 2230, 2296, 2299, 2764, 3208
BccI	CCATC	8 cut(s)	980, 1428, 1456, 1499, 1720, 1876, 2156, 2381
BceAI	ACGGC	2 cut(s)	1193, 1473
BciVI	GTATCC	2 cut(s)	1151, 1562
BclI	TGATCA	3 cut(s)	291, 3081, 3454
BcnI	CCSGG	1 cut(s)	1602
BcoDI	GTCTC	7 cut(s)	434, 649, 1038, 1602, 1953, 2141, 3366
BcuI	ACTAGT	2 cut(s)	412, 3475
BfaI	CTAG	9 cut(s)	224, 341, 413, 698, 1022, 1695, 2004, 2622, 3476
BfmI	CTRYAG	1 cut(s)	2055
BfoI	RGCGCY	1 cut(s)	1899
BfuI	GTATCC	2 cut(s)	1151, 1562
BglII	AGATCT	1 cut(s)	2686
BmcAI	AGTACT	1 cut(s)	2665
Bme18I	GGWCC	2 cut(s)	299, 500
BmeT110I	CYCGRG	1 cut(s)	2473
BmgT120I	GGNCC	2 cut(s)	299, 500
BmiI	GGNNCC	9 cut(s)	301, 620, 630, 952, 1534, 1803, 2680, 2846, 3405
BpiI	GAAGAC	1 cut(s)	368
BplI	GAGNNNNNCTC	2 cut(s)	575, 607
BpmI	CTGGAG	3 cut(s)	155, 1172, 2454
BpuEI	CTTGAG	2 cut(s)	1603, 2165
BpuMI	CCSGG	1 cut(s)	1602
BsaBI	GATNNNNATC	2 cut(s)	705, 2795
BsaHI	GRCGYC	2 cut(s)	1887, 3203
BsaI	GGTCTC	2 cut(s)	1038, 2141
BsaJI	CCNNGG	9 cut(s)	151, 196, 503, 1122, 1263, 1489, 1797, 1983, 2848
BsaWI	WCCGGW	1 cut(s)	436
BsaXI	ACNNNNNCTCC	2 cut(s)	2656, 2686
Bsc4I	CCNNNNNNNGG	6 cut(s)	175, 1128, 2291, 2675, 3101, 3336
Bse118I	RCCGGY	1 cut(s)	1283
Bse1I	ACTGG	7 cut(s)	1189, 1523, 1723, 1758, 1948, 2296, 2437
Bse3DI	GCAATG	4 cut(s)	873, 1281, 1302, 3483
Bse8I	GATNNNNATC	2 cut(s)	705, 2795
BseDI	CCNNGG	9 cut(s)	151, 196, 503, 1122, 1263, 1489, 1797, 1983, 2848
BseJI	GATNNNNATC	2 cut(s)	705, 2795
BseLI	CCNNNNNNNGG	6 cut(s)	175, 1128, 2291, 2675, 3101, 3336
BseMI	GCAATG	4 cut(s)	873, 1281, 1302, 3483
BseMII	CTCAG	9 cut(s)	543, 660, 893, 987, 1158, 2114, 2115, 2466, 2955
BseNI	ACTGG	7 cut(s)	1189, 1523, 1723, 1758, 1948, 2296, 2437
BseRI	GAGGAG	1 cut(s)	2785
BseXI	GCAGC	8 cut(s)	394, 1934, 2073, 2230, 2296, 2299, 2764, 3208
BseYI	CCCAGC	1 cut(s)	1898
BshFI	GGCC	2 cut(s)	1404, 3017
BshNI	GGYRCC	2 cut(s)	618, 1532
BsiHKAI	GWGCWC	1 cut(s)	453
BsiHKCI	CYCGRG	1 cut(s)	2473
BsiSI	CCGG	4 cut(s)	437, 1082, 1284, 1602
BslFI	GGGAC	2 cut(s)	285, 2845
BslI	CCNNNNNNNGG	6 cut(s)	175, 1128, 2291, 2675, 3101, 3336
BsmAI	GTCTC	7 cut(s)	434, 649, 1038, 1602, 1953, 2141, 3366
BsmBI	CGTCTC	1 cut(s)	434
BsmFI	GGGAC	2 cut(s)	285, 2845
BsmI	GAATGC	1 cut(s)	356
BsnI	GGCC	2 cut(s)	1404, 3017
Bso31I	GGTCTC	2 cut(s)	1038, 2141
BsoBI	CYCGRG	1 cut(s)	2473
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp19I	CCATGG	1 cut(s)	1263
BspACI	CCGC	7 cut(s)	284, 622, 1272, 1320, 1893, 2227, 3287
BspANI	GGCC	2 cut(s)	1404, 3017
