Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0008205

Physical Location & Seq

Genomic Coordinates Reverse (-)

6788395 .. 6796594

Gene Structure 8200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G007350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4437 bp

ATGTTCTGTTCTACTGAGGCTCTTCTTTGCACAGAATCTGCTGATCATCAGTTCAGCTGTGTTCCGAGTCCGATGACTTTAAGCTTAAGTATCCTGCATATTTATATACTCCTCCAGTCAGTTATTCTTCAAACTGTCACAAAGTTAATAACTATGGCTCAGATGGTTGGCAGAGATGACATAGAGTCGCTTAGAATTGAGTTGGAAGAGATAGGAAGAAGCTTTAGGTCATCAATTCAGAGTCGTAACTCCAGTTTCCGAGCCAATTCAGCATTGAGTTCTGCCAAAGATGACACTGATGCTCAATATGCTGTGCAGTGGGCAGCCATTGAGAGACTGCCAACGTTTGAACGGCTCAAATCATCTTTATTTGACAAGGGTGATGATGGAAATGAACTTGATGGTGAAGGAAAGCGGGTGGTTGATGTTACCAAGCTTGGAGCTATGGAAAAGCATGTCTTCATAGATAAGCTCATCAAGCACATCGAGAATGACAACCTTCGTCTCTTACGTAAAATCAGAAAAAGGATAGACAAGGTTGGAGTAAAGTTGCCCACTGTGGAGGTGAGGTATAAGAATCTCAGTGTCGAAGCAGTGTGTGAGGTAGTTCATGGAAAGCCCCTCCCAACTCTTTGGAACTCTGTCAGAAGCACACTTTCTCTCTTTGCCAAGTTTCTAGGTTCCAAGACACAAGAGGCCAAGATAAGCATTATCAAAGACTTTTGTGGTTCAATAAAGCCTGGAAGGTTAACTTTACTGCTTGGCCCCCCAGGATGTGGGAAGACCTCCTTTTTAAAGGCTCTATCAGGAAATCTGGAAAAATCGCTCAAGTTCTCTGGTGAAGTTACTTACAATGGACAGAAGCTAGCAGAGTTCATCCCCCAGAAAACATCAGCTTATATAAGCCAATTCGACCTGCATATTCCTCAGATGACTGTCAGGGAAATACTTGATTTTTCAGCTCGCTGTCAGGGTATTGGAAGCCGAGCCGATATTATGCTGGAAGTCAGTAAAAGGGAGAAGGAGGCAGGGATTATTCCACATCCAGATATAGATACTTACATGAAGGCAATTTCTCTCCAAGGACTGAAAAGAACCCTCCAGACGGACTACATTTTGAAGATCCTTGGACTTGATATATGTGCTGACACTCTAGTTGGAGATGCCATGCTAAGAGGTATATCTGGTGGTCAAAAGAAGAGGTTGACAACAGCGGAGATGATCATTGGTCCCACAAAAGCTTTGTTCATGGATGAGATAACAAATGGTCTAGACAGTTCCACTGCATTTCAAATTGTTGCTTGTCTTCAGCAGCTGGTGCATATAACAGATTCTACTTTACTAGTTTCTCTTCTTCAGCCAGCACCGGAGACATTTGAGCTCTTTGATGACCTTATTTTAATGTCAGAAGGGAAGATTGTTTATCATGGTCCACGGGATCATGTCTTGGAGTTTTTTGAGGATTGTGGGTTCAAGTGTCCTGAGAGGAAAGGGGTTGCTGATTTCATCCAAGAGGTAATCTCTAAGAAAGATCAAGCACACTATTGGTACCGCATGGAACCTCACAATTATGCATCTTCTTTTGGGAAGAAGCTAGATGAGGATCTTTTAGAGCCATTTGATAAGCTTAAAGACAATAACAATGCTCTTTCCTTTAGTGTGTATTCTCTTTCTAAATGGGAACTTTTTAGAGCTTGTTCGTCAAGAGAACTTCTTCTCATGAAGAGGAATTCTTTTATCTATGTATTCAAGACAGTTCAGATTATCATCATTGCATTTATCACCATGACTGTATTTCTGAGGACTCGTATGGATATTGATGTTCTTCATGCAAACTACTACATGGGTTCCCTATTCTTTGCTCTTACCATACTTCTCGTGGATGGAATTCCTGAGTTGTCTATGACACTTCAAAGACTAGAAGTTTTCTATAAGCAGAGAGACCTGTGTTTTTATCCAGCTTGGGCTTATGCAATTCCGGCAACACTACTGAAAGTACCTGTTTCATTTGTGGAAGCCCTGGTTTGGACTTCTCTTACTTACTATGTCATTGGATACAGTCCTGAGTTCCAAAAGTTCATCCTCCAGTTCTTTCTACTTTTTGCCGTTCATTTAACATCAATATCCATGTTTCGCTTCCTGGCATCATTCTTTCAGACCATGGTTGCCGCAATGACAGCCGGTAGTTTTGCAATATTGTTTCTGTTACTATTCAGCGGATTCATTATCAAAAAACCTTCCATGCCTGGTTGGTTAGGGTGGGGATTTTGGGTTTCCCCACTGACATATGGGGAGATAGGCCTCTCTGTGAACGAGTTTCTTTCTCCAAGATGGCAAACAATGCCATCAACGAACATTACTATCGGGCATGAAACCCTTGAAAGCCGTGGACTAAACTTTGATGGATATTTCTACTGGATATCACTTGGTGCCTTATTTGGATTCACAATGATTTTCAACATAGGATACATCTTGTCCTTGAGTTTCTTGAAGTCTCCCGGATCATCTCATGGTATCATTTCACATGAAAAGCTTGCCCAAATTCAAAGAACTGATGATTCCCTCGATGATGCCCAAGTGAAAGAAAAGTATAGAATTCATCCTTCTAAAACCACTGGTATTGGCAAGATGGTCTTACCGTTTACTCCATTAACACTGGTTTTCCAAGATGTGCAATACTATGTTATTCCTATGGAAACCAGGGAGCCAGGATTTAATCAGAAGAAACTTCAACTTCTAAGTGACATTACAGGGGCATTTAGACCTGGTGTTCTTACAGCATTGATGGGCGTCAGTGGCGCTGGGAAAACTACTCTTCTTGATGTTCTTGCAGGCAGAAAGACTACTGGCTGCATTGAAGGAGACATAAAGATTGGTGGATATCCCAAGGTTCAAGAAACATTTGCTAGGGTATTGGGTTACTGTGAGCAAACCGATGTTCATTCTCCACAAATCACTGTAGAAGAGTCTTTGATGTTTTCTGCTTGGCTGCGCCTGGCTTCTCAGATTGACTCAAAGACAAAAACTGAGTTTGTCAATGAAGTCCTTGAGACCATTGAGCTTGATGGAATAAAAGATGCCTTGGTTGGAATACCTGGTGTTAGTGGTCTATCAAATGAGCAGCGTAAGCGGCTTACAATTGCTGTCGAGCTTGTTTCAAATCCCTCCATAATCTTCATGGATGAACCTACAACTGGTTTGGATGCAAGAGCTGCTGCAATAGTCATGCGAGCAGTGAAGAATGTAGCTGATACGGGAAGAACAATTGTTTGCACCATCCACCAACCGAATATTGATATATTTGAAGCATTTGATGAGCTAATTCTTTTGAAAACTGGAGGGCGTATGATCTACTCAGGACAGGTGGGTCAGCACTCGAGTAGAGTTATCGAATATTTTCAGAGTATTCCTGGCGTTCAAAAGATCAAAAGTAACTACAATCCAGCTACATGGATGTTAGACATCACTTCTACATCAGCTGAAGCTGAACATGGTATTGATTTTGCCCAAATATACAGAGAATCTAGTTTATATGGGAATAATATAGAGCTTGCAAGACAGTTGAGTACTCCACCTCCTGGTTCCAGAGATCTGCATTTTGCTACACGCTTTTCACAAAATGGCTGGATGCAGTTCAAATCTTGCCTATGGAAGCAGCACTTGTCTTATTGGAGGAGTCCGTCATATAACTTGATGCGCATCATGCATACGGTTGTATCATCTTTAATTTTCGGGACATTGTATTGGAACCAAGGGAGGAAAATAACCGACCAGCAGAACTTATTCAATATACTTGGTTCTATGTATGCCGGTGTCATCTTCTTGGGCATAAATAACTGCGCAACTGTTCTGCAATATGTTGCCACAGAGAGAACTGTCATGTATCGTGAAAAATTTGTGGGGATGTATTCAACATTGGCCTTTTCGGTTGCACAGGTGGTGGTTGAACTTCCCTATATATTTATCCAGGCAGTCTTATTTATGATCATCACATATCCAATGATTGGGTATTATGCTTCAGCATATAAGATTTTCTGGTACTTCTATGCCTTATTTTGTTCACTGCTATACTACAATTACATGGGAATGATGCTCGTTTCGTTGACGCCAAACTTCATGGTAGCTGGAATTCTATCTTCAGTGTTCTACACAGTGTATAACCTGTTTGCTGCAAATTCGAAATGGTGGATTTGGTTGTATTACCTGACTCCCTCATCTTGGTCACTAAATGGTTTGCTCACTTCACAATATGGAGACATAAACAAGGAGATTATCATATTTGGGGAACCCAAAACAGTGTCTGCCTTCTTGAAAGACTACTTTGGGTTTCACCATGATCAGTTGGCTCTGGTGGCACTAGTTCTCATTGCATTTCCCATAGCTTTTGCATCTATTTTCGCCTACTGTATCGGACGGTTGAACTTCCAGAGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0009506 