Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007377.1

Orthogroup ID

OG0007964

Physical Location & Seq

Genomic Coordinates Forward (+)

23641 .. 28117

Gene Structure 4477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

atggccctctcttccgcattttggcgcctaaatctcctctcaaaaccctcagtttctctcagagctctaaaacccttgaagcccaaaccaaggcccatgtcctcgcttcccatttcttctaaatcaaattcctccaacttttccgcatcaaagaatccaacttttctagacccaaaaacacgaactccgtatccccaacatgatcttattgttctgggcatcgaaaccagctgcgacgacaccgccgctgccgtcgtgaaaagcaacggtgaaattctcagccaagttatttcttctcaggcagatttgcttgctcaatatggaggtgttgctcccaaaatggcagaagaagtgcacttgcaagtgattgatcgggttgtgcaagaagcgctcaacaaagctaatttaaccgagagagatttgtctgcagttgctgttaccattggtcctggtttaagcctttgtcttcgtgttggtgtgcggaaagctcgtaaaattgctggtacttttagcttaccaattattggtgtacatcacatggaggctcatgctcttgtagccaggttaactgaacaagaactacaatttcctttcatggctctgcttatttcaggaggacacaatgtactcatccttgctcgtgatcttggtcattatgttgtacaacttgggaccacaatagatgatgccattggtgaggcatatgataagatagcaaaatggcttggtcttgacttgaggagaagtggttccgactttatctattctataacttctgtgactttgaggttgtcccttgtgcagagagttgcagtattacatctgaaagaaaggtgtgaacgagcaattgaatgggctttgaagattgaaccttctgtaaaacatatggttgtgtctggtggtgttgcatcaaatcaatatgttcgggctcaacttgatcaggttgtcaagaaaaacaacttacaacttgtatgccctccacccagcctttgtacagacaacggtgtaatggtggcatggactggcattgagaacttttgtatgggaagatttgatccaccaccacctgcagatgaacctgaagatattgagtcaagttttagatttgggaaaatcattggcttagattggaactttctggtgatgaagagaagattgatcaccaccagtatggcactggctaaacaacacgattgggatcaagcaaatgttgtaggaatgttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000408 GO:0002949 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016020 GO:0016070 GO:0019866 GO:0022414 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0070525 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M22

Protein Analysis

408

Amino Acids

44.76

Weight (kDa)

