Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026185.1

Orthogroup ID

OG0009869

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 319

Gene Structure 319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026185.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 319 bp

ggtgagaaaacagatcatcaaccggaagctacaccggtccattagtgtgttggtgttgccgagagaagggagttcacggcgcggcccccgaatgggggacagtggtagcaacaatagagtgcggaactataagcggctcgagccattggaccggacatttaaatcggaacggtgggttttttcgagggcaccatcatttctaacgaggatgttgtccattaagtcaccgaaggtgacggccaacttgggcgagggaccttcggctcaacccaccgagccggtttttacgaggagcggctcggttcggccggcaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009737 GO:0009814 GO:0009816 GO:0009987 GO:0009991 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0042493 GO:0042742 GO:0043161 GO:0043170 GO:0043207 GO:0043412 GO:0043562 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071496 GO:0071704 GO:0071944 GO:0097305 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

105

Amino Acids

11.87

Weight (kDa)

11.9

Isoelectric Point (pI)

61.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05200 AT5G27420
fragaria_vesca	FvH4_6g05450
malus_domestica	MD04G1208600.v1.1 MD12G1222600.v1.1
prunus_persica	Prupe.6G329500_v2.0.a1
pyrus_communis	pycom04g18470 pycom12g20880
rosa_chinensis	RchiOBHm_Chr3g0454221
rosa_laevigata	RLG00000025475
rosa_multiflora	Rmu_sc0007628.1_g000006 Rmu_sc0026184.1_g000001 Rmu_sc0026185.1_g000001
rosa_roxburghii	Rroxscaffold_165G00437000 Rroxscaffold_6G00425360
rosa_rugosa	Rorug02G0653500
rosa_samantha	Rh3AG056800 Rh3BG058200 Rh3CG057400 Rh3DG058700
rosa_wichuraiana	Rw3G004370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	188
AccBSI	CCGCTC	1 cut(s)	295
AccII	CGCG	1 cut(s)	82
AciI	CCGC	4 cut(s)	82, 122, 134, 295
AcoI	YGGCCR	2 cut(s)	238, 306
AfiI	CCNNNNNNNGG	5 cut(s)	66, 92, 93, 94, 95
AgeI	ACCGGT	1 cut(s)	34
AluBI	AGCT	1 cut(s)	29
AluI	AGCT	1 cut(s)	29
Ama87I	CYCGRG	1 cut(s)	138
AoxI	GGCC	3 cut(s)	83, 238, 306
AsiGI	ACCGGT	1 cut(s)	34
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	4 cut(s)	37, 84, 149, 255
AsuHPI	GGTGA	3 cut(s)	14, 217, 245
AvaI	CYCGRG	1 cut(s)	138
AvaII	GGWCC	3 cut(s)	37, 149, 255
BaeGI	GKGCMC	1 cut(s)	191
BanI	GGYRCC	1 cut(s)	188
BccI	CCATC	1 cut(s)	200
BceAI	ACGGC	2 cut(s)	93, 253
BisI	GCNGC	3 cut(s)	83, 135, 296
BlsI	GCNGC	3 cut(s)	84, 136, 297
Bme18I	GGWCC	3 cut(s)	37, 149, 255
BmeT110I	CYCGRG	1 cut(s)	138
BmgT120I	GGNCC	4 cut(s)	37, 84, 149, 255
BmiI	GGNNCC	3 cut(s)	86, 190, 256
BsaWI	WCCGGW	3 cut(s)	22, 34, 151
Bsc4I	CCNNNNNNNGG	5 cut(s)	66, 92, 93, 94, 95
Bse118I	RCCGGY	3 cut(s)	34, 278, 308
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	5 cut(s)	66, 92, 93, 94, 95
BseRI	GAGGAG	1 cut(s)	305
BseSI	GKGCMC	1 cut(s)	191
BseX3I	CGGCCG	1 cut(s)	306
Bsh1236I	CGCG	1 cut(s)	82
Bsh1285I	CGRYCG	1 cut(s)	309
BshFI	GGCC	3 cut(s)	85, 240, 308
BshNI	GGYRCC	1 cut(s)	188
BshTI	ACCGGT	1 cut(s)	34
BsiEI	CGRYCG	1 cut(s)	309
BsiHKCI	CYCGRG	1 cut(s)	138
BsiSI	CCGG	5 cut(s)	23, 35, 152, 279, 309
BslFI	GGGAC	2 cut(s)	111, 268
BslI	CCNNNNNNNGG	5 cut(s)	66, 92, 93, 94, 95
BsmFI	GGGAC	2 cut(s)	111, 268
BsnI	GGCC	3 cut(s)	85, 240, 308
BsoBI	CYCGRG	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp143I	GATC	1 cut(s)	13
BspACI	CCGC	4 cut(s)	82, 122, 134, 295
BspANI	GGCC	3 cut(s)	85, 240, 308
BspFNI	CGCG	1 cut(s)	82
BspLI	GGNNCC	3 cut(s)	86, 190, 256
BspT107I	GGYRCC	1 cut(s)	188
BsrBI	CCGCTC	1 cut(s)	295
BsrFI	RCCGGY	3 cut(s)	34, 278, 308
BssAI	RCCGGY	3 cut(s)	34, 278, 308
BssMI	GATC	1 cut(s)	13
Bst4CI	ACNGT	2 cut(s)	102, 172
BstC8I	GCNNGC	1 cut(s)	310
BstF5I	GGATG	1 cut(s)	214