GO:0009719 GO:0009725 GO:0009733 GO:0009914 GO:0009926 GO:0009987 GO:0010033 GO:0010243 GO:0010817 GO:0014070 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022622 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071365 GO:0071366 GO:0071407 GO:0071417 GO:0071495 GO:0071944 GO:0080026 GO:0099402 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1478

Amino Acids

166.79

Weight (kDa)

7.88

Isoelectric Point (pI)

38.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_trans_N	PF14510	164 - 213	3.9e-06	ABC-transporter N-terminal
ABC_tran	PF00005	242 - 422	2.6e-18	ABC transporter
ABC2_membrane_7	PF19055	453 - 544	7.4e-07	ABC-2 type transporter
ABC2_membrane	PF01061	562 - 773	2.6e-46	ABC-2 type transporter
PDR_assoc	PF08370	778 - 840	4.7e-21	Plant PDR ABC transporter associated
ABC_tran	PF00005	913 - 1065	7.6e-21	ABC transporter
ABC2_membrane	PF01061	1211 - 1417	7.4e-46	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37280 AT2G37280 AT2G37280 AT2G37280 AT3G53480
fragaria_vesca	FvH4_6g08380 FvH4_6g08380 FvH4_6g08380
malus_domestica	MD04G1187600.v1.1
prunus_persica	Prupe.6G306100_v2.0.a1
pyrus_communis	pycom04g16590
rosa_chinensis	RchiOBHm_Chr3g0458321
rosa_laevigata	RLG00000025169
rosa_multiflora	Rmu_sc0007338.1_g000006
rosa_roxburghii	Rroxscaffold_6G00421170
rosa_rugosa	Rorug03G0025800 Rorug03G0025800 Rorug03G0025800
rosa_samantha	Rh3AG086600 Rh3BG089400 Rh3CG089800 Rh3DG090400
rosa_wichuraiana	Rw3G007350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	3366
Acc16I	TGCGCA	2 cut(s)	3698, 3841
Acc36I	ACCTGC	1 cut(s)	924
Acc65I	GGTACC	1 cut(s)	1548
AccB1I	GGYRCC	2 cut(s)	1548, 2429
AccB7I	CCANNNNNTGG	3 cut(s)	776, 3578, 4004
AciI	CCGC	6 cut(s)	415, 1214, 1552, 2169, 2217, 3130
AclI	AACGTT	1 cut(s)	344
AclWI	GGATC	4 cut(s)	1117, 1446, 1611, 2509
AcsI	RAATTY	7 cut(s)	1729, 1887, 2541, 2595, 3893, 4128, 4174
AcuI	CTGAAG	5 cut(s)	1292, 1340, 3501, 4002, 4122
AcyI	GRCGYC	2 cut(s)	2790, 4106
AdeI	CACNNNGTG	1 cut(s)	2429
AfaI	GTAC	4 cut(s)	1550, 1998, 3568, 4040
