Rroxscaffold_165G00437000

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000165
Physical Location & Seq
Forward (+)
124285 .. 125070
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_165G00437000.1

Sequence Viewer

Length: 786 bp
ATGGCGGTCATCATCGTGGTCCTCGTCGCCGCCCTCTTCCTCATGGGCTTCTTCTCCATCTACATCCGCCACTGCTCCGAACCCCAGTCCGGCAGCGTACGCGCCGGAGGGACCATCACCGGCCGCTCCAGGCGCGGCGCTGCGCGTGGACTCGACTCCAGCGTCATCGACACGTTCCCGACCTTGGAGTACAAAGTCGTCAAGGGTTTGAAAATAGGTAAGGGAGCGTTGGAGTGCGCCGTGTGCTTGAACGAGTTTGAGGACGATGAGACGCTGCGTTTGATTCCCAAGTGCGATCATGTGTTTCATCCCGAGTGTATTGACGAGTGGTTGGCTTCTCATACTACGTGTCCGGTTTGCCGGGCCAATCTAGAGCCTCAGGCCGGTGACCCGGTCGTCGAACTCGGTGAGTTGACCGCCCATGACGACGTCGAAGCCCAACACGAGGTCGACTGTGACTCGGCACCGGACCACCACAGCAGTGATGGACAGCAGGAAGAATTGGAGCCTGAGGTAGTGAACGCGAACCAGACTTTGAATAGGAACCGCACGCGTGGAAGATCGAGCCGGTTCCGCCGGTTGTTTCCCCGGTCCCACTCGACCGGGCACTCTTTGGTCCAACCGGGCGAGGACACGGAGCGGTTCACTTTGAGACTACCGGTCGAGGTGAGAAAACAGATCATCAACCGGGAGCTACACCGGTCCACTAGTGTGTTGGTGTTGCCGAGAGAAGGAGTTCACGGCGCGGCCCCCGAATGGGGGACAGTGGTAGCAACAATAGAGTGA

Protein Analysis

261

Amino Acids

28.86

Weight (kDa)

5.65

Isoelectric Point (pI)

