Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026184.1

Orthogroup ID

OG0009869

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 319

Gene Structure 319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026184.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 217 bp

tggtagcaacaatagagtgaggaactataagcggctcgagccattggaccggacatttaaatcggaacggtgggttttttcgagggcaccatcatttctaacgaggatgttgtccattaagtcaccgaaggtgacggccaacgtgggcgagggaccttcggctcaacccaccgagccggtttttacgaggagcggctcggttcggccggcaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009737 GO:0009814 GO:0009816 GO:0009987 GO:0009991 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0042493 GO:0042742 GO:0043161 GO:0043170 GO:0043207 GO:0043412 GO:0043562 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071496 GO:0071704 GO:0071944 GO:0097305 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

71

Amino Acids

7.98

Weight (kDa)

11.5

Isoelectric Point (pI)

60.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05200 AT5G27420
fragaria_vesca	FvH4_6g05450
malus_domestica	MD04G1208600.v1.1 MD12G1222600.v1.1
prunus_persica	Prupe.6G329500_v2.0.a1
pyrus_communis	pycom04g18470 pycom12g20880
rosa_chinensis	RchiOBHm_Chr3g0454221
rosa_laevigata	RLG00000025475
rosa_multiflora	Rmu_sc0007628.1_g000006 Rmu_sc0026184.1_g000001 Rmu_sc0026185.1_g000001
rosa_roxburghii	Rroxscaffold_165G00437000 Rroxscaffold_6G00425360
rosa_rugosa	Rorug02G0653500
rosa_samantha	Rh3AG056800 Rh3BG058200 Rh3CG057400 Rh3DG058700
rosa_wichuraiana	Rw3G004370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	86
AccBSI	CCGCTC	1 cut(s)	193
AciI	CCGC	2 cut(s)	32, 193
AcoI	YGGCCR	2 cut(s)	136, 204
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	2 cut(s)	136, 204
AspS9I	GGNCC	2 cut(s)	47, 153
AsuHPI	GGTGA	2 cut(s)	115, 143
AvaI	CYCGRG	1 cut(s)	36
AvaII	GGWCC	2 cut(s)	47, 153
BaeGI	GKGCMC	1 cut(s)	89
BanI	GGYRCC	1 cut(s)	86
BccI	CCATC	1 cut(s)	98
BceAI	ACGGC	1 cut(s)	151
BisI	GCNGC	2 cut(s)	33, 194
BlsI	GCNGC	2 cut(s)	34, 195
Bme18I	GGWCC	2 cut(s)	47, 153
BmeT110I	CYCGRG	1 cut(s)	36
BmgT120I	GGNCC	2 cut(s)	47, 153
BmiI	GGNNCC	2 cut(s)	88, 154
BsaWI	WCCGGW	1 cut(s)	49
Bse118I	RCCGGY	2 cut(s)	176, 206
BseGI	GGATG	1 cut(s)	112
BseRI	GAGGAG	1 cut(s)	203
BseSI	GKGCMC	1 cut(s)	89
BseX3I	CGGCCG	1 cut(s)	204
Bsh1285I	CGRYCG	1 cut(s)	207
BshFI	GGCC	2 cut(s)	138, 206
BshNI	GGYRCC	1 cut(s)	86
BsiEI	CGRYCG	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	36
BsiSI	CCGG	3 cut(s)	50, 177, 207
BslFI	GGGAC	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	166
BsnI	GGCC	2 cut(s)	138, 206
BsoBI	CYCGRG	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	89
BspACI	CCGC	2 cut(s)	32, 193
BspANI	GGCC	2 cut(s)	138, 206
BspLI	GGNNCC	2 cut(s)	88, 154
BspT107I	GGYRCC	1 cut(s)	86
BsrBI	CCGCTC	1 cut(s)	193
BsrFI	RCCGGY	2 cut(s)	176, 206