AfiI	CCNNNNNNNGG	7 cut(s)	776, 1105, 2025, 3194, 3578, 4004, 4218
AflII	CTTAAG	1 cut(s)	85
AhdI	GACNNNNNGTC	1 cut(s)	184
AhlI	ACTAGT	2 cut(s)	1342, 4357
AloI	GAACNNNNNNTCC	2 cut(s)	1454, 1486
Alw21I	GWGCWC	1 cut(s)	1383
Alw26I	GTCTC	8 cut(s)	328, 509, 1364, 1935, 2499, 2856, 3044, 4248
AlwI	GGATC	4 cut(s)	1117, 1446, 1611, 2509
AlwNI	CAGNNNCTG	3 cut(s)	38, 1315, 4301
Ama87I	CYCGRG	1 cut(s)	3376
AoxI	GGCC	4 cut(s)	696, 763, 2299, 3918
ApeKI	GCWGC	9 cut(s)	323, 1312, 2850, 2989, 3121, 3212, 3215, 3655, 4169
ApoI	RAATTY	7 cut(s)	1729, 1887, 2541, 2595, 3893, 4128, 4174
Asp700I	GAANNNNTTC	3 cut(s)	1713, 3396, 3782
Asp718I	GGTACC	1 cut(s)	1548
AspLEI	GCGC	4 cut(s)	2801, 2994, 3699, 3842
AspS9I	GGNCC	3 cut(s)	764, 1229, 1430
AsuC2I	CCSGG	1 cut(s)	2499
AsuHPI	GGTGA	6 cut(s)	392, 416, 577, 851, 1774, 4322
AsuII	TTCGAA	1 cut(s)	4178
AsuNHI	GCTAGC	1 cut(s)	865
AvaI	CYCGRG	1 cut(s)	3376
AvaII	GGWCC	2 cut(s)	1229, 1430
BaeI	ACNNNNGTAYC	2 cut(s)	3699, 3732
BanI	GGYRCC	2 cut(s)	1548, 2429
BanII	GRGCYC	1 cut(s)	1383
BauI	CACGAG	1 cut(s)	1877
BbsI	GAAGAC	3 cut(s)	451, 788, 1298
Bbv12I	GWGCWC	1 cut(s)	1383
BbvI	GCAGC	9 cut(s)	335, 1324, 2837, 2976, 3133, 3199, 3202, 3667, 4156
BceAI	ACGGC	3 cut(s)	368, 2090, 2370
BciVI	GTATCC	3 cut(s)	101, 2048, 2459
BclI	TGATCA	4 cut(s)	43, 1221, 3984, 4336
BcnI	CCSGG	1 cut(s)	2499
BcoDI	GTCTC	8 cut(s)	328, 509, 1364, 1935, 2499, 2856, 3044, 4248
BcuI	ACTAGT	2 cut(s)	1342, 4357
BfmI	CTRYAG	1 cut(s)	2958
BfoI	RGCGCY	1 cut(s)	2802
BfrI	CTTAAG	1 cut(s)	85
BfuAI	ACCTGC	1 cut(s)	924
BfuI	GTATCC	3 cut(s)	101, 2048, 2459
BglII	AGATCT	1 cut(s)	3589
BmcAI	AGTACT	1 cut(s)	3568
Bme18I	GGWCC	2 cut(s)	1229, 1430
BmeRI	GACNNNNNGTC	1 cut(s)	184
BmeT110I	CYCGRG	1 cut(s)	3376
BmgT120I	GGNCC	3 cut(s)	764, 1229, 1430
BmtI	GCTAGC	1 cut(s)	869
BpiI	GAAGAC	3 cut(s)	451, 788, 1298
BplI	GAGNNNNNCTC	2 cut(s)	1505, 1537
BpmI	CTGGAG	5 cut(s)	98, 235, 1085, 2069, 3357
Bpu14I	TTCGAA	1 cut(s)	4178
BpuEI	CTTGAG	3 cut(s)	812, 2500, 3068
BpuMI	CCSGG	1 cut(s)	2499
BsaAI	YACGTR	1 cut(s)	512
BsaBI	GATNNNNATC	3 cut(s)	1602, 1766, 3698
BsaHI	GRCGYC	2 cut(s)	2790, 4106
BsaI	GGTCTC	2 cut(s)	1935, 3044
BsaWI	WCCGGW	1 cut(s)	1366
BsaXI	ACNNNNNCTCC	4 cut(s)	554, 584, 3559, 3589
Bsc4I	CCNNNNNNNGG	7 cut(s)	776, 1105, 2025, 3194, 3578, 4004, 4218