8.8

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TsaD	PF00814	91 - 340	4.3e-67	tRNA N6-adenosine threonylcarbamoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45270
fragaria_vesca	FvH4_7g11490 FvH4_7g11490 FvH4_7g11490
malus_domestica	MD02G1206900.v1.1
prunus_persica	Prupe.2G143300_v2.0.a1
pyrus_communis	pycom02g16910
rosa_chinensis	RchiOBHm_Chr1g0349791 RchiOBHm_Chr1g0349801 RchiOBHm_Chr1g0349851 RchiOBHm_Chr1g0349931
rosa_laevigata	RLG00000028515
rosa_multiflora	Rmu_sc0000778.1_g000003 Rmu_sc0005220.1_g000015 Rmu_sc0007377.1_g000005
rosa_roxburghii	Rroxscaffold_4G00305270
rosa_rugosa	Rorug01G0207000 Rorug01G0207000
rosa_samantha	Rh1AG223600 Rh1BG190800 Rh1CG208400
rosa_wichuraiana	Rw0G007620 Rw1G019050 Rw1G019060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1075
Acc36I	ACCTGC	1 cut(s)	1075
AccB1I	GGYRCC	1 cut(s)	24
AccB7I	CCANNNNNTGG	1 cut(s)	524
AciI	CCGC	5 cut(s)	15, 144, 243, 246, 481
AclWI	GGATC	2 cut(s)	1049, 1206
AcsI	RAATTY	2 cut(s)	127, 273
AcuI	CTGAAG	1 cut(s)	1101
AcyI	GRCGYC	1 cut(s)	25
AfaI	GTAC	5 cut(s)	505, 531, 627, 663, 994
AfeI	AGCGCT	1 cut(s)	390
AfiI	CCNNNNNNNGG	3 cut(s)	21, 90, 524
AgsI	TTSAA	4 cut(s)	79, 851, 862, 869
AjnI	CCWGG	2 cut(s)	448, 560
AloI	GAACNNNNNNTCC	4 cut(s)	175, 207, 733, 765
AluBI	AGCT	5 cut(s)	65, 231, 401, 488, 513
AluI	AGCT	5 cut(s)	65, 231, 401, 488, 513
Alw21I	GWGCWC	2 cut(s)	67, 357
Alw44I	GTGCAC	1 cut(s)	353
AlwI	GGATC	2 cut(s)	1049, 1206
AlwNI	CAGNNNCTG	1 cut(s)	434
Aor51HI	AGCGCT	1 cut(s)	390
AoxI	GGCC	2 cut(s)	3, 92
ApaLI	GTGCAC	1 cut(s)	353
ApeKI	GCWGC	2 cut(s)	231, 248
ApoI	RAATTY	2 cut(s)	127, 273
Asp700I	GAANNNNTTC	1 cut(s)	748
AspLEI	GCGC	2 cut(s)	27, 391
AspS9I	GGNCC	4 cut(s)	4, 93, 446, 672
AsuHPI	GGTGA	4 cut(s)	281, 707, 1153, 1153
AvaII	GGWCC	2 cut(s)	446, 672
BaeGI	GKGCMC	1 cut(s)	357
BanI	GGYRCC	1 cut(s)	24
BanII	GRGCYC	2 cut(s)	67, 931
BauI	CACGAG	1 cut(s)	639
BbsI	GAAGAC	1 cut(s)	458
Bbv12I	GWGCWC	2 cut(s)	67, 357
BbvI	GCAGC	2 cut(s)	218, 235
BceAI	ACGGC	1 cut(s)	236
BciT130I	CCWGG	2 cut(s)	450, 562
BciVI	GTATCC	1 cut(s)	201
BclI	TGATCA	2 cut(s)	937, 1158
BfaI	CTAG	1 cut(s)	167
BfmI	CTRYAG	2 cut(s)	426, 1068
BfoI	RGCGCY	2 cut(s)	28, 392
BfuAI	ACCTGC	1 cut(s)	1075
BfuI	GTATCC	1 cut(s)	201
BisI	GCNGC	3 cut(s)	232, 246, 249
BlsI	GCNGC	3 cut(s)	233, 247, 250
Bme1390I	CCNGG	2 cut(s)	450, 562
Bme18I	GGWCC	2 cut(s)	446, 672
BmgT120I	GGNCC	4 cut(s)	4, 93, 446, 672
BmiI	GGNNCC	3 cut(s)	26, 673, 751
BmrFI	CCNGG	2 cut(s)	450, 562
BmsI	GCATC	4 cut(s)	155, 228, 676, 917
BpiI	GAAGAC	1 cut(s)	458
BpuEI	CTTGAG	1 cut(s)	757
BsaBI	GATNNNNATC	1 cut(s)	1197