BspCNI	CTCAG	9 cut(s)	544, 659, 894, 988, 1159, 2113, 2116, 2465, 2956
BspHI	TCATGA	1 cut(s)	822
BspLI	GGNNCC	9 cut(s)	301, 620, 630, 952, 1534, 1803, 2680, 2846, 3405
BspPI	GGATC	4 cut(s)	187, 516, 714, 1612
BspT107I	GGYRCC	2 cut(s)	618, 1532
BspTNI	GGTCTC	2 cut(s)	1038, 2141
BsrDI	GCAATG	4 cut(s)	873, 1281, 1302, 3483
BsrFI	RCCGGY	1 cut(s)	1283
BsrI	ACTGG	7 cut(s)	1189, 1523, 1723, 1758, 1948, 2296, 2437
BssAI	RCCGGY	1 cut(s)	1283
BssECI	CCNNGG	9 cut(s)	151, 196, 503, 1122, 1263, 1489, 1797, 1983, 2848
BssNI	GRCGYC	2 cut(s)	1887, 3203
BssSI	CACGAG	1 cut(s)	980
BssT1I	CCWWGG	5 cut(s)	151, 196, 1263, 1983, 2848
Bst2BI	CACGAG	1 cut(s)	980
Bst6I	CTCTTC	5 cut(s)	263, 426, 821, 1917, 2055
BstACI	GRCGYC	2 cut(s)	1887, 3203
BstAPI	GCANNNNNTGC	3 cut(s)	388, 1444, 2309
BstC8I	GCNNGC	6 cut(s)	34, 432, 1638, 1930, 2328, 2649
BstDSI	CCRYGG	3 cut(s)	503, 1263, 1489
BstH2I	RGCGCY	1 cut(s)	1899
BstHHI	GCGC	4 cut(s)	1898, 2091, 2796, 2939
BstMAI	GTCTC	7 cut(s)	434, 649, 1038, 1602, 1953, 2141, 3366
BstSFI	CTRYAG	1 cut(s)	2055
BstV1I	GCAGC	8 cut(s)	394, 1934, 2073, 2230, 2296, 2299, 2764, 3208
BstV2I	GAAGAC	1 cut(s)	368
BstX2I	RGATCY	3 cut(s)	192, 706, 2686
BstXI	CCANNNNNNTGG	1 cut(s)	2547
BstYI	RGATCY	3 cut(s)	192, 706, 2686
BsuI	GTATCC	2 cut(s)	1151, 1562
BsuRI	GGCC	2 cut(s)	1404, 3017
BtgI	CCRYGG	3 cut(s)	503, 1263, 1489
BtsI	GCAGTG	3 cut(s)	351, 2337, 3158
Cac8I	GCNNGC	6 cut(s)	34, 432, 1638, 1930, 2328, 2649
CaiI	CAGNNNCTG	2 cut(s)	385, 3419
CciI	TCATGA	1 cut(s)	822
CfoI	GCGC	4 cut(s)	1898, 2091, 2796, 2939
Cfr10I	RCCGGY	1 cut(s)	1283
Cfr13I	GGNCC	2 cut(s)	299, 500
CseI	GACGC	2 cut(s)	1876, 3211
CsiI	ACCWGGT	2 cut(s)	1861, 2191
Csp6I	GTAC	4 cut(s)	619, 1100, 2664, 3136
CspCI	CAANNNNNGTGG	2 cut(s)	1897, 1932
CviQI	GTAC	4 cut(s)	619, 1100, 2664, 3136
DraIII	CACNNNGTG	1 cut(s)	1532
DrdI	GACNNNNNNGTC	1 cut(s)	2463
DseDI	GACNNNNNNGTC	1 cut(s)	2463
Eam1104I	CTCTTC	5 cut(s)	263, 426, 821, 1917, 2055
EarI	CTCTTC	5 cut(s)	263, 426, 821, 1917, 2055
Ecl136II	GAGCTC	1 cut(s)	451
Eco130I	CCWWGG	5 cut(s)	151, 196, 1263, 1983, 2848
Eco147I	AGGCCT	1 cut(s)	1404
Eco24I	GRGCYC	1 cut(s)	453
Eco31I	GGTCTC	2 cut(s)	1038, 2141
Eco32I	GATATC	2 cut(s)	1524, 1979
Eco47I	GGWCC	2 cut(s)	299, 500
Eco53kI	GAGCTC	1 cut(s)	451
Eco57I	CTGAAG	5 cut(s)	362, 410, 2598, 3099, 3219
Eco88I	CYCGRG	1 cut(s)	2473
EcoICRI	GAGCTC	1 cut(s)	451
EcoRI	GAATTC	3 cut(s)	832, 990, 1698
EcoRV	GATATC	2 cut(s)	1524, 1979
EcoT14I	CCWWGG	5 cut(s)	151, 196, 1263, 1983, 2848
EcoT22I	ATGCAT	1 cut(s)	2805