Bse118I	RCCGGY	2 cut(s)	2180, 3809
Bse1I	ACTGG	9 cut(s)	115, 252, 2086, 2420, 2620, 2661, 2851, 3199, 3340
Bse3DI	GCAATG	3 cut(s)	1770, 2178, 4365
Bse8I	GATNNNNATC	3 cut(s)	1602, 1766, 3698
BseJI	GATNNNNATC	3 cut(s)	1602, 1766, 3698
BseLI	CCNNNNNNNGG	7 cut(s)	776, 1105, 2025, 3194, 3578, 4004, 4218
BseMI	GCAATG	3 cut(s)	1770, 2178, 4365
BseNI	ACTGG	9 cut(s)	115, 252, 2086, 2420, 2620, 2661, 2851, 3199, 3340
BseRI	GAGGAG	2 cut(s)	101, 3688
BseXI	GCAGC	9 cut(s)	335, 1324, 2837, 2976, 3133, 3199, 3202, 3667, 4156
BseYI	CCCAGC	1 cut(s)	2801
BsgI	GTGCAG	1 cut(s)	335
BshFI	GGCC	4 cut(s)	698, 765, 2301, 3920
BshNI	GGYRCC	2 cut(s)	1548, 2429
BsiHKAI	GWGCWC	1 cut(s)	1383
BsiHKCI	CYCGRG	1 cut(s)	3376
BsiSI	CCGG	5 cut(s)	1367, 1979, 2181, 2499, 3810
BslFI	GGGAC	2 cut(s)	1215, 3748
BslI	CCNNNNNNNGG	7 cut(s)	776, 1105, 2025, 3194, 3578, 4004, 4218
BsmAI	GTCTC	8 cut(s)	328, 509, 1364, 1935, 2499, 2856, 3044, 4248
BsmBI	CGTCTC	1 cut(s)	509
BsmFI	GGGAC	2 cut(s)	1215, 3748
BsnI	GGCC	4 cut(s)	698, 765, 2301, 3920
Bso31I	GGTCTC	2 cut(s)	1935, 3044
BsoBI	CYCGRG	1 cut(s)	3376
Bsp119I	TTCGAA	1 cut(s)	4178
Bsp1286I	GDGCHC	1 cut(s)	1383
Bsp19I	CCATGG	1 cut(s)	2160
BspACI	CCGC	6 cut(s)	415, 1214, 1552, 2169, 2217, 3130
BspANI	GGCC	4 cut(s)	698, 765, 2301, 3920
BspHI	TCATGA	1 cut(s)	1719
BspMI	ACCTGC	1 cut(s)	924
BspOI	GCTAGC	1 cut(s)	869
BspPI	GGATC	4 cut(s)	1117, 1446, 1611, 2509
BspQI	GCTCTTC	1 cut(s)	27
BspT104I	TTCGAA	1 cut(s)	4178
BspT107I	GGYRCC	2 cut(s)	1548, 2429
BspTI	CTTAAG	1 cut(s)	85
BspTNI	GGTCTC	2 cut(s)	1935, 3044
BsrDI	GCAATG	3 cut(s)	1770, 2178, 4365
BsrFI	RCCGGY	2 cut(s)	2180, 3809
BsrI	ACTGG	9 cut(s)	115, 252, 2086, 2420, 2620, 2661, 2851, 3199, 3340
BssAI	RCCGGY	2 cut(s)	2180, 3809
BssNI	GRCGYC	2 cut(s)	2790, 4106
BssSI	CACGAG	1 cut(s)	1877
BssT1I	CCWWGG	6 cut(s)	1081, 1126, 2160, 2886, 3081, 3751
Bst2BI	CACGAG	1 cut(s)	1877
Bst6I	CTCTTC	7 cut(s)	27, 201, 1193, 1356, 1718, 2820, 2958
BstACI	GRCGYC	2 cut(s)	2790, 4106
BstAFI	CTTAAG	1 cut(s)	85
BstAPI	GCANNNNNTGC	3 cut(s)	1318, 2341, 3212
BstBAI	YACGTR	1 cut(s)	512
BstBI	TTCGAA	1 cut(s)	4178
BstC8I	GCNNGC	7 cut(s)	867, 964, 1362, 2535, 2833, 3231, 3552
BstDSI	CCRYGG	3 cut(s)	1433, 2160, 2386
BstH2I	RGCGCY	1 cut(s)	2802
BstHHI	GCGC	4 cut(s)	2801, 2994, 3699, 3842
