Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0008205

Physical Location & Seq

Genomic Coordinates Reverse (-)

6948032 .. 6950201

Gene Structure 2170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG089400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGATCATTGGTCCCACAAAAGCTTTGTTCATGGATGAGATAACAAATGGTCTAGACAGTTCCACTGCATTCCAAATTGTTGCTTGTCTTCAGCAGCTGGTGCATATAACAGATTCTACTTTACTAGTTTCTCTTCTTCAGCCAGCACCGGAGACGTTTGAGCTCTTTGATGACCTTATTTTAATGTCAGAAGGGAAGATTGTTTATCATGGTCCACGGGATCATGTCTTGGAGTTTTTTGAGGATTGTGGGTTCAAGTGTCCTGAGAGGAAAGGGCTTATCATCATTGCATTTATCACCATGACTGTATTTCTGAGGACTCGAATGGATATTGATGTTCTTCATGCAAACTACTACATGGGTTCCCTATTCTTTGCTCTTACCATACTTCTCGTGGATGGAATTCCTGAGTTTCCTGAGTTCCAAAAGTTCATCCTCCAGTTCTTTCTACTTTTTGCCGTTCATTTAACATCAATATCCATGTTTCGCTTCCTGGCATCATTCTTTCAGACCATGGTTGCCGCAATGACAGCCGGTAGTTTTGCAATGTTGTTTCTGTTGCTATTCAGCGGATTCATTATCAAAAAACCTTCCATGCCTGGTTGGTTAGAGTGGGGATTTTGGGTTTCCCCACTGACATATGGGGAGATAGGCCTCTCTGTGAACGAGTTTCTTTCTCCAAGATGGCAAACAATGCCATCAACGAACATTACTATTGGGCATGAAACCCTTGAAAGCCGTGGACTAAACTTTGATGGATATTTCTACTGGATATCACTTGGTGCCTTATTTGGATTCACAATGATTTTCAACATAGGATACATCTTGTCCTTGAGTTTCTTGAAGTCTCCCGGATCATCTCATGGTATCATTTCACATGAAAAGCTTGCCCAAATTCAAAGAACTGATGATTCCCTCGATGATGCCCAAGTGAAAGAAAAGTCTAGAATTCATCCTTCTAAAACCACTGGTATTGGTTACAAATTTGACAATAAGATTTTTGTTCCTTTATTTGTCTCCTATGATTCCACAGATCAAATTTTACTGTTGCCTTTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0009506 GO:0009719 GO:0009725 GO:0009733 GO:0009914 GO:0009926 GO:0009987 GO:0010033 GO:0010243 GO:0010817 GO:0014070 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022622 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071365 GO:0071366 GO:0071407 GO:0071417 GO:0071495 GO:0071944 GO:0080026 GO:0099402 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

353

Amino Acids

40.04

Weight (kDa)

5.23

Isoelectric Point (pI)

42.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane_7	PF19055	47 - 90	4.6e-06	ABC-2 type transporter
ABC2_membrane	PF01061	140 - 224	1.4e-18	ABC-2 type transporter
PDR_assoc	PF08370	229 - 291	7.1e-22	Plant PDR ABC transporter associated