BsaHI	GRCGYC	1 cut(s)	25
BsaJI	CCNNGG	1 cut(s)	89
BsaXI	ACNNNNNCTCC	4 cut(s)	169, 199, 733, 763
Bsc4I	CCNNNNNNNGG	3 cut(s)	21, 90, 524
Bse1I	ACTGG	3 cut(s)	1027, 1167, 1182
Bse8I	GATNNNNATC	1 cut(s)	1197
BseBI	CCWGG	2 cut(s)	450, 562
BseDI	CCNNGG	1 cut(s)	89
BseGI	GGATG	1 cut(s)	630
BseJI	GATNNNNATC	1 cut(s)	1197
BseLI	CCNNNNNNNGG	3 cut(s)	21, 90, 524
BseMII	CTCAG	4 cut(s)	63, 73, 292, 311
BseNI	ACTGG	3 cut(s)	1027, 1167, 1182
BseRI	GAGGAG	2 cut(s)	26, 754
BseSI	GKGCMC	1 cut(s)	357
BseXI	GCAGC	2 cut(s)	218, 235
BseYI	CCCAGC	1 cut(s)	983
BsgI	GTGCAG	1 cut(s)	821
BshFI	GGCC	2 cut(s)	5, 94
BshNI	GGYRCC	1 cut(s)	24
BsiHKAI	GWGCWC	2 cut(s)	67, 357
BslFI	GGGAC	2 cut(s)	685, 778
BslI	CCNNNNNNNGG	3 cut(s)	21, 90, 524
BsmFI	GGGAC	2 cut(s)	685, 778
BsnI	GGCC	2 cut(s)	5, 94
Bsp1286I	GDGCHC	3 cut(s)	67, 357, 931
Bsp1407I	TGTACA	3 cut(s)	529, 661, 992
Bsp143I	GATC	7 cut(s)	202, 370, 643, 937, 1054, 1158, 1198
BspACI	CCGC	5 cut(s)	15, 144, 243, 246, 481
BspANI	GGCC	2 cut(s)	5, 94
BspCNI	CTCAG	4 cut(s)	62, 72, 291, 310
BspLI	GGNNCC	3 cut(s)	26, 673, 751
BspMAI	CTGCAG	2 cut(s)	430, 1072
BspMI	ACCTGC	1 cut(s)	1075
BspPI	GGATC	2 cut(s)	1049, 1206
BspT107I	GGYRCC	1 cut(s)	24
BsrGI	TGTACA	3 cut(s)	529, 661, 992
BsrI	ACTGG	3 cut(s)	1027, 1167, 1182
BssECI	CCNNGG	1 cut(s)	89
BssMI	GATC	7 cut(s)	202, 370, 643, 937, 1054, 1158, 1198
BssNI	GRCGYC	1 cut(s)	25
BssSI	CACGAG	1 cut(s)	639
BssT1I	CCWWGG	1 cut(s)	89
Bst2BI	CACGAG	1 cut(s)	639
Bst2UI	CCWGG	2 cut(s)	450, 562
Bst4CI	ACNGT	2 cut(s)	269, 1004
Bst6I	CTCTTC	2 cut(s)	16, 1142
BstACI	GRCGYC	1 cut(s)	25
BstAUI	TGTACA	3 cut(s)	529, 661, 992
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	5 cut(s)	49, 59, 278, 297, 1123
BstF5I	GGATG	1 cut(s)	630
BstH2I	RGCGCY	2 cut(s)	28, 392
BstHHI	GCGC	2 cut(s)	27, 391
BstKTI	GATC	7 cut(s)	205, 373, 646, 940, 1057, 1161, 1201
BstMBI	GATC	7 cut(s)	202, 370, 643, 937, 1054, 1158, 1198
BstMWI	GCNNNNNNNGC	2 cut(s)	388, 557
BstNI	CCWGG	2 cut(s)	450, 562
BstSCI	CCNGG	2 cut(s)	448, 560
BstSFI	CTRYAG	2 cut(s)	426, 1068
BstSLI	GKGCMC	1 cut(s)	357
BstV1I	GCAGC	2 cut(s)	218, 235
BstV2I	GAAGAC	1 cut(s)	458
BstXI	CCANNNNNNTGG	1 cut(s)	1171
BsuI	GTATCC	1 cut(s)	201
BsuRI	GGCC	2 cut(s)	5, 94
BtsCI	GGATG	1 cut(s)	630
BtsIMutI	CAGTG	1 cut(s)	1175
BveI	ACCTGC	1 cut(s)	1075
Cac8I	GCNNGC	1 cut(s)	312
CaiI	CAGNNNCTG	1 cut(s)	434
CfoI	GCGC	2 cut(s)	27, 391
Cfr13I	GGNCC	4 cut(s)	4, 93, 446, 672
Csp6I	GTAC	5 cut(s)	504, 530, 626, 662, 993
CviAII	CATG	6 cut(s)	97, 200, 538, 548, 595, 1017
CviQI	GTAC	5 cut(s)	504, 530, 626, 662, 993
DdeI	CTNAG	5 cut(s)	49, 59, 278, 297, 1123