BstMAI	GTCTC	8 cut(s)	328, 509, 1364, 1935, 2499, 2856, 3044, 4248
BstNSI	RCATGY	1 cut(s)	458
BstSFI	CTRYAG	1 cut(s)	2958
BstSNI	TACGTA	1 cut(s)	512
BstV1I	GCAGC	9 cut(s)	335, 1324, 2837, 2976, 3133, 3199, 3202, 3667, 4156
BstV2I	GAAGAC	3 cut(s)	451, 788, 1298
BstX2I	RGATCY	3 cut(s)	1122, 1603, 3589
BstXI	CCANNNNNNTGG	2 cut(s)	633, 3450
BstYI	RGATCY	3 cut(s)	1122, 1603, 3589
BsuI	GTATCC	3 cut(s)	101, 2048, 2459
BsuRI	GGCC	4 cut(s)	698, 765, 2301, 3920
BtgI	CCRYGG	3 cut(s)	1433, 2160, 2386
BtsI	GCAGTG	5 cut(s)	323, 600, 1281, 3240, 4061
BveI	ACCTGC	1 cut(s)	924
Cac8I	GCNNGC	7 cut(s)	867, 964, 1362, 2535, 2833, 3231, 3552
CaiI	CAGNNNCTG	3 cut(s)	38, 1315, 4301
CciI	TCATGA	1 cut(s)	1719
CfoI	GCGC	4 cut(s)	2801, 2994, 3699, 3842
Cfr10I	RCCGGY	2 cut(s)	2180, 3809
Cfr13I	GGNCC	3 cut(s)	764, 1229, 1430
CseI	GACGC	2 cut(s)	2779, 4114
CsiI	ACCWGGT	2 cut(s)	2764, 3094
Csp6I	GTAC	4 cut(s)	1549, 1997, 3567, 4039
CspCI	CAANNNNNGTGG	2 cut(s)	2602, 2637
CviQI	GTAC	4 cut(s)	1549, 1997, 3567, 4039
DraI	TTTAAA	1 cut(s)	795
DraIII	CACNNNGTG	1 cut(s)	2429
DrdI	GACNNNNNNGTC	1 cut(s)	3366
DriI	GACNNNNNGTC	1 cut(s)	184
DseDI	GACNNNNNNGTC	1 cut(s)	3366
Eam1104I	CTCTTC	7 cut(s)	27, 201, 1193, 1356, 1718, 2820, 2958
Eam1105I	GACNNNNNGTC	1 cut(s)	184
EarI	CTCTTC	7 cut(s)	27, 201, 1193, 1356, 1718, 2820, 2958
Ecl136II	GAGCTC	1 cut(s)	1381
Eco105I	TACGTA	1 cut(s)	512
Eco130I	CCWWGG	6 cut(s)	1081, 1126, 2160, 2886, 3081, 3751
Eco147I	AGGCCT	1 cut(s)	2301
Eco24I	GRGCYC	1 cut(s)	1383
Eco31I	GGTCTC	2 cut(s)	1935, 3044
Eco32I	GATATC	2 cut(s)	2421, 2882
Eco47I	GGWCC	2 cut(s)	1229, 1430
Eco53kI	GAGCTC	1 cut(s)	1381
Eco57I	CTGAAG	5 cut(s)	1292, 1340, 3501, 4002, 4122
Eco88I	CYCGRG	1 cut(s)	3376
EcoICRI	GAGCTC	1 cut(s)	1381
EcoRI	GAATTC	4 cut(s)	1729, 1887, 2595, 4128
EcoRV	GATATC	2 cut(s)	2421, 2882
EcoT14I	CCWWGG	6 cut(s)	1081, 1126, 2160, 2886, 3081, 3751
EcoT22I	ATGCAT	2 cut(s)	1576, 3708
EcoT38I	GRGCYC	1 cut(s)	1383
ErhI	CCWWGG	6 cut(s)	1081, 1126, 2160, 2886, 3081, 3751
Esp3I	CGTCTC	1 cut(s)	509
FaqI	GGGAC	2 cut(s)	1215, 3748
FauI	CCCGC	1 cut(s)	408
FauNDI	CATATG	1 cut(s)	2287
FbaI	TGATCA	4 cut(s)	43, 1221, 3984, 4336
FriOI	GRGCYC	1 cut(s)	1383
FspAI	RTGCGCAY	1 cut(s)	3698
FspI	TGCGCA	2 cut(s)	3698, 3841
GlaI	GCGC	4 cut(s)	2800, 2993, 3698, 3841