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37280 AT2G37280 AT2G37280 AT2G37280 AT3G53480
fragaria_vesca	FvH4_6g08380 FvH4_6g08380 FvH4_6g08380
malus_domestica	MD04G1187600.v1.1
prunus_persica	Prupe.6G306100_v2.0.a1
pyrus_communis	pycom04g16590
rosa_chinensis	RchiOBHm_Chr3g0458321
rosa_laevigata	RLG00000025169
rosa_multiflora	Rmu_sc0007338.1_g000006
rosa_roxburghii	Rroxscaffold_6G00421170
rosa_rugosa	Rorug03G0025800 Rorug03G0025800 Rorug03G0025800
rosa_samantha	Rh3AG086600 Rh3BG089400 Rh3CG089800 Rh3DG090400
rosa_wichuraiana	Rw3G007350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	782
AciI	CCGC	2 cut(s)	522, 570
AclWI	GGATC	2 cut(s)	228, 862
AcsI	RAATTY	5 cut(s)	402, 894, 948, 983, 1038
AcuI	CTGAAG	2 cut(s)	74, 122
AdeI	CACNNNGTG	1 cut(s)	782
AgsI	TTSAA	5 cut(s)	256, 734, 811, 844, 899
AhlI	ACTAGT	1 cut(s)	124
AjnI	CCWGG	2 cut(s)	492, 598
AloI	GAACNNNNNNTCC	2 cut(s)	236, 268
AluBI	AGCT	4 cut(s)	23, 97, 163, 886
AluI	AGCT	4 cut(s)	23, 97, 163, 886
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	3 cut(s)	146, 852, 1021
AlwI	GGATC	2 cut(s)	228, 862
AlwNI	CAGNNNCTG	1 cut(s)	97
AoxI	GGCC	1 cut(s)	652
ApeKI	GCWGC	1 cut(s)	94
ApoI	RAATTY	5 cut(s)	402, 894, 948, 983, 1038
AspS9I	GGNCC	2 cut(s)	11, 212
AsuC2I	CCSGG	1 cut(s)	852
AsuHPI	GGTGA	1 cut(s)	289
AvaII	GGWCC	2 cut(s)	11, 212
BanI	GGYRCC	1 cut(s)	782
BanII	GRGCYC	1 cut(s)	165
BauI	CACGAG	1 cut(s)	392
BbsI	GAAGAC	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	4 cut(s)	392, 678, 706, 749
BceAI	ACGGC	2 cut(s)	443, 723
BciT130I	CCWGG	2 cut(s)	494, 600
BciVI	GTATCC	1 cut(s)	812
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	852
BcoDI	GTCTC	3 cut(s)	146, 852, 1021
BcuI	ACTAGT	1 cut(s)	124
BfaI	CTAG	3 cut(s)	53, 125, 945
BfuI	GTATCC	1 cut(s)	812
BisI	GCNGC	2 cut(s)	95, 522
BlsI	GCNGC	2 cut(s)	96, 523
Bme1390I	CCNGG	3 cut(s)	494, 600, 852
Bme18I	GGWCC	2 cut(s)	11, 212
BmgT120I	GGNCC	2 cut(s)	11, 212
BmiI	GGNNCC	3 cut(s)	13, 364, 784
BmrFI	CCNGG	3 cut(s)	494, 600, 852
BmsI	GCATC	2 cut(s)	506, 913
BpiI	GAAGAC	1 cut(s)	80
BpmI	CTGGAG	1 cut(s)	422
BpuEI	CTTGAG	1 cut(s)	853
BpuMI	CCSGG	1 cut(s)	852
BsaJI	CCNNGG	3 cut(s)	215, 513, 739
BsaWI	WCCGGW	1 cut(s)	148
Bse118I	RCCGGY	1 cut(s)	533
Bse1I	ACTGG	3 cut(s)	439, 773, 973
Bse3DI	GCAATG	3 cut(s)	285, 531, 552
BseBI	CCWGG	2 cut(s)	494, 600
BseDI	CCNNGG	3 cut(s)	215, 513, 739
BseGI	GGATG	4 cut(s)	40, 403, 432, 952
BseMI	GCAATG	3 cut(s)	285, 531, 552
BseMII	CTCAG	4 cut(s)	255, 305, 399, 408
BseNI	ACTGG	3 cut(s)	439, 773, 973
BseXI	GCAGC	1 cut(s)	106
BshFI	GGCC	1 cut(s)	654
BshNI	GGYRCC	1 cut(s)	782
BsiHKAI	GWGCWC	1 cut(s)	165
BsiSI	CCGG	3 cut(s)	149, 534, 852
BsmAI	GTCTC	3 cut(s)	146, 852, 1021
BsmBI	CGTCTC	1 cut(s)	146
BsmI	GAATGC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	654
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	4 cut(s)	3, 220, 854, 1033
Bsp19I	CCATGG	1 cut(s)	513
