Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007628.1

Orthogroup ID

OG0009869

Physical Location & Seq

Genomic Coordinates Forward (+)

35630 .. 36528

Gene Structure 899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007628.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 899 bp

atgaatcactcccctcggtttttatcccacgccgtcaaacatgttgccgctactctcttcttgatcctactcctctcaccggaaactctagctcagcctactcccgaccagcagcgagatgacccctttcgctaccagaagttcagcccctcgatggcggtcatcatcgtggtcctcgtcgccgccctcttcctcatgggattcttctccatctacatccgccactgctccgaaccccagtccggcagcgtccacgccggcggggccatcaccggccgctccagacgaggcgctgcgcgtggactcgactccagcgtcatcgacacgttcccgaccttggagtacaaagtcgtcaagggtttgaaaataggtaagggagcgttggagtgcgccgtgtgcttgaacgagtttgaggacgatgagacgctgcgtttgattcccaagtgcgatcatgtgtttcatcccgagtgtattgacgagtggttggcttctcatactacgtgtccggtttgccgggccaatctagagcctcaggccgatgacccggtcgtcgaactcggtgagttgaccgcccatgacgacgtcgaagcccaacacgaggtcgactgtgactcggcaccggaccaccacaacagtgatggacagcaggaagaagtggagcctgaggtagtgaacgtgaaccagactttgaataggaaccgcacgcgtggaagatcgaaccggttccgccggttgtttccccggtctcactcgaccgggcactctttggtccaaccgggcgaggacacggagcggttcactttgagactaccggtcgaggtgagaaaacagatcatcaaccggaagctacaccggtccattagtgtgttggtgttgccgagagaagggagttcacggcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009737 GO:0009814 GO:0009816 GO:0009987 GO:0009991 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0042493 GO:0042742 GO:0043161 GO:0043170 GO:0043207 GO:0043412 GO:0043562 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071496 GO:0071704 GO:0071944 GO:0097305 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

300

Amino Acids

33.65

Weight (kDa)

6.31

Isoelectric Point (pI)