GsaI	CCCAGC	1 cut(s)	2805
GsuI	CTGGAG	5 cut(s)	98, 235, 1085, 2069, 3357
HaeII	RGCGCY	1 cut(s)	2802
HaeIII	GGCC	4 cut(s)	698, 765, 2301, 3920
HapII	CCGG	5 cut(s)	1367, 1979, 2181, 2499, 3810
HgaI	GACGC	2 cut(s)	2779, 4114
HhaI	GCGC	4 cut(s)	2801, 2994, 3699, 3842
Hin1I	GRCGYC	2 cut(s)	2790, 4106
Hin6I	GCGC	4 cut(s)	2799, 2992, 3697, 3840
HinP1I	GCGC	4 cut(s)	2799, 2992, 3697, 3840
HincII	GTYRAC	3 cut(s)	750, 1206, 4104
HindII	GTYRAC	3 cut(s)	750, 1206, 4104
HindIII	AAGCTT	6 cut(s)	82, 220, 434, 1239, 1625, 2531
HpaI	GTTAAC	1 cut(s)	750
HpaII	CCGG	5 cut(s)	1367, 1979, 2181, 2499, 3810
HphI	GGTGA	6 cut(s)	392, 416, 577, 851, 1774, 4322
Hpy166II	GTNNAC	8 cut(s)	750, 1206, 1433, 2311, 2390, 2643, 4061, 4104
Hpy8I	GTNNAC	8 cut(s)	750, 1206, 1433, 2311, 2390, 2643, 4061, 4104
HpyCH4IV	ACGT	2 cut(s)	344, 511
HpySE526I	ACGT	2 cut(s)	344, 511
Hsp92I	GRCGYC	2 cut(s)	2790, 4106
HspAI	GCGC	4 cut(s)	2799, 2992, 3697, 3840
KpnI	GGTACC	1 cut(s)	1552
Ksp22I	TGATCA	4 cut(s)	43, 1221, 3984, 4336
KspAI	GTTAAC	1 cut(s)	750
LguI	GCTCTTC	1 cut(s)	27
LmnI	GCTCC	2 cut(s)	440, 2704
Lsp1109I	GCAGC	9 cut(s)	335, 1324, 2837, 2976, 3133, 3199, 3202, 3667, 4156
MabI	ACCWGGT	2 cut(s)	2764, 3094
MaeII	ACGT	2 cut(s)	344, 511
MaeIII	GTNAC	9 cut(s)	136, 245, 427, 844, 2205, 2741, 2918, 3431, 4221
MfeI	CAATTG	2 cut(s)	3138, 3264
MflI	RGATCY	3 cut(s)	1122, 1603, 3589
MhlI	GDGCHC	1 cut(s)	1383
MlyI	GAGTC	8 cut(s)	76, 194, 250, 1798, 2975, 3005, 3685, 4201
MmeI	TCCRAC	4 cut(s)	183, 520, 1138, 3067
Mph1103I	ATGCAT	2 cut(s)	1576, 3708
MroXI	GAANNNNTTC	3 cut(s)	1713, 3396, 3782
MslI	CAYNNNNRTG	2 cut(s)	1569, 4085
MspA1I	CMGCKG	5 cut(s)	57, 1214, 1315, 2217, 3479
MspCI	CTTAAG	1 cut(s)	85
MspI	CCGG	5 cut(s)	1367, 1979, 2181, 2499, 3810
MunI	CAATTG	2 cut(s)	3138, 3264
NciI	CCSGG	1 cut(s)	2499
NcoI	CCATGG	1 cut(s)	2160
NdeI	CATATG	1 cut(s)	2287
NheI	GCTAGC	1 cut(s)	865
NmeAIII	GCCGAG	1 cut(s)	1010
NmuCI	GTSAC	3 cut(s)	136, 2741, 4221
NsbI	TGCGCA	2 cut(s)	3698, 3841
NsiI	ATGCAT	2 cut(s)	1576, 3708
NspI	RCATGY	1 cut(s)	458
NspV	TTCGAA	1 cut(s)	4178
PaeR7I	CTCGAG	1 cut(s)	3376
PagI	TCATGA	1 cut(s)	1719
PceI	AGGCCT	1 cut(s)	2301
PciSI	GCTCTTC	1 cut(s)	27
PcsI	WCGNNNNNNNCGW	1 cut(s)	508
PdmI	GAANNNNTTC	3 cut(s)	1713, 3396, 3782
PfeI	GAWTC	7 cut(s)	35, 577, 1331, 2220, 2442, 2558, 3521