BspACI	CCGC	2 cut(s)	522, 570
BspANI	GGCC	1 cut(s)	654
BspCNI	CTCAG	4 cut(s)	256, 306, 400, 409
BspLI	GGNNCC	3 cut(s)	13, 364, 784
BspPI	GGATC	2 cut(s)	228, 862
BspT107I	GGYRCC	1 cut(s)	782
BsrDI	GCAATG	3 cut(s)	285, 531, 552
BsrFI	RCCGGY	1 cut(s)	533
BsrI	ACTGG	3 cut(s)	439, 773, 973
BssAI	RCCGGY	1 cut(s)	533
BssECI	CCNNGG	3 cut(s)	215, 513, 739
BssMI	GATC	4 cut(s)	3, 220, 854, 1033
BssSI	CACGAG	1 cut(s)	392
BssT1I	CCWWGG	1 cut(s)	513
Bst2BI	CACGAG	1 cut(s)	392
Bst2UI	CCWGG	2 cut(s)	494, 600
Bst4CI	ACNGT	3 cut(s)	59, 307, 1047
Bst6I	CTCTTC	1 cut(s)	138
BstAPI	GCANNNNNTGC	2 cut(s)	100, 694
BstC8I	GCNNGC	2 cut(s)	144, 888
BstDEI	CTNAG	4 cut(s)	264, 314, 408, 417
BstDSI	CCRYGG	3 cut(s)	215, 513, 739
BstF5I	GGATG	4 cut(s)	40, 403, 432, 952
BstKTI	GATC	4 cut(s)	6, 223, 857, 1036
BstMAI	GTCTC	3 cut(s)	146, 852, 1021
BstMBI	GATC	4 cut(s)	3, 220, 854, 1033
BstMWI	GCNNNNNNNGC	3 cut(s)	100, 530, 694
BstNI	CCWGG	2 cut(s)	494, 600
BstSCI	CCNGG	3 cut(s)	492, 598, 850
BstV1I	GCAGC	1 cut(s)	106
BstV2I	GAAGAC	1 cut(s)	80
BsuI	GTATCC	1 cut(s)	812
BsuRI	GGCC	1 cut(s)	654
BtgI	CCRYGG	3 cut(s)	215, 513, 739
BtsCI	GGATG	4 cut(s)	40, 403, 432, 952
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	3 cut(s)	63, 632, 966
Cac8I	GCNNGC	2 cut(s)	144, 888
CaiI	CAGNNNCTG	1 cut(s)	97
Cfr10I	RCCGGY	1 cut(s)	533
Cfr13I	GGNCC	2 cut(s)	11, 212
CspCI	CAANNNNNGTGG	2 cut(s)	955, 990
CviJI	RGCY	9 cut(s)	23, 97, 142, 163, 277, 533, 654, 738, 886
CviKI_1	RGCY	9 cut(s)	23, 97, 142, 163, 277, 533, 654, 738, 886
DdeI	CTNAG	4 cut(s)	264, 314, 408, 417
DpnI	GATC	4 cut(s)	5, 222, 856, 1035
DpnII	GATC	4 cut(s)	3, 220, 854, 1033
DraIII	CACNNNGTG	1 cut(s)	782
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Ecl136II	GAGCTC	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	513
Eco147I	AGGCCT	1 cut(s)	654
Eco24I	GRGCYC	1 cut(s)	165
Eco32I	GATATC	1 cut(s)	774
Eco47I	GGWCC	2 cut(s)	11, 212
Eco53kI	GAGCTC	1 cut(s)	163
Eco57I	CTGAAG	2 cut(s)	74, 122
EcoICRI	GAGCTC	1 cut(s)	163
EcoRI	GAATTC	2 cut(s)	402, 948
EcoRII	CCWGG	2 cut(s)	492, 598
EcoRV	GATATC	1 cut(s)	774
EcoT14I	CCWWGG	1 cut(s)	513
EcoT38I	GRGCYC	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	513
Esp3I	CGTCTC	1 cut(s)	146
FauNDI	CATATG	1 cut(s)	640
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	95, 522
FokI	GGATG	4 cut(s)	47, 410, 419, 939
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	2 cut(s)	95, 522
FspBI	CTAG	3 cut(s)	53, 125, 945
GluI	GCNGC	2 cut(s)	95, 522
GsuI	CTGGAG	1 cut(s)	422
HaeIII	GGCC	1 cut(s)	654
HapII	CCGG	3 cut(s)	149, 534, 852
HindIII	AAGCTT	2 cut(s)	21, 884
HinfI	GANTC	6 cut(s)	113, 319, 573, 795, 911, 1025
HpaII	CCGG	3 cut(s)	149, 534, 852
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	3 cut(s)	215, 664, 743
Hpy188I	TCNGA	3 cut(s)	190, 315, 510
Hpy188III	TCNNGA	6 cut(s)	53, 263, 407, 416, 841, 945
Hpy8I	GTNNAC	3 cut(s)	215, 664, 743