DinI	GGCGCC	1 cut(s)	26
DpnI	GATC	7 cut(s)	204, 372, 645, 939, 1056, 1160, 1200
DpnII	GATC	7 cut(s)	202, 370, 643, 937, 1054, 1158, 1198
Eam1104I	CTCTTC	2 cut(s)	16, 1142
EarI	CTCTTC	2 cut(s)	16, 1142
Ecl136II	GAGCTC	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	89
Eco24I	GRGCYC	2 cut(s)	67, 931
Eco47I	GGWCC	2 cut(s)	446, 672
Eco47III	AGCGCT	1 cut(s)	390
Eco53kI	GAGCTC	1 cut(s)	65
Eco57I	CTGAAG	1 cut(s)	1101
EcoICRI	GAGCTC	1 cut(s)	65
EcoRII	CCWGG	2 cut(s)	448, 560
EcoT14I	CCWWGG	1 cut(s)	89
EcoT38I	GRGCYC	2 cut(s)	67, 931
EgeI	GGCGCC	1 cut(s)	26
EheI	GGCGCC	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	89
FaeI	CATG	6 cut(s)	100, 203, 541, 551, 598, 1020
FaqI	GGGAC	2 cut(s)	685, 778
FatI	CATG	6 cut(s)	96, 199, 537, 547, 594, 1016
FauNDI	CATATG	2 cut(s)	703, 885
FbaI	TGATCA	2 cut(s)	937, 1158
Fnu4HI	GCNGC	3 cut(s)	232, 246, 249
FokI	GGATG	1 cut(s)	617
FriOI	GRGCYC	2 cut(s)	67, 931
Fsp4HI	GCNGC	3 cut(s)	232, 246, 249
FspBI	CTAG	1 cut(s)	167
GlaI	GCGC	2 cut(s)	26, 390
GluI	GCNGC	3 cut(s)	232, 246, 249
GsaI	CCCAGC	1 cut(s)	987
HaeII	RGCGCY	2 cut(s)	28, 392
HaeIII	GGCC	2 cut(s)	5, 94
HhaI	GCGC	2 cut(s)	27, 391
Hin1I	GRCGYC	1 cut(s)	25
Hin1II	CATG	6 cut(s)	100, 203, 541, 551, 598, 1020
Hin6I	GCGC	2 cut(s)	25, 389
HinP1I	GCGC	2 cut(s)	25, 389
HincII	GTYRAC	1 cut(s)	567
HindII	GTYRAC	1 cut(s)	567
HinfI	GANTC	2 cut(s)	154, 1091
HpaI	GTTAAC	1 cut(s)	567
HphI	GGTGA	4 cut(s)	281, 707, 1153, 1153
Hpy166II	GTNNAC	4 cut(s)	355, 530, 567, 839
Hpy188I	TCNGA	3 cut(s)	62, 754, 825
Hpy188III	TCNNGA	6 cut(s)	167, 256, 612, 641, 731, 949
Hpy8I	GTNNAC	4 cut(s)	355, 530, 567, 839
Hpy99I	CGWCG	2 cut(s)	239, 257
HpyAV	CCTTC	1 cut(s)	882
HpyCH4III	ACNGT	2 cut(s)	269, 1004
HpyCH4V	TGCA	8 cut(s)	355, 361, 382, 428, 802, 812, 908, 1070
HpyF10VI	GCNNNNNNNGC	2 cut(s)	388, 557
HpyF3I	CTNAG	5 cut(s)	49, 59, 278, 297, 1123
Hsp92I	GRCGYC	1 cut(s)	25
Hsp92II	CATG	6 cut(s)	100, 203, 541, 551, 598, 1020
HspAI	GCGC	2 cut(s)	25, 389
KasI	GGCGCC	1 cut(s)	24
Ksp22I	TGATCA	2 cut(s)	937, 1158
KspAI	GTTAAC	1 cut(s)	567
Kzo9I	GATC	7 cut(s)	202, 370, 643, 937, 1054, 1158, 1198
LmnI	GCTCC	1 cut(s)	337
Lsp1109I	GCAGC	2 cut(s)	218, 235
LweI	GCATC	4 cut(s)	155, 228, 676, 917
MaeI	CTAG	1 cut(s)	167
MaeIII	GTNAC	2 cut(s)	436, 778
MalI	GATC	7 cut(s)	204, 372, 645, 939, 1056, 1160, 1200
MboI	GATC	7 cut(s)	202, 370, 643, 937, 1054, 1158, 1198
MfeI	CAATTG	1 cut(s)	846
MhlI	GDGCHC	3 cut(s)	67, 357, 931
MluCI	AATT	7 cut(s)	127, 273, 403, 495, 519, 584, 846
Mly113I	GGCGCC	1 cut(s)	25
MlyI	GAGTC	1 cut(s)	1100
MmeI	TCCRAC	3 cut(s)	159, 182, 777
MroXI	GAANNNNTTC	1 cut(s)	748