51.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05200 AT5G27420
fragaria_vesca	FvH4_6g05450
malus_domestica	MD04G1208600.v1.1 MD12G1222600.v1.1
prunus_persica	Prupe.6G329500_v2.0.a1
pyrus_communis	pycom04g18470 pycom12g20880
rosa_chinensis	RchiOBHm_Chr3g0454221
rosa_laevigata	RLG00000025475
rosa_multiflora	Rmu_sc0007628.1_g000006 Rmu_sc0026184.1_g000001 Rmu_sc0026185.1_g000001
rosa_roxburghii	Rroxscaffold_165G00437000 Rroxscaffold_6G00425360
rosa_rugosa	Rorug02G0653500
rosa_samantha	Rh3AG056800 Rh3BG058200 Rh3CG057400 Rh3DG058700
rosa_wichuraiana	Rw3G004370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	314, 548
AatII	GACGTC	1 cut(s)	585
AccB1I	GGYRCC	1 cut(s)	616
AccBSI	CCGCTC	2 cut(s)	279, 793
AccI	GTMKAC	1 cut(s)	603
AccII	CGCG	2 cut(s)	298, 706
AclWI	GGATC	1 cut(s)	58
AcoI	YGGCCR	1 cut(s)	274
AcyI	GRCGYC	1 cut(s)	582
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	6 cut(s)	79, 154, 242, 337, 598, 884
AflIII	ACRYGT	4 cut(s)	40, 324, 500, 704
AgeI	ACCGGT	3 cut(s)	720, 811, 852
AgsI	TTSAA	3 cut(s)	364, 403, 691
AhdI	GACNNNNNGTC	1 cut(s)	812
AleI	CACNNNNGTG	1 cut(s)	633
AluBI	AGCT	2 cut(s)	92, 847
AluI	AGCT	2 cut(s)	92, 847
Alw26I	GTCTC	3 cut(s)	416, 750, 799
AlwI	GGATC	1 cut(s)	58
Ama87I	CYCGRG	1 cut(s)	464
AoxI	GGCC	4 cut(s)	264, 274, 516, 534
ApeKI	GCWGC	4 cut(s)	112, 246, 293, 427
ArsI	GACNNNNNNTTYG	2 cut(s)	415, 447
AsiGI	ACCGGT	3 cut(s)	720, 811, 852
Asp700I	GAANNNNTTC	1 cut(s)	722
AspLEI	GCGC	3 cut(s)	293, 298, 392
AspS9I	GGNCC	6 cut(s)	172, 264, 516, 622, 769, 855
AsuC2I	CCSGG	5 cut(s)	515, 545, 742, 757, 777
AsuHPI	GGTGA	4 cut(s)	69, 262, 572, 832
AvaI	CYCGRG	1 cut(s)	464
AvaII	GGWCC	4 cut(s)	172, 622, 769, 855
AxyI	CCTNAGG	2 cut(s)	531, 663
BaeGI	GKGCMC	1 cut(s)	762
BanI	GGYRCC	1 cut(s)	616
BauI	CACGAG	1 cut(s)	596
BbvI	GCAGC	4 cut(s)	124, 258, 280, 414
BccI	CCATC	4 cut(s)	148, 218, 275, 632
BceAI	ACGGC	2 cut(s)	17, 377
BcnI	CCSGG	5 cut(s)	515, 545, 742, 757, 777
BcoDI	GTCTC	3 cut(s)	416, 750, 799
BfaI	CTAG	2 cut(s)	89, 524
BfoI	RGCGCY	1 cut(s)	294
BglI	GCCNNNNNGGC	1 cut(s)	263
BisI	GCNGC	7 cut(s)	48, 113, 183, 247, 277, 294, 428
BlpI	GCTNAGC	1 cut(s)	93
BlsI	GCNGC	7 cut(s)	49, 114, 184, 248, 278, 295, 429
Bme1390I	CCNGG	5 cut(s)	515, 545, 742, 757, 777
Bme18I	GGWCC	4 cut(s)	172, 622, 769, 855
BmeRI	GACNNNNNGTC	1 cut(s)	812
BmeT110I	CYCGRG	1 cut(s)	464
BmgT120I	GGNCC	6 cut(s)	172, 264, 516, 622, 769, 855
BmiI	GGNNCC	5 cut(s)	265, 618, 660, 698, 725
BmrFI	CCNGG	5 cut(s)	515, 545, 742, 757, 777
BmrI	ACTGGG	1 cut(s)	232
BmuI	ACTGGG	1 cut(s)	232
BpmI	CTGGAG	2 cut(s)	265, 295
Bpu1102I	GCTNAGC	1 cut(s)	93
BpuMI	CCSGG	5 cut(s)	515, 545, 742, 757, 777
BsaAI	YACGTR	1 cut(s)	501
BsaHI	GRCGYC	1 cut(s)	582