HpyAV	CCTTC	3 cut(s)	185, 600, 966
HpyCH4III	ACNGT	3 cut(s)	59, 307, 1047
HpyCH4IV	ACGT	1 cut(s)	155
HpyCH4V	TGCA	5 cut(s)	68, 103, 290, 347, 545
HpyF10VI	GCNNNNNNNGC	3 cut(s)	100, 530, 694
HpyF3I	CTNAG	4 cut(s)	264, 314, 408, 417
HpySE526I	ACGT	1 cut(s)	155
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 220, 854, 1033
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	2 cut(s)	506, 913
MaeI	CTAG	3 cut(s)	53, 125, 945
MaeII	ACGT	1 cut(s)	155
MaeIII	GTNAC	1 cut(s)	977
MalI	GATC	4 cut(s)	5, 222, 856, 1035
MboI	GATC	4 cut(s)	3, 220, 854, 1033
MboII	GAAGA	5 cut(s)	80, 125, 128, 208, 332
MhlI	GDGCHC	1 cut(s)	165
MluCI	AATT	6 cut(s)	75, 402, 894, 948, 983, 1038
MlyI	GAGTC	1 cut(s)	313
MnlI	CCTC	6 cut(s)	235, 261, 309, 446, 665, 926
MseI	TTAA	3 cut(s)	182, 467, 1060
MspA1I	CMGCKG	2 cut(s)	97, 570
MspI	CCGG	3 cut(s)	149, 534, 852
MspR9I	CCNGG	3 cut(s)	494, 600, 852
Mva1269I	GAATGC	1 cut(s)	68
MvaI	CCWGG	2 cut(s)	494, 600
MwoI	GCNNNNNNNGC	3 cut(s)	100, 530, 694
NciI	CCSGG	1 cut(s)	852
NcoI	CCATGG	1 cut(s)	513
NdeI	CATATG	1 cut(s)	640
NdeII	GATC	4 cut(s)	3, 220, 854, 1033
NlaIV	GGNNCC	3 cut(s)	13, 364, 784
PceI	AGGCCT	1 cut(s)	654
PctI	GAATGC	1 cut(s)	68
PfeI	GAWTC	5 cut(s)	113, 573, 795, 911, 1025
PfoI	TCCNGGA	1 cut(s)	850
PkrI	GCNGC	2 cut(s)	96, 523
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
Psp124BI	GAGCTC	1 cut(s)	165
Psp6I	CCWGG	2 cut(s)	492, 598
PspGI	CCWGG	2 cut(s)	492, 598
PspN4I	GGNNCC	3 cut(s)	13, 364, 784
PspPI	GGNCC	2 cut(s)	11, 212
PstNI	CAGNNNCTG	1 cut(s)	97
PvuII	CAGCTG	1 cut(s)	97
SacI	GAGCTC	1 cut(s)	165
SaqAI	TTAA	3 cut(s)	182, 467, 1060
SatI	GCNGC	2 cut(s)	95, 522
Sau3AI	GATC	4 cut(s)	3, 220, 854, 1033
Sau96I	GGNCC	2 cut(s)	11, 212
SchI	GAGTC	1 cut(s)	313
ScrFI	CCNGG	3 cut(s)	494, 600, 852
SduI	GDGCHC	1 cut(s)	165
SetI	ASST	7 cut(s)	25, 99, 158, 165, 177, 592, 888
SfaNI	GCATC	2 cut(s)	506, 913
SinI	GGWCC	2 cut(s)	11, 212
SmlI	CTYRAG	1 cut(s)	832
SmoI	CTYRAG	1 cut(s)	832
SpeI	ACTAGT	1 cut(s)	124
Sse9I	AATT	6 cut(s)	75, 402, 894, 948, 983, 1038
SseBI	AGGCCT	1 cut(s)	654
SsiI	CCGC	2 cut(s)	522, 570
SspMI	CTAG	3 cut(s)	53, 125, 945
SstI	GAGCTC	1 cut(s)	165
StuI	AGGCCT	1 cut(s)	654
StyD4I	CCNGG	3 cut(s)	492, 598, 850
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	3 cut(s)	59, 307, 1047
TaiI	ACGT	1 cut(s)	158
TaqI	TCGA	2 cut(s)	322, 918
TasI	AATT	6 cut(s)	75, 402, 894, 948, 983, 1038
TauI	GCSGC	1 cut(s)	524
TfiI	GAWTC	5 cut(s)	113, 573, 795, 911, 1025
Tru1I	TTAA	3 cut(s)	182, 467, 1060
Tru9I	TTAA	3 cut(s)	182, 467, 1060
TscAI	CASTG	3 cut(s)	70, 639, 973
TseI	GCWGC	1 cut(s)	94
TspDTI	ATGAA	8 cut(s)	19, 332, 421, 452, 565, 738, 894, 941
TspRI	CASTG	3 cut(s)	70, 639, 973
VpaK11BI	GGWCC	2 cut(s)	11, 212
XapI	RAATTY	5 cut(s)	402, 894, 948, 983, 1038
XbaI	TCTAGA	2 cut(s)	52, 944
XcmI	CCANNNNNNNNNTGG	1 cut(s)	391
XspI	CTAG	3 cut(s)	53, 125, 945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.