MseI	TTAA	3 cut(s)	407, 455, 566
MslI	CAYNNNNRTG	1 cut(s)	1169
MspA1I	CMGCKG	2 cut(s)	231, 248
MspR9I	CCNGG	2 cut(s)	450, 562
MunI	CAATTG	1 cut(s)	846
MvaI	CCWGG	2 cut(s)	450, 562
MwoI	GCNNNNNNNGC	2 cut(s)	388, 557
NarI	GGCGCC	1 cut(s)	25
NdeI	CATATG	2 cut(s)	703, 885
NdeII	GATC	7 cut(s)	202, 370, 643, 937, 1054, 1158, 1198
NlaIII	CATG	6 cut(s)	100, 203, 541, 551, 598, 1020
NlaIV	GGNNCC	3 cut(s)	26, 673, 751
NmuCI	GTSAC	1 cut(s)	778
PaqCI	CACCTGC	1 cut(s)	1075
PdmI	GAANNNNTTC	1 cut(s)	748
PfeI	GAWTC	1 cut(s)	154
PflMI	CCANNNNNTGG	1 cut(s)	524
PkrI	GCNGC	3 cut(s)	233, 247, 250
PleI	GAGTC	1 cut(s)	1099
PluTI	GGCGCC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	1099
Psp124BI	GAGCTC	1 cut(s)	67
Psp6I	CCWGG	2 cut(s)	448, 560
PspFI	CCCAGC	1 cut(s)	983
PspGI	CCWGG	2 cut(s)	448, 560
PspN4I	GGNNCC	3 cut(s)	26, 673, 751
PspPI	GGNCC	4 cut(s)	4, 93, 446, 672
PsrI	GAACNNNNNNTAC	2 cut(s)	564, 596
PstI	CTGCAG	2 cut(s)	430, 1072
PstNI	CAGNNNCTG	1 cut(s)	434
PvuII	CAGCTG	1 cut(s)	231
RsaI	GTAC	5 cut(s)	505, 531, 627, 663, 994
RsaNI	GTAC	5 cut(s)	504, 530, 626, 662, 993
RseI	CAYNNNNRTG	1 cut(s)	1169
SacI	GAGCTC	1 cut(s)	67
SaqAI	TTAA	3 cut(s)	407, 455, 566
SatI	GCNGC	3 cut(s)	232, 246, 249
Sau3AI	GATC	7 cut(s)	202, 370, 643, 937, 1054, 1158, 1198
Sau96I	GGNCC	4 cut(s)	4, 93, 446, 672
SchI	GAGTC	1 cut(s)	1100
ScrFI	CCNGG	2 cut(s)	450, 562
SduI	GDGCHC	3 cut(s)	67, 357, 931
SfaNI	GCATC	4 cut(s)	155, 228, 676, 917
SfcI	CTRYAG	2 cut(s)	426, 1068
SfoI	GGCGCC	1 cut(s)	26
SinI	GGWCC	2 cut(s)	446, 672
SmiMI	CAYNNNNRTG	1 cut(s)	1169
SmlI	CTYRAG	1 cut(s)	736
SmoI	CTYRAG	1 cut(s)	736
Sse9I	AATT	7 cut(s)	127, 273, 403, 495, 519, 584, 846
SsiI	CCGC	5 cut(s)	15, 144, 243, 246, 481
SspDI	GGCGCC	1 cut(s)	24
SspMI	CTAG	1 cut(s)	167
SstI	GAGCTC	1 cut(s)	67
StyD4I	CCNGG	2 cut(s)	448, 560
StyI	CCWWGG	1 cut(s)	89
TaaI	ACNGT	2 cut(s)	269, 1004
TaqI	TCGA	1 cut(s)	222
TasI	AATT	7 cut(s)	127, 273, 403, 495, 519, 584, 846
TatI	WGTACW	4 cut(s)	529, 625, 661, 992
TauI	GCSGC	1 cut(s)	248
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	3 cut(s)	407, 455, 566
Tru9I	TTAA	3 cut(s)	407, 455, 566
TscAI	CASTG	1 cut(s)	1182
TseFI	GTSAC	1 cut(s)	778
TseI	GCWGC	2 cut(s)	231, 248
Tsp45I	GTSAC	1 cut(s)	778
TspDTI	ATGAA	3 cut(s)	583, 1089, 1160
TspGWI	ACGGA	1 cut(s)	177
TspRI	CASTG	1 cut(s)	1182
Van91I	CCANNNNNTGG	1 cut(s)	524
VneI	GTGCAC	1 cut(s)	353
VpaK11BI	GGWCC	2 cut(s)	446, 672
XapI	RAATTY	2 cut(s)	127, 273
XbaI	TCTAGA	1 cut(s)	166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1174
XmnI	GAANNNNTTC	1 cut(s)	748
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.