BsaI	GGTCTC	1 cut(s)	750
BsaJI	CCNNGG	3 cut(s)	14, 336, 740
BsaWI	WCCGGW	7 cut(s)	79, 505, 619, 720, 811, 840, 852
Bsc4I	CCNNNNNNNGG	6 cut(s)	79, 154, 242, 337, 598, 884
Bse118I	RCCGGY	6 cut(s)	257, 272, 720, 729, 811, 852
Bse1I	ACTGG	1 cut(s)	238
Bse21I	CCTNAGG	2 cut(s)	531, 663
BseDI	CCNNGG	3 cut(s)	14, 336, 740
BseGI	GGATG	2 cut(s)	216, 460
BseLI	CCNNNNNNNGG	6 cut(s)	79, 154, 242, 337, 598, 884
BseMII	CTCAG	3 cut(s)	107, 545, 654
BseNI	ACTGG	1 cut(s)	238
BseRI	GAGGAG	1 cut(s)	62
BseSI	GKGCMC	1 cut(s)	762
BseX3I	CGGCCG	1 cut(s)	274
BseXI	GCAGC	4 cut(s)	124, 258, 280, 414
Bsh1236I	CGCG	2 cut(s)	298, 706
Bsh1285I	CGRYCG	4 cut(s)	277, 549, 756, 816
BshFI	GGCC	4 cut(s)	266, 276, 518, 536
BshNI	GGYRCC	1 cut(s)	616
BshTI	ACCGGT	3 cut(s)	720, 811, 852
BsiEI	CGRYCG	4 cut(s)	277, 549, 756, 816
BsiHKCI	CYCGRG	1 cut(s)	464
BslI	CCNNNNNNNGG	6 cut(s)	79, 154, 242, 337, 598, 884
BsmAI	GTCTC	3 cut(s)	416, 750, 799
BsmBI	CGTCTC	1 cut(s)	416
BsnI	GGCC	4 cut(s)	266, 276, 518, 536
Bso31I	GGTCTC	1 cut(s)	750
BsoBI	CYCGRG	1 cut(s)	464
Bsp1286I	GDGCHC	1 cut(s)	762
Bsp143I	GATC	4 cut(s)	63, 448, 713, 831
Bsp1720I	GCTNAGC	1 cut(s)	93
BspANI	GGCC	4 cut(s)	266, 276, 518, 536
BspCNI	CTCAG	3 cut(s)	106, 544, 655
BspFNI	CGCG	2 cut(s)	298, 706
BspLI	GGNNCC	5 cut(s)	265, 618, 660, 698, 725
BspPI	GGATC	1 cut(s)	58
BspT107I	GGYRCC	1 cut(s)	616
BspTNI	GGTCTC	1 cut(s)	750
BsrBI	CCGCTC	2 cut(s)	279, 793
BsrFI	RCCGGY	6 cut(s)	257, 272, 720, 729, 811, 852
BsrI	ACTGG	1 cut(s)	238
BssAI	RCCGGY	6 cut(s)	257, 272, 720, 729, 811, 852
BssECI	CCNNGG	3 cut(s)	14, 336, 740
BssMI	GATC	4 cut(s)	63, 448, 713, 831
BssNI	GRCGYC	1 cut(s)	582
BssSI	CACGAG	1 cut(s)	596
BssT1I	CCWWGG	1 cut(s)	336
Bst2BI	CACGAG	1 cut(s)	596
Bst4CI	ACNGT	2 cut(s)	608, 635
Bst6I	CTCTTC	2 cut(s)	62, 194
BstACI	GRCGYC	1 cut(s)	582
BstBAI	YACGTR	1 cut(s)	501
BstC8I	GCNNGC	2 cut(s)	259, 704
BstDEI	CTNAG	3 cut(s)	93, 531, 663
BstF5I	GGATG	2 cut(s)	216, 460
BstFNI	CGCG	2 cut(s)	298, 706
BstH2I	RGCGCY	1 cut(s)	294
BstHHI	GCGC	3 cut(s)	293, 298, 392
BstKTI	GATC	4 cut(s)	66, 451, 716, 834
BstMAI	GTCTC	3 cut(s)	416, 750, 799
BstMBI	GATC	4 cut(s)	63, 448, 713, 831
BstMCI	CGRYCG	4 cut(s)	277, 549, 756, 816
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 396
BstNSI	RCATGY	1 cut(s)	44
BstSCI	CCNGG	5 cut(s)	513, 543, 740, 755, 775
BstSLI	GKGCMC	1 cut(s)	762
BstUI	CGCG	2 cut(s)	298, 706
BstV1I	GCAGC	4 cut(s)	124, 258, 280, 414
BstZI	CGGCCG	1 cut(s)	274
Bsu36I	CCTNAGG	2 cut(s)	531, 663
BsuRI	GGCC	4 cut(s)	266, 276, 518, 536
BtsCI	GGATG	2 cut(s)	216, 460
BtsI	GCAGTG	1 cut(s)	223
BtsIMutI	CAGTG	2 cut(s)	223, 640
Cac8I	GCNNGC	2 cut(s)	259, 704
CfoI	GCGC	3 cut(s)	293, 298, 392
Cfr10I	RCCGGY	6 cut(s)	257, 272, 720, 729, 811, 852