48.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 78 - 121 1.5e-14 Ring finger domain
zf-RING_11 PF17123 78 - 107 4.9e-10 RING-like zinc finger
zf-C3HC4_2 PF13923 78 - 120 6.6e-09 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 78 - 121 5.7e-06 zinc-RING finger domain
zf-C3HC4 PF00097 79 - 120 8.3e-07 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 82 - 121 6e-08 RING-H2 zinc finger domain
zf-ANAPC11 PF12861 87 - 124 1e-05 Anaphase-promoting complex subunit 11 RING-H2 finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 161, 395
AatII GACGTC 1 cut(s) 432
AccB1I GGYRCC 1 cut(s) 463
AccBSI CCGCTC 2 cut(s) 126, 640
AccI GTMKAC 1 cut(s) 450
AccII CGCG 6 cut(s) 102, 135, 145, 524, 553, 746
AcoI YGGCCR 1 cut(s) 121
AcyI GRCGYC 1 cut(s) 429
AfaI GTAC 2 cut(s) 99, 191
AfiI CCNNNNNNNGG 9 cut(s) 89, 184, 383, 445, 731, 756, 757, 758, 759
AflIII ACRYGT 3 cut(s) 171, 347, 551
AgeI ACCGGT 2 cut(s) 658, 699
AgsI TTSAA 3 cut(s) 211, 250, 538
AhdI GACNNNNNGTC 1 cut(s) 659
AhlI ACTAGT 1 cut(s) 707
AjnI CCWGG 1 cut(s) 128
AleI CACNNNNGTG 2 cut(s) 480, 710
AluBI AGCT 1 cut(s) 694
AluI AGCT 1 cut(s) 694
Alw26I GTCTC 2 cut(s) 263, 646
Ama87I CYCGRG 1 cut(s) 311
AoxI GGCC 4 cut(s) 121, 363, 381, 747
ApeKI GCWGC 3 cut(s) 93, 140, 274
ArsI GACNNNNNNTTYG 2 cut(s) 262, 294
AsiGI ACCGGT 2 cut(s) 658, 699
Asp700I GAANNNNTTC 1 cut(s) 735
AspLEI GCGC 6 cut(s) 104, 135, 140, 145, 239, 746
AspS9I GGNCC 8 cut(s) 19, 111, 363, 469, 591, 616, 702, 748
AsuC2I CCSGG 6 cut(s) 362, 392, 589, 604, 624, 689
AsuHPI GGTGA 4 cut(s) 109, 398, 419, 679
AvaI CYCGRG 1 cut(s) 311
AvaII GGWCC 6 cut(s) 19, 111, 469, 591, 616, 702
AxyI CCTNAGG 2 cut(s) 378, 510
BaeGI GKGCMC 1 cut(s) 609
BanI GGYRCC 1 cut(s) 463
BauI CACGAG 1 cut(s) 443
BbvI GCAGC 3 cut(s) 105, 127, 261
BccI CCATC 3 cut(s) 65, 122, 479
BceAI ACGGC 2 cut(s) 224, 757
BciT130I CCWGG 1 cut(s) 130
BcnI CCSGG 6 cut(s) 362, 392, 589, 604, 624, 689
BcoDI GTCTC 2 cut(s) 263, 646
BcuI ACTAGT 1 cut(s) 707
BfaI CTAG 2 cut(s) 371, 708
BfoI RGCGCY 1 cut(s) 141
BisI GCNGC 7 cut(s) 30, 94, 124, 136, 141, 275, 747
BlsI GCNGC 7 cut(s) 31, 95, 125, 137, 142, 276, 748
Bme1390I CCNGG 7 cut(s) 130, 362, 392, 589, 604, 624, 689
Bme18I GGWCC 6 cut(s) 19, 111, 469, 591, 616, 702
BmeRI GACNNNNNGTC 1 cut(s) 659
BmeT110I CYCGRG 1 cut(s) 311
BmgT120I GGNCC 8 cut(s) 19, 111, 363, 469, 591, 616, 702, 748
BmiI GGNNCC 7 cut(s) 112, 465, 507, 545, 572, 593, 750
BmrFI CCNGG 7 cut(s) 130, 362, 392, 589, 604, 624, 689
BmrI ACTGGG 1 cut(s) 79
BmuI ACTGGG 1 cut(s) 79
BpmI CTGGAG 2 cut(s) 112, 142
BpuMI CCSGG 6 cut(s) 362, 392, 589, 604, 624, 689
BsaAI YACGTR 1 cut(s) 348
BsaHI GRCGYC 1 cut(s) 429
BsaJI CCNNGG 2 cut(s) 183, 587
BsaWI WCCGGW 4 cut(s) 352, 466, 658, 699