PflMI	CCANNNNNTGG	3 cut(s)	776, 3578, 4004
PfoI	TCCNGGA	1 cut(s)	2497
PleI	GAGTC	8 cut(s)	75, 193, 249, 1798, 2974, 3005, 3684, 4201
PpsI	GAGTC	8 cut(s)	75, 193, 249, 1798, 2974, 3005, 3684, 4201
Ppu21I	YACGTR	1 cut(s)	512
Psp124BI	GAGCTC	1 cut(s)	1383
Psp1406I	AACGTT	1 cut(s)	344
PspFI	CCCAGC	1 cut(s)	2801
PspPI	GGNCC	3 cut(s)	764, 1229, 1430
PspXI	VCTCGAGB	1 cut(s)	3376
PstNI	CAGNNNCTG	3 cut(s)	38, 1315, 4301
PsuI	RGATCY	3 cut(s)	1122, 1603, 3589
PvuII	CAGCTG	3 cut(s)	57, 1315, 3479
RsaI	GTAC	4 cut(s)	1550, 1998, 3568, 4040
RsaNI	GTAC	4 cut(s)	1549, 1997, 3567, 4039
RseI	CAYNNNNRTG	2 cut(s)	1569, 4085
SacI	GAGCTC	1 cut(s)	1383
SapI	GCTCTTC	1 cut(s)	27
Sau96I	GGNCC	3 cut(s)	764, 1229, 1430
ScaI	AGTACT	1 cut(s)	3568
SchI	GAGTC	8 cut(s)	76, 194, 250, 1798, 2975, 3005, 3685, 4201
SduI	GDGCHC	1 cut(s)	1383
SexAI	ACCWGGT	2 cut(s)	2764, 3094
SfcI	CTRYAG	1 cut(s)	2958
Sfr274I	CTCGAG	1 cut(s)	3376
SfuI	TTCGAA	1 cut(s)	4178
SinI	GGWCC	2 cut(s)	1229, 1430
SlaI	CTCGAG	1 cut(s)	3376
SmiMI	CAYNNNNRTG	2 cut(s)	1569, 4085
SmlI	CTYRAG	5 cut(s)	85, 827, 2479, 3047, 3376
SmoI	CTYRAG	5 cut(s)	85, 827, 2479, 3047, 3376
SnaBI	TACGTA	1 cut(s)	512
SpeI	ACTAGT	2 cut(s)	1342, 4357
SseBI	AGGCCT	1 cut(s)	2301
SsiI	CCGC	6 cut(s)	415, 1214, 1552, 2169, 2217, 3130
SspI	AATATT	3 cut(s)	2196, 3292, 3395
SstI	GAGCTC	1 cut(s)	1383
StuI	AGGCCT	1 cut(s)	2301
StyI	CCWWGG	6 cut(s)	1081, 1126, 2160, 2886, 3081, 3751
TaiI	ACGT	2 cut(s)	347, 514
TaqI	TCGA	8 cut(s)	486, 588, 912, 2565, 3147, 3377, 3390, 4178
TatI	WGTACW	1 cut(s)	3566
TauI	GCSGC	2 cut(s)	2171, 3133
TfiI	GAWTC	7 cut(s)	35, 577, 1331, 2220, 2442, 2558, 3521
TseFI	GTSAC	3 cut(s)	136, 2741, 4221
TseI	GCWGC	9 cut(s)	323, 1312, 2850, 2989, 3121, 3212, 3215, 3655, 4169
Tsp45I	GTSAC	3 cut(s)	136, 2741, 4221
TspGWI	ACGGA	2 cut(s)	1121, 3669
Van91I	CCANNNNNTGG	3 cut(s)	776, 3578, 4004
Vha464I	CTTAAG	1 cut(s)	85
VpaK11BI	GGWCC	2 cut(s)	1229, 1430
XapI	RAATTY	7 cut(s)	1729, 1887, 2541, 2595, 3893, 4128, 4174
XbaI	TCTAGA	1 cut(s)	1270
XceI	RCATGY	1 cut(s)	458
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1876, 3175
XhoI	CTCGAG	1 cut(s)	3376
XmnI	GAANNNNTTC	3 cut(s)	1713, 3396, 3782
ZrmI	AGTACT	1 cut(s)	3568
Zsp2I	ATGCAT	2 cut(s)	1576, 3708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.