EcoT38I	GRGCYC	1 cut(s)	453
ErhI	CCWWGG	5 cut(s)	151, 196, 1263, 1983, 2848
Esp3I	CGTCTC	1 cut(s)	434
FalI	AAGNNNNNCTT	4 cut(s)	1715, 1747, 2741, 2773
FaqI	GGGAC	2 cut(s)	285, 2845
FauNDI	CATATG	1 cut(s)	1390
FbaI	TGATCA	3 cut(s)	291, 3081, 3454
FriOI	GRGCYC	1 cut(s)	453
FspAI	RTGCGCAY	1 cut(s)	2795
FspBI	CTAG	9 cut(s)	224, 341, 413, 698, 1022, 1695, 2004, 2622, 3476
FspI	TGCGCA	2 cut(s)	2795, 2938
GlaI	GCGC	4 cut(s)	1897, 2090, 2795, 2938
GsaI	CCCAGC	1 cut(s)	1902
GsuI	CTGGAG	3 cut(s)	155, 1172, 2454
HaeII	RGCGCY	1 cut(s)	1899
HaeIII	GGCC	2 cut(s)	1404, 3017
HapII	CCGG	4 cut(s)	437, 1082, 1284, 1602
HgaI	GACGC	2 cut(s)	1876, 3211
HhaI	GCGC	4 cut(s)	1898, 2091, 2796, 2939
Hin1I	GRCGYC	2 cut(s)	1887, 3203
Hin6I	GCGC	4 cut(s)	1896, 2089, 2794, 2937
HinP1I	GCGC	4 cut(s)	1896, 2089, 2794, 2937
HincII	GTYRAC	2 cut(s)	276, 3201
HindII	GTYRAC	2 cut(s)	276, 3201
HindIII	AAGCTT	3 cut(s)	309, 728, 1634
HpaII	CCGG	4 cut(s)	437, 1082, 1284, 1602
HphI	GGTGA	3 cut(s)	877, 3000, 3440
Hpy166II	GTNNAC	6 cut(s)	276, 503, 1414, 1493, 3158, 3201
Hpy188I	TCNGA	9 cut(s)	478, 903, 1260, 1818, 2103, 2499, 3282, 3297, 3530
Hpy8I	GTNNAC	6 cut(s)	276, 503, 1414, 1493, 3158, 3201
HpyAV	CCTTC	7 cut(s)	85, 130, 473, 1350, 1716, 1949, 3433
HpyCH4IV	ACGT	2 cut(s)	443, 1779
HpySE526I	ACGT	2 cut(s)	443, 1779
Hsp92I	GRCGYC	2 cut(s)	1887, 3203
HspAI	GCGC	4 cut(s)	1896, 2089, 2794, 2937
KpnI	GGTACC	1 cut(s)	622
Ksp22I	TGATCA	3 cut(s)	291, 3081, 3454
LmnI	GCTCC	1 cut(s)	1801
Lsp1109I	GCAGC	8 cut(s)	394, 1934, 2073, 2230, 2296, 2299, 2764, 3208
MabI	ACCWGGT	2 cut(s)	1861, 2191
MaeI	CTAG	9 cut(s)	224, 341, 413, 698, 1022, 1695, 2004, 2622, 3476
MaeII	ACGT	2 cut(s)	443, 1779
MaeIII	GTNAC	4 cut(s)	1838, 2015, 2528, 3339
MfeI	CAATTG	2 cut(s)	2235, 2361
MflI	RGATCY	3 cut(s)	192, 706, 2686
MhlI	GDGCHC	1 cut(s)	453
MlyI	GAGTC	5 cut(s)	901, 2072, 2102, 2782, 3319
MmeI	TCCRAC	2 cut(s)	208, 2164
Mph1103I	ATGCAT	1 cut(s)	2805
MroXI	GAANNNNTTC	4 cut(s)	668, 816, 2493, 2879
MseI	TTAA	3 cut(s)	470, 1217, 1812
MslI	CAYNNNNRTG	2 cut(s)	639, 3182
MspA1I	CMGCKG	5 cut(s)	284, 385, 1320, 1893, 2576
MspI	CCGG	4 cut(s)	437, 1082, 1284, 1602
MunI	CAATTG	2 cut(s)	2235, 2361
Mva1269I	GAATGC	1 cut(s)	356
NciI	CCSGG	1 cut(s)	1602
NcoI	CCATGG	1 cut(s)	1263
NdeI	CATATG	1 cut(s)	1390
NlaIV	GGNNCC	9 cut(s)	301, 620, 630, 952, 1534, 1803, 2680, 2846, 3405
NmeAIII	GCCGAG	1 cut(s)	80
NmuCI	GTSAC	2 cut(s)	1838, 3339
NsbI	TGCGCA	2 cut(s)	2795, 2938
NsiI	ATGCAT	1 cut(s)	2805