Bsc4I CCNNNNNNNGG 9 cut(s) 89, 184, 383, 445, 731, 756, 757, 758, 759
Bse118I RCCGGY 6 cut(s) 119, 383, 567, 576, 658, 699
Bse1I ACTGG 1 cut(s) 85
Bse21I CCTNAGG 2 cut(s) 378, 510
BseBI CCWGG 1 cut(s) 130
BseDI CCNNGG 2 cut(s) 183, 587
BseGI GGATG 2 cut(s) 63, 307
BseLI CCNNNNNNNGG 9 cut(s) 89, 184, 383, 445, 731, 756, 757, 758, 759
BseMII CTCAG 2 cut(s) 392, 501
BseNI ACTGG 1 cut(s) 85
BseSI GKGCMC 1 cut(s) 609
BseX3I CGGCCG 1 cut(s) 121
BseXI GCAGC 3 cut(s) 105, 127, 261
Bsh1236I CGCG 6 cut(s) 102, 135, 145, 524, 553, 746
Bsh1285I CGRYCG 4 cut(s) 124, 396, 603, 663
BshFI GGCC 4 cut(s) 123, 365, 383, 749
BshNI GGYRCC 1 cut(s) 463
BshTI ACCGGT 2 cut(s) 658, 699
BsiEI CGRYCG 4 cut(s) 124, 396, 603, 663
BsiHKCI CYCGRG 1 cut(s) 311
BsiWI CGTACG 1 cut(s) 97
BslFI GGGAC 3 cut(s) 124, 577, 775
BslI CCNNNNNNNGG 9 cut(s) 89, 184, 383, 445, 731, 756, 757, 758, 759
BsmAI GTCTC 2 cut(s) 263, 646
BsmBI CGTCTC 1 cut(s) 263
BsmFI GGGAC 3 cut(s) 124, 577, 775
BsnI GGCC 4 cut(s) 123, 365, 383, 749
BsoBI CYCGRG 1 cut(s) 311
Bsp1286I GDGCHC 1 cut(s) 609
Bsp143I GATC 3 cut(s) 295, 560, 678
BspANI GGCC 4 cut(s) 123, 365, 383, 749
BspCNI CTCAG 2 cut(s) 391, 502
BspFNI CGCG 6 cut(s) 102, 135, 145, 524, 553, 746
BspLI GGNNCC 7 cut(s) 112, 465, 507, 545, 572, 593, 750
BspT107I GGYRCC 1 cut(s) 463
BsrBI CCGCTC 2 cut(s) 126, 640
BsrFI RCCGGY 6 cut(s) 119, 383, 567, 576, 658, 699
BsrI ACTGG 1 cut(s) 85
BssAI RCCGGY 6 cut(s) 119, 383, 567, 576, 658, 699
BssECI CCNNGG 2 cut(s) 183, 587
BssMI GATC 3 cut(s) 295, 560, 678
BssNI GRCGYC 1 cut(s) 429
BssSI CACGAG 1 cut(s) 443
BssT1I CCWWGG 1 cut(s) 183
Bst2BI CACGAG 1 cut(s) 443
Bst2UI CCWGG 1 cut(s) 130
Bst4CI ACNGT 2 cut(s) 455, 766
Bst6I CTCTTC 1 cut(s) 41
BstACI GRCGYC 1 cut(s) 429
BstBAI YACGTR 1 cut(s) 348
BstC8I GCNNGC 1 cut(s) 551
BstDEI CTNAG 2 cut(s) 378, 510
BstEII GGTNACC 1 cut(s) 386
BstF5I GGATG 2 cut(s) 63, 307
BstFNI CGCG 6 cut(s) 102, 135, 145, 524, 553, 746
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 6 cut(s) 104, 135, 140, 145, 239, 746
BstKTI GATC 3 cut(s) 298, 563, 681
BstMAI GTCTC 2 cut(s) 263, 646
BstMBI GATC 3 cut(s) 295, 560, 678
BstMCI CGRYCG 4 cut(s) 124, 396, 603, 663
BstMWI GCNNNNNNNGC 4 cut(s) 99, 132, 243, 573
BstNI CCWGG 1 cut(s) 130
BstPI GGTNACC 1 cut(s) 386
BstSCI CCNGG 7 cut(s) 128, 360, 390, 587, 602, 622, 687
BstSLI GKGCMC 1 cut(s) 609
BstUI CGCG 6 cut(s) 102, 135, 145, 524, 553, 746
BstV1I GCAGC 3 cut(s) 105, 127, 261
BstZI CGGCCG 1 cut(s) 121
Bsu36I CCTNAGG 2 cut(s) 378, 510
BsuRI GGCC 4 cut(s) 123, 365, 383, 749
BtsCI GGATG 2 cut(s) 63, 307
BtsI GCAGTG 2 cut(s) 70, 487
BtsIMutI CAGTG 3 cut(s) 70, 487, 771
Cac8I GCNNGC 1 cut(s) 551
CfoI GCGC 6 cut(s) 104, 135, 140, 145, 239, 746
Cfr10I RCCGGY 6 cut(s) 119, 383, 567, 576, 658, 699