Cfr13I	GGNCC	6 cut(s)	172, 264, 516, 622, 769, 855
CseI	GACGC	3 cut(s)	238, 304, 433
Csp6I	GTAC	1 cut(s)	343
CspAI	ACCGGT	3 cut(s)	720, 811, 852
CviAII	CATG	4 cut(s)	41, 196, 452, 575
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	3 cut(s)	93, 531, 663
DpnI	GATC	4 cut(s)	65, 450, 715, 833
DpnII	GATC	4 cut(s)	63, 448, 713, 831
DrdI	GACNNNNNNGTC	2 cut(s)	314, 548
DriI	GACNNNNNGTC	1 cut(s)	812
DseDI	GACNNNNNNGTC	2 cut(s)	314, 548
EaeI	YGGCCR	1 cut(s)	274
EagI	CGGCCG	1 cut(s)	274
Eam1104I	CTCTTC	2 cut(s)	62, 194
Eam1105I	GACNNNNNGTC	1 cut(s)	812
EarI	CTCTTC	2 cut(s)	62, 194
EciI	GGCGGA	2 cut(s)	209, 716
EclXI	CGGCCG	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	336
Eco31I	GGTCTC	1 cut(s)	750
Eco47I	GGWCC	4 cut(s)	172, 622, 769, 855
Eco52I	CGGCCG	1 cut(s)	274
Eco81I	CCTNAGG	2 cut(s)	531, 663
Eco88I	CYCGRG	1 cut(s)	464
EcoT14I	CCWWGG	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	336
Esp3I	CGTCTC	1 cut(s)	416
FaeI	CATG	4 cut(s)	44, 199, 455, 578
FaiI	YATR	5 cut(s)	42, 197, 453, 495, 576
FatI	CATG	4 cut(s)	40, 195, 451, 574
FauI	CCCGC	1 cut(s)	254
FblI	GTMKAC	1 cut(s)	603
Fnu4HI	GCNGC	7 cut(s)	48, 113, 183, 247, 277, 294, 428
FokI	GGATG	2 cut(s)	203, 447
Fsp4HI	GCNGC	7 cut(s)	48, 113, 183, 247, 277, 294, 428
FspBI	CTAG	2 cut(s)	89, 524
GlaI	GCGC	3 cut(s)	292, 297, 391
GluI	GCNGC	7 cut(s)	48, 113, 183, 247, 277, 294, 428
GsuI	CTGGAG	2 cut(s)	265, 295
HaeII	RGCGCY	1 cut(s)	294
HaeIII	GGCC	4 cut(s)	266, 276, 518, 536
HgaI	GACGC	3 cut(s)	238, 304, 433
HhaI	GCGC	3 cut(s)	293, 298, 392
Hin1I	GRCGYC	1 cut(s)	582
Hin1II	CATG	4 cut(s)	44, 199, 455, 578
Hin6I	GCGC	3 cut(s)	291, 296, 390
HinP1I	GCGC	3 cut(s)	291, 296, 390
HincII	GTYRAC	2 cut(s)	567, 604
HindII	GTYRAC	2 cut(s)	567, 604
HinfI	GANTC	6 cut(s)	4, 201, 303, 308, 436, 611
HphI	GGTGA	4 cut(s)	69, 262, 572, 832
Hpy166II	GTNNAC	8 cut(s)	253, 302, 567, 604, 673, 679, 798, 893
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	6 cut(s)	61, 104, 282, 331, 464, 524
Hpy8I	GTNNAC	8 cut(s)	253, 302, 567, 604, 673, 679, 798, 893
Hpy99I	CGWCG	4 cut(s)	182, 554, 584, 587
HpyAV	CCTTC	1 cut(s)	878
HpyCH4III	ACNGT	2 cut(s)	608, 635
HpyCH4IV	ACGT	4 cut(s)	326, 500, 582, 675
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 396
HpyF3I	CTNAG	3 cut(s)	93, 531, 663
HpySE526I	ACGT	4 cut(s)	326, 500, 582, 675
Hsp92I	GRCGYC	1 cut(s)	582
Hsp92II	CATG	4 cut(s)	44, 199, 455, 578
HspAI	GCGC	3 cut(s)	291, 296, 390
KroI	GCCGGC	1 cut(s)	257
KroNI	GCCGGC	1 cut(s)	259
Kzo9I	GATC	4 cut(s)	63, 448, 713, 831
LmnI	GCTCC	5 cut(s)	233, 284, 377, 658, 790
Lsp1109I	GCAGC	4 cut(s)	124, 258, 280, 414
MaeI	CTAG	2 cut(s)	89, 524
MaeII	ACGT	4 cut(s)	326, 500, 582, 675
MaeIII	GTNAC	1 cut(s)	608
MalI	GATC	4 cut(s)	65, 450, 715, 833