BssAI	RCCGGY	2 cut(s)	176, 206
Bst4CI	ACNGT	1 cut(s)	70
BstC8I	GCNNGC	1 cut(s)	208
BstF5I	GGATG	1 cut(s)	112
BstMCI	CGRYCG	1 cut(s)	207
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstSLI	GKGCMC	1 cut(s)	89
BstZI	CGGCCG	1 cut(s)	204
BsuRI	GGCC	2 cut(s)	138, 206
BtsCI	GGATG	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	208
Cfr10I	RCCGGY	2 cut(s)	176, 206
Cfr13I	GGNCC	2 cut(s)	47, 153
CviJI	RGCY	7 cut(s)	35, 41, 138, 162, 176, 196, 206
CviKI_1	RGCY	7 cut(s)	35, 41, 138, 162, 176, 196, 206
DraI	TTTAAA	1 cut(s)	59
EaeI	YGGCCR	2 cut(s)	136, 204
EagI	CGGCCG	1 cut(s)	204
EclXI	CGGCCG	1 cut(s)	204
Eco47I	GGWCC	2 cut(s)	47, 153
Eco52I	CGGCCG	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	36
EcoO109I	RGGNCCY	1 cut(s)	153
FaiI	YATR	1 cut(s)	28
FaqI	GGGAC	1 cut(s)	166
Fnu4HI	GCNGC	2 cut(s)	33, 194
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	2 cut(s)	33, 194
GluI	GCNGC	2 cut(s)	33, 194
HaeIII	GGCC	2 cut(s)	138, 206
HapII	CCGG	3 cut(s)	50, 177, 207
HpaII	CCGG	3 cut(s)	50, 177, 207
HphI	GGTGA	2 cut(s)	115, 143
Hpy188I	TCNGA	1 cut(s)	65
HpyAV	CCTTC	2 cut(s)	122, 166
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4IV	ACGT	1 cut(s)	142
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpySE526I	ACGT	1 cut(s)	142
KroI	GCCGGC	1 cut(s)	206
KroNI	GCCGGC	1 cut(s)	208
LmnI	GCTCC	1 cut(s)	190
LpnPI	CCDG	2 cut(s)	63, 190
MaeII	ACGT	1 cut(s)	142
MaeIII	GTNAC	2 cut(s)	121, 131
MbiI	CCGCTC	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	89
MluCI	AATT	1 cut(s)	211
MnlI	CCTC	5 cut(s)	13, 76, 97, 143, 181
MroNI	GCCGGC	1 cut(s)	206
MseI	TTAA	3 cut(s)	58, 118, 215
MspI	CCGG	3 cut(s)	50, 177, 207
MwoI	GCNNNNNNNGC	1 cut(s)	38
NaeI	GCCGGC	1 cut(s)	208
NgoMIV	GCCGGC	1 cut(s)	206
NlaIV	GGNNCC	2 cut(s)	88, 154
NmuCI	GTSAC	2 cut(s)	121, 131
PaeR7I	CTCGAG	1 cut(s)	36
PdiI	GCCGGC	1 cut(s)	208
PkrI	GCNGC	2 cut(s)	34, 195
PpuMI	RGGWCCY	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	153
PspN4I	GGNNCC	2 cut(s)	88, 154
PspPI	GGNCC	2 cut(s)	47, 153
PspPPI	RGGWCCY	1 cut(s)	153
PspXI	VCTCGAGB	1 cut(s)	36
SaqAI	TTAA	3 cut(s)	58, 118, 215
SatI	GCNGC	2 cut(s)	33, 194
Sau96I	GGNCC	2 cut(s)	47, 153
SduI	GDGCHC	1 cut(s)	89
SetI	ASST	3 cut(s)	133, 145, 158
Sfr274I	CTCGAG	1 cut(s)	36
SinI	GGWCC	2 cut(s)	47, 153
SlaI	CTCGAG	1 cut(s)	36
SmiI	ATTTAAAT	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	36
SmoI	CTYRAG	1 cut(s)	36
Sse9I	AATT	1 cut(s)	211
SsiI	CCGC	2 cut(s)	32, 193
SwaI	ATTTAAAT	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	70
TaiI	ACGT	1 cut(s)	145
TaqI	TCGA	2 cut(s)	37, 81
TasI	AATT	1 cut(s)	211
TauI	GCSGC	2 cut(s)	35, 196
Tru1I	TTAA	3 cut(s)	58, 118, 215
Tru9I	TTAA	3 cut(s)	58, 118, 215
TseFI	GTSAC	2 cut(s)	121, 131
Tsp45I	GTSAC	2 cut(s)	121, 131
VpaK11BI	GGWCC	2 cut(s)	47, 153
XhoI	CTCGAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.