BstFNI	CGCG	1 cut(s)	82
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	1 cut(s)	16
BstMBI	GATC	1 cut(s)	13
BstMCI	CGRYCG	1 cut(s)	309
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstSLI	GKGCMC	1 cut(s)	191
BstUI	CGCG	1 cut(s)	82
BstZI	CGGCCG	1 cut(s)	306
BsuRI	GGCC	3 cut(s)	85, 240, 308
BtsCI	GGATG	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	107
Cac8I	GCNNGC	1 cut(s)	310
CfoI	GCGC	1 cut(s)	82
Cfr10I	RCCGGY	3 cut(s)	34, 278, 308
Cfr13I	GGNCC	4 cut(s)	37, 84, 149, 255
CspAI	ACCGGT	1 cut(s)	34
CviJI	RGCY	9 cut(s)	29, 85, 137, 143, 240, 264, 278, 298, 308
CviKI_1	RGCY	9 cut(s)	29, 85, 137, 143, 240, 264, 278, 298, 308
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
DraI	TTTAAA	1 cut(s)	161
EaeI	YGGCCR	2 cut(s)	238, 306
EagI	CGGCCG	1 cut(s)	306
EclXI	CGGCCG	1 cut(s)	306
Eco47I	GGWCC	3 cut(s)	37, 149, 255
Eco52I	CGGCCG	1 cut(s)	306
Eco88I	CYCGRG	1 cut(s)	138
EcoO109I	RGGNCCY	1 cut(s)	255
FaiI	YATR	1 cut(s)	130
FaqI	GGGAC	2 cut(s)	111, 268
Fnu4HI	GCNGC	3 cut(s)	83, 135, 296
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	3 cut(s)	83, 135, 296
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	3 cut(s)	83, 135, 296
HaeIII	GGCC	3 cut(s)	85, 240, 308
HapII	CCGG	5 cut(s)	23, 35, 152, 279, 309
HhaI	GCGC	1 cut(s)	82
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HpaII	CCGG	5 cut(s)	23, 35, 152, 279, 309
HphI	GGTGA	3 cut(s)	14, 217, 245
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188I	TCNGA	1 cut(s)	167
Hpy8I	GTNNAC	1 cut(s)	75
HpyAV	CCTTC	3 cut(s)	60, 224, 268
HpyCH4III	ACNGT	2 cut(s)	102, 172
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HspAI	GCGC	1 cut(s)	80
KroI	GCCGGC	1 cut(s)	308
KroNI	GCCGGC	1 cut(s)	310
Kzo9I	GATC	1 cut(s)	13
LmnI	GCTCC	1 cut(s)	292
LpnPI	CCDG	4 cut(s)	36, 48, 165, 292
MaeIII	GTNAC	2 cut(s)	223, 233
MalI	GATC	1 cut(s)	15
MbiI	CCGCTC	1 cut(s)	295
MboI	GATC	1 cut(s)	13
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	1 cut(s)	313
MnlI	CCTC	4 cut(s)	178, 199, 245, 283
MroNI	GCCGGC	1 cut(s)	308
MseI	TTAA	3 cut(s)	160, 220, 317
MslI	CAYNNNNRTG	1 cut(s)	45
MspI	CCGG	5 cut(s)	23, 35, 152, 279, 309
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	1 cut(s)	140
NaeI	GCCGGC	1 cut(s)	310
NdeII	GATC	1 cut(s)	13
NgoMIV	GCCGGC	1 cut(s)	308
NlaIV	GGNNCC	3 cut(s)	86, 190, 256
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	2 cut(s)	223, 233
PaeR7I	CTCGAG	1 cut(s)	138
PdiI	GCCGGC	1 cut(s)	310
PinAI	ACCGGT	1 cut(s)	34
PkrI	GCNGC	3 cut(s)	84, 136, 297
PpuMI	RGGWCCY	1 cut(s)	255
Psp5II	RGGWCCY	1 cut(s)	255
PspN4I	GGNNCC	3 cut(s)	86, 190, 256
PspPI	GGNCC	4 cut(s)	37, 84, 149, 255
PspPPI	RGGWCCY	1 cut(s)	255
PspXI	VCTCGAGB	1 cut(s)	138
RseI	CAYNNNNRTG	1 cut(s)	45
SaqAI	TTAA	3 cut(s)	160, 220, 317
SatI	GCNGC	3 cut(s)	83, 135, 296
Sau3AI	GATC	1 cut(s)	13
Sau96I	GGNCC	4 cut(s)	37, 84, 149, 255
SduI	GDGCHC	1 cut(s)	191
SetI	ASST	3 cut(s)	31, 235, 260
Sfr274I	CTCGAG	1 cut(s)	138
SinI	GGWCC	3 cut(s)	37, 149, 255
SlaI	CTCGAG	1 cut(s)	138
SmiI	ATTTAAAT	1 cut(s)	161
SmiMI	CAYNNNNRTG	1 cut(s)	45
SmlI	CTYRAG	1 cut(s)	138
SmoI	CTYRAG	1 cut(s)	138
Sse9I	AATT	1 cut(s)	313
SsiI	CCGC	4 cut(s)	82, 122, 134, 295
SwaI	ATTTAAAT	1 cut(s)	161
TaaI	ACNGT	2 cut(s)	102, 172
TaqI	TCGA	2 cut(s)	139, 183
TasI	AATT	1 cut(s)	313
TauI	GCSGC	3 cut(s)	85, 137, 298
Tru1I	TTAA	3 cut(s)	160, 220, 317
Tru9I	TTAA	3 cut(s)	160, 220, 317
TscAI	CASTG	1 cut(s)	107
TseFI	GTSAC	2 cut(s)	223, 233
Tsp45I	GTSAC	2 cut(s)	223, 233
TspRI	CASTG	1 cut(s)	107
VpaK11BI	GGWCC	3 cut(s)	37, 149, 255
XcmI	CCANNNNNNNNNTGG	1 cut(s)	47
XhoI	CTCGAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.