MbiI	CCGCTC	2 cut(s)	279, 793
MboI	GATC	4 cut(s)	63, 448, 713, 831
MboII	GAAGA	5 cut(s)	49, 181, 196, 662, 723
MhlI	GDGCHC	1 cut(s)	762
MluI	ACGCGT	1 cut(s)	704
MlyI	GAGTC	3 cut(s)	297, 302, 605
MmeI	TCCRAC	2 cut(s)	363, 796
MreI	CGCCGGCG	1 cut(s)	257
MroNI	GCCGGC	1 cut(s)	257
MroXI	GAANNNNTTC	1 cut(s)	722
MslI	CAYNNNNRTG	3 cut(s)	167, 633, 863
MspR9I	CCNGG	5 cut(s)	515, 545, 742, 757, 777
MteI	GCGCNGCGC	1 cut(s)	294
MvnI	CGCG	2 cut(s)	298, 706
MwoI	GCNNNNNNNGC	2 cut(s)	263, 396
NaeI	GCCGGC	1 cut(s)	259
NciI	CCSGG	5 cut(s)	515, 545, 742, 757, 777
NdeII	GATC	4 cut(s)	63, 448, 713, 831
NgoMIV	GCCGGC	1 cut(s)	257
NlaIII	CATG	4 cut(s)	44, 199, 455, 578
NlaIV	GGNNCC	5 cut(s)	265, 618, 660, 698, 725
NmeAIII	GCCGAG	1 cut(s)	593
NmuCI	GTSAC	1 cut(s)	608
NspI	RCATGY	1 cut(s)	44
OliI	CACNNNNGTG	1 cut(s)	633
PciI	ACATGT	1 cut(s)	40
PcsI	WCGNNNNNNNCGW	2 cut(s)	174, 312
PdiI	GCCGGC	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	722
PfeI	GAWTC	3 cut(s)	4, 201, 436
PflFI	GACNNNGTC	2 cut(s)	545, 581
PinAI	ACCGGT	3 cut(s)	720, 811, 852
PkrI	GCNGC	7 cut(s)	49, 114, 184, 248, 278, 295, 429
PleI	GAGTC	3 cut(s)	297, 302, 605
PpsI	GAGTC	3 cut(s)	297, 302, 605
Ppu21I	YACGTR	1 cut(s)	501
PscI	ACATGT	1 cut(s)	40
PspN4I	GGNNCC	5 cut(s)	265, 618, 660, 698, 725
PspPI	GGNCC	6 cut(s)	172, 264, 516, 622, 769, 855
PsyI	GACNNNGTC	2 cut(s)	545, 581
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
RseI	CAYNNNNRTG	3 cut(s)	167, 633, 863
SalI	GTCGAC	1 cut(s)	602
SatI	GCNGC	7 cut(s)	48, 113, 183, 247, 277, 294, 428
Sau3AI	GATC	4 cut(s)	63, 448, 713, 831
Sau96I	GGNCC	6 cut(s)	172, 264, 516, 622, 769, 855
SchI	GAGTC	3 cut(s)	297, 302, 605
ScrFI	CCNGG	5 cut(s)	515, 545, 742, 757, 777
SduI	GDGCHC	1 cut(s)	762
SgrAI	CRCCGGYG	1 cut(s)	257
SinI	GGWCC	4 cut(s)	172, 622, 769, 855
SmiMI	CAYNNNNRTG	3 cut(s)	167, 633, 863
SspMI	CTAG	2 cut(s)	89, 524
StyD4I	CCNGG	5 cut(s)	513, 543, 740, 755, 775
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	2 cut(s)	608, 635
TaiI	ACGT	4 cut(s)	329, 503, 585, 678
TaqI	TCGA	9 cut(s)	152, 306, 321, 552, 585, 603, 716, 752, 816
TatI	WGTACW	1 cut(s)	342
TauI	GCSGC	3 cut(s)	50, 185, 279
TfiI	GAWTC	3 cut(s)	4, 201, 436
TscAI	CASTG	2 cut(s)	230, 640
TseFI	GTSAC	1 cut(s)	608
TseI	GCWGC	4 cut(s)	112, 246, 293, 427
Tsp45I	GTSAC	1 cut(s)	608
TspDTI	ATGAA	2 cut(s)	17, 449
TspGWI	ACGGA	1 cut(s)	803
TspRI	CASTG	2 cut(s)	230, 640
Tth111I	GACNNNGTC	2 cut(s)	545, 581
VpaK11BI	GGWCC	4 cut(s)	172, 622, 769, 855
XbaI	TCTAGA	1 cut(s)	523
XceI	RCATGY	1 cut(s)	44
XcmI	CCANNNNNNNNNTGG	2 cut(s)	635, 865
XmiI	GTMKAC	1 cut(s)	603
XmnI	GAANNNNTTC	1 cut(s)	722
XspI	CTAG	2 cut(s)	89, 524
ZraI	GACGTC	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.