Cfr13I GGNCC 8 cut(s) 19, 111, 363, 469, 591, 616, 702, 748
CseI GACGC 2 cut(s) 151, 280
Csp6I GTAC 2 cut(s) 98, 190
CspAI ACCGGT 2 cut(s) 658, 699
CviAII CATG 3 cut(s) 43, 299, 422
CviQI GTAC 2 cut(s) 98, 190
DdeI CTNAG 2 cut(s) 378, 510
DpnI GATC 3 cut(s) 297, 562, 680
DpnII GATC 3 cut(s) 295, 560, 678
DrdI GACNNNNNNGTC 2 cut(s) 161, 395
DriI GACNNNNNGTC 1 cut(s) 659
DseDI GACNNNNNNGTC 2 cut(s) 161, 395
EaeI YGGCCR 1 cut(s) 121
EagI CGGCCG 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 41
Eam1105I GACNNNNNGTC 1 cut(s) 659
EarI CTCTTC 1 cut(s) 41
EciI GGCGGA 2 cut(s) 56, 563
EclXI CGGCCG 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 183
Eco47I GGWCC 6 cut(s) 19, 111, 469, 591, 616, 702
Eco52I CGGCCG 1 cut(s) 121
Eco81I CCTNAGG 2 cut(s) 378, 510
Eco88I CYCGRG 1 cut(s) 311
Eco91I GGTNACC 1 cut(s) 386
EcoO65I GGTNACC 1 cut(s) 386
EcoRII CCWGG 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
Esp3I CGTCTC 1 cut(s) 263
FaeI CATG 3 cut(s) 46, 302, 425
FaiI YATR 4 cut(s) 44, 300, 342, 423
FaqI GGGAC 3 cut(s) 124, 577, 775
FatI CATG 3 cut(s) 42, 298, 421
FblI GTMKAC 1 cut(s) 450
Fnu4HI GCNGC 7 cut(s) 30, 94, 124, 136, 141, 275, 747
FokI GGATG 2 cut(s) 50, 294
Fsp4HI GCNGC 7 cut(s) 30, 94, 124, 136, 141, 275, 747
FspBI CTAG 2 cut(s) 371, 708
GlaI GCGC 6 cut(s) 103, 134, 139, 144, 238, 745
GluI GCNGC 7 cut(s) 30, 94, 124, 136, 141, 275, 747
GsuI CTGGAG 2 cut(s) 112, 142
HaeII RGCGCY 1 cut(s) 141
HaeIII GGCC 4 cut(s) 123, 365, 383, 749
HgaI GACGC 2 cut(s) 151, 280
HhaI GCGC 6 cut(s) 104, 135, 140, 145, 239, 746
Hin1I GRCGYC 1 cut(s) 429
Hin1II CATG 3 cut(s) 46, 302, 425
Hin6I GCGC 6 cut(s) 102, 133, 138, 143, 237, 744
HinP1I GCGC 6 cut(s) 102, 133, 138, 143, 237, 744
HincII GTYRAC 2 cut(s) 414, 451
HindII GTYRAC 2 cut(s) 414, 451
HinfI GANTC 4 cut(s) 150, 155, 283, 458
HphI GGTGA 4 cut(s) 109, 398, 419, 679
Hpy166II GTNNAC 7 cut(s) 149, 414, 451, 520, 645, 705, 739
Hpy188I TCNGA 1 cut(s) 79
Hpy188III TCNNGA 3 cut(s) 178, 311, 371
Hpy8I GTNNAC 7 cut(s) 149, 414, 451, 520, 645, 705, 739
Hpy99I CGWCG 4 cut(s) 29, 401, 431, 434
HpyAV CCTTC 1 cut(s) 725
HpyCH4III ACNGT 2 cut(s) 455, 766
HpyCH4IV ACGT 3 cut(s) 173, 347, 429
HpyF10VI GCNNNNNNNGC 4 cut(s) 99, 132, 243, 573
HpyF3I CTNAG 2 cut(s) 378, 510
HpySE526I ACGT 3 cut(s) 173, 347, 429
Hsp92I GRCGYC 1 cut(s) 429
Hsp92II CATG 3 cut(s) 46, 302, 425
HspAI GCGC 6 cut(s) 102, 133, 138, 143, 237, 744
Kzo9I GATC 3 cut(s) 295, 560, 678
LmnI GCTCC 6 cut(s) 80, 131, 224, 505, 637, 691
Lsp1109I GCAGC 3 cut(s) 105, 127, 261
MaeI CTAG 2 cut(s) 371, 708
MaeII ACGT 3 cut(s) 173, 347, 429
MaeIII GTNAC 2 cut(s) 386, 455
MalI GATC 3 cut(s) 297, 562, 680
MbiI CCGCTC 2 cut(s) 126, 640
MboI GATC 3 cut(s) 295, 560, 678
MboII GAAGA 4 cut(s) 28, 43, 509, 570