PaeR7I	CTCGAG	1 cut(s)	2473
PagI	TCATGA	1 cut(s)	822
PceI	AGGCCT	1 cut(s)	1404
PctI	GAATGC	1 cut(s)	356
PdmI	GAANNNNTTC	4 cut(s)	668, 816, 2493, 2879
PfeI	GAWTC	6 cut(s)	401, 1323, 1545, 1661, 2618, 3277
PflMI	CCANNNNNTGG	2 cut(s)	2675, 3101
PfoI	TCCNGGA	1 cut(s)	1600
PleI	GAGTC	5 cut(s)	901, 2071, 2102, 2781, 3319
PpsI	GAGTC	5 cut(s)	901, 2071, 2102, 2781, 3319
Psp124BI	GAGCTC	1 cut(s)	453
PspFI	CCCAGC	1 cut(s)	1898
PspN4I	GGNNCC	9 cut(s)	301, 620, 630, 952, 1534, 1803, 2680, 2846, 3405
PspPI	GGNCC	2 cut(s)	299, 500
PspXI	VCTCGAGB	1 cut(s)	2473
PstNI	CAGNNNCTG	2 cut(s)	385, 3419
PsuI	RGATCY	3 cut(s)	192, 706, 2686
PvuII	CAGCTG	2 cut(s)	385, 2576
RsaI	GTAC	4 cut(s)	620, 1101, 2665, 3137
RsaNI	GTAC	4 cut(s)	619, 1100, 2664, 3136
RseI	CAYNNNNRTG	2 cut(s)	639, 3182
SacI	GAGCTC	1 cut(s)	453
SaqAI	TTAA	3 cut(s)	470, 1217, 1812
Sau96I	GGNCC	2 cut(s)	299, 500
ScaI	AGTACT	1 cut(s)	2665
SchI	GAGTC	5 cut(s)	901, 2072, 2102, 2782, 3319
SduI	GDGCHC	1 cut(s)	453
SexAI	ACCWGGT	2 cut(s)	1861, 2191
SfcI	CTRYAG	1 cut(s)	2055
Sfr274I	CTCGAG	1 cut(s)	2473
SinI	GGWCC	2 cut(s)	299, 500
SlaI	CTCGAG	1 cut(s)	2473
SmiMI	CAYNNNNRTG	2 cut(s)	639, 3182
SmlI	CTYRAG	3 cut(s)	1582, 2144, 2473
SmoI	CTYRAG	3 cut(s)	1582, 2144, 2473
SpeI	ACTAGT	2 cut(s)	412, 3475
SseBI	AGGCCT	1 cut(s)	1404
SsiI	CCGC	7 cut(s)	284, 622, 1272, 1320, 1893, 2227, 3287
SspI	AATATT	2 cut(s)	2389, 2492
SspMI	CTAG	9 cut(s)	224, 341, 413, 698, 1022, 1695, 2004, 2622, 3476
SstI	GAGCTC	1 cut(s)	453
StuI	AGGCCT	1 cut(s)	1404
StyI	CCWWGG	5 cut(s)	151, 196, 1263, 1983, 2848
TaiI	ACGT	2 cut(s)	446, 1782
TaqI	TCGA	7 cut(s)	662, 910, 1668, 2244, 2474, 2487, 3063
TatI	WGTACW	1 cut(s)	2663
TauI	GCSGC	4 cut(s)	1274, 1896, 2230, 3289
TfiI	GAWTC	6 cut(s)	401, 1323, 1545, 1661, 2618, 3277
Tru1I	TTAA	3 cut(s)	470, 1217, 1812
Tru9I	TTAA	3 cut(s)	470, 1217, 1812
TseFI	GTSAC	2 cut(s)	1838, 3339
TseI	GCWGC	8 cut(s)	382, 1947, 2086, 2218, 2309, 2312, 2752, 3221
Tsp45I	GTSAC	2 cut(s)	1838, 3339
TspGWI	ACGGA	4 cut(s)	191, 641, 745, 2766
Van91I	CCANNNNNTGG	2 cut(s)	2675, 3101
VpaK11BI	GGWCC	2 cut(s)	299, 500
XapI	RAATTY	7 cut(s)	668, 832, 990, 1644, 1698, 2990, 3291
XbaI	TCTAGA	2 cut(s)	340, 1694
XcmI	CCANNNNNNNNNTGG	3 cut(s)	979, 1723, 2272
XhoI	CTCGAG	1 cut(s)	2473
XmnI	GAANNNNTTC	4 cut(s)	668, 816, 2493, 2879
XspI	CTAG	9 cut(s)	224, 341, 413, 698, 1022, 1695, 2004, 2622, 3476
ZrmI	AGTACT	1 cut(s)	2665
Zsp2I	ATGCAT	1 cut(s)	2805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.