MhlI GDGCHC 1 cut(s) 609
MluCI AATT 1 cut(s) 500
MluI ACGCGT 1 cut(s) 551
MlyI GAGTC 3 cut(s) 144, 149, 452
MmeI TCCRAC 2 cut(s) 210, 643
MroXI GAANNNNTTC 1 cut(s) 735
MslI CAYNNNNRTG 3 cut(s) 14, 480, 710
MspR9I CCNGG 7 cut(s) 130, 362, 392, 589, 604, 624, 689
MteI GCGCNGCGC 2 cut(s) 136, 141
MvaI CCWGG 1 cut(s) 130
MvnI CGCG 6 cut(s) 102, 135, 145, 524, 553, 746
MwoI GCNNNNNNNGC 4 cut(s) 99, 132, 243, 573
NciI CCSGG 6 cut(s) 362, 392, 589, 604, 624, 689
NdeII GATC 3 cut(s) 295, 560, 678
NlaIII CATG 3 cut(s) 46, 302, 425
NlaIV GGNNCC 7 cut(s) 112, 465, 507, 545, 572, 593, 750
NmeAIII GCCGAG 2 cut(s) 440, 750
NmuCI GTSAC 2 cut(s) 386, 455
OliI CACNNNNGTG 2 cut(s) 480, 710
PcsI WCGNNNNNNNCGW 2 cut(s) 21, 159
PdmI GAANNNNTTC 1 cut(s) 735
PfeI GAWTC 1 cut(s) 283
Pfl23II CGTACG 1 cut(s) 97
PflFI GACNNNGTC 2 cut(s) 392, 428
PinAI ACCGGT 2 cut(s) 658, 699
PkrI GCNGC 7 cut(s) 31, 95, 125, 137, 142, 276, 748
PleI GAGTC 3 cut(s) 144, 149, 452
PpsI GAGTC 3 cut(s) 144, 149, 452
Ppu21I YACGTR 1 cut(s) 348
Psp6I CCWGG 1 cut(s) 128
PspEI GGTNACC 1 cut(s) 386
PspGI CCWGG 1 cut(s) 128
PspLI CGTACG 1 cut(s) 97
PspN4I GGNNCC 7 cut(s) 112, 465, 507, 545, 572, 593, 750
PspPI GGNCC 8 cut(s) 19, 111, 363, 469, 591, 616, 702, 748
PsyI GACNNNGTC 2 cut(s) 392, 428
RsaI GTAC 2 cut(s) 99, 191
RsaNI GTAC 2 cut(s) 98, 190
RseI CAYNNNNRTG 3 cut(s) 14, 480, 710
SalI GTCGAC 1 cut(s) 449
SatI GCNGC 7 cut(s) 30, 94, 124, 136, 141, 275, 747
Sau3AI GATC 3 cut(s) 295, 560, 678
Sau96I GGNCC 8 cut(s) 19, 111, 363, 469, 591, 616, 702, 748
SchI GAGTC 3 cut(s) 144, 149, 452
ScrFI CCNGG 7 cut(s) 130, 362, 392, 589, 604, 624, 689
SduI GDGCHC 1 cut(s) 609
SetI ASST 9 cut(s) 176, 185, 220, 350, 432, 450, 516, 669, 696
SinI GGWCC 6 cut(s) 19, 111, 469, 591, 616, 702
SmiMI CAYNNNNRTG 3 cut(s) 14, 480, 710
SpeI ACTAGT 1 cut(s) 707
Sse9I AATT 1 cut(s) 500
SspMI CTAG 2 cut(s) 371, 708
StyD4I CCNGG 7 cut(s) 128, 360, 390, 587, 602, 622, 687
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 2 cut(s) 455, 766
TaiI ACGT 3 cut(s) 176, 350, 432
TaqI TCGA 8 cut(s) 153, 168, 399, 432, 450, 563, 599, 663
TasI AATT 1 cut(s) 500
TatI WGTACW 1 cut(s) 189
TauI GCSGC 4 cut(s) 32, 126, 138, 749
TfiI GAWTC 1 cut(s) 283
TscAI CASTG 3 cut(s) 77, 487, 771
TseFI GTSAC 2 cut(s) 386, 455
TseI GCWGC 3 cut(s) 93, 140, 274
Tsp45I GTSAC 2 cut(s) 386, 455
TspDTI ATGAA 1 cut(s) 296
TspGWI ACGGA 1 cut(s) 650
TspRI CASTG 3 cut(s) 77, 487, 771
Tth111I GACNNNGTC 2 cut(s) 392, 428
VpaK11BI GGWCC 6 cut(s) 19, 111, 469, 591, 616, 702
XbaI TCTAGA 1 cut(s) 370
XcmI CCANNNNNNNNNTGG 2 cut(s) 482, 712
XmiI GTMKAC 1 cut(s) 450
XmnI GAANNNNTTC 1 cut(s) 735
XspI CTAG 2 cut(s) 371, 708
ZraI GACGTC 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.