Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008190.1

Orthogroup ID

OG0001664

Physical Location & Seq

Genomic Coordinates Forward (+)

797 .. 1468

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008190.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atgaagaaacccgcaaacgacgccgttatgaccaacccactcgacctcttcacggaggagatcatccacgcgatcctcgaccacctaaacgaagacccgttctccaaaaagtccttctccttgtgctgcaagtcgttctacttcatcgagtcccgccaccgcaagtccctcactcccctccgctccgagctcctcaaccgcgccctccaccgctacccctccatctcgcgtctcaacctcactctctgcccgcgcgtcagcgacgccaccctcgcatccgtcgccgccacgtggcgggcgacgctccgttcgatcaacctctcgcgctcccgggacttcagcggcattgggctgcgtgttttgtcggggagctgttcgggtctggtggagattgacgtgtcgaacgggacggagctgacggacacggcggcgaaggcgatcgccgaggcgaagaatctggagaagttgcggatggcgaggtgtaagttgattagtgacatagggattgggtgtatagccgttggatgtaagaagctgaaggtgctgtgcttgaggtggtgcttacgtgtcacggatttgggcgttggattggtcgctgtgaagtgcaagcagctgaggagtttggatctctcttgtttgccggtaattgttagcctttttggagcgatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

223

Amino Acids

24.5

Weight (kDa)

9.37

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01720
fragaria_vesca	FvH4_3g39860 FvH4_3g39860 FvH4_3g39860 FvH4_3g39860 FvH4_3g39860 FvH4_3g39860 FvH4_3g39860 FvH4_6g10500 FvH4_6g10500 FvH4_6g10500 FvH4_6g10500 FvH4_6g10500
malus_domestica	MD04G1167900.v1.1 MD11G1060100.v1.1 MD12G1181200.v1.1
prunus_persica	Prupe.6G046600_v2.0.a1 Prupe.6G046600_v2.0.a1 Prupe.6G046600_v2.0.a1 Prupe.6G046600_v2.0.a1 Prupe.6G286100_v2.0.a1 Prupe.6G286100_v2.0.a1
pyrus_communis	pycom11g04970
rosa_chinensis	RchiOBHm_Chr3g0461461 RchiOBHm_Chr5g0071821
rosa_laevigata	RLG00000024932 RLG00000036254
rosa_multiflora	Rmu_co8377769.1_g000001 Rmu_sc0002677.1_g000006 Rmu_sc0008190.1_g000001 Rmu_sc0015603.1_g000012 Rmu_ssc0000127.1_g000066
rosa_roxburghii	Rroxscaffold_1G00009310 Rroxscaffold_6G00418260 Rroxscaffold_6G00418590
rosa_rugosa	Rorug03G0050900 Rorug05G0414800 Rorug05G0414900 Rorug05G0415000
rosa_samantha	Rh3AG108700 Rh3BG112500 Rh3CG114100 Rh3DG114200 Rh5AG471100 Rh5BG490800 Rh5CG514800 Rh5DG502300
rosa_wichuraiana	Rw3G009240 Rw5G043780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	183
AccII	CGCG	6 cut(s)	71, 201, 229, 253, 255, 325
AclWI	GGATC	2 cut(s)	67, 633
AcuI	CTGAAG	2 cut(s)	322, 557
AcvI	CACGTG	1 cut(s)	291
AcyI	GRCGYC	2 cut(s)	21, 264
AfiI	CCNNNNNNNGG	3 cut(s)	52, 291, 294
AflIII	ACRYGT	2 cut(s)	396, 565
AjiI	CACGTC	1 cut(s)	397
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
AluBI	AGCT	5 cut(s)	190, 372, 415, 535, 613
AluI	AGCT	5 cut(s)	190, 372, 415, 535, 613
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	236
AlwI	GGATC	2 cut(s)	67, 633
Ama87I	CYCGRG	1 cut(s)	330
ApeKI	GCWGC	3 cut(s)	126, 352, 610
ArsI	GACNNNNNNTTYG	2 cut(s)	292, 324
AsiSI	GCGATCGC	1 cut(s)	441
AspLEI	GCGC	3 cut(s)	203, 255, 327
AsuC2I	CCSGG	2 cut(s)	331, 332
AvaI	CYCGRG	1 cut(s)	330
BanII	GRGCYC	1 cut(s)	192
BbrPI	CACGTG	1 cut(s)	291
BbsI	GAAGAC	1 cut(s)	99
Bbv12I	GWGCWC	1 cut(s)	192
BbvCI	CCTCAGC	1 cut(s)	614
BbvI	GCAGC	3 cut(s)	113, 339, 622
BccI	CCATC	2 cut(s)	230, 466
BceAI	ACGGC	3 cut(s)	8, 441, 503
BcnI	CCSGG	2 cut(s)	331, 332
BcoDI	GTCTC	1 cut(s)	236
BisI	GCNGC	6 cut(s)	127, 285, 343, 353, 429, 611
BlsI	GCNGC	6 cut(s)	128, 286, 344, 354, 430, 612
Bme1390I	CCNGG	2 cut(s)	331, 332
BmeT110I	CYCGRG	1 cut(s)	330
BmgBI	CACGTC	1 cut(s)	397
BmrFI	CCNGG	2 cut(s)	331, 332
BmsI	GCATC	1 cut(s)	284
BpiI	GAAGAC	1 cut(s)	99
BpmI	CTGGAG	1 cut(s)	479
Bpu10I	CCTNAGC	1 cut(s)	614
BpuEI	CTTGAG	1 cut(s)	571
BpuMI	CCSGG	2 cut(s)	331, 332
BsaAI	YACGTR	2 cut(s)	291, 566
BsaHI	GRCGYC	2 cut(s)	21, 264
BsaJI	CCNNGG	2 cut(s)	330, 444
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 291, 294
Bse118I	RCCGGY	1 cut(s)	640
BseDI	CCNNGG	2 cut(s)	330, 444
BseGI	GGATG	4 cut(s)	63, 275, 477, 530
BseLI	CCNNNNNNNGG	3 cut(s)	52, 291, 294
BseMII	CTCAG	1 cut(s)	605
BseRI	GAGGAG	3 cut(s)	71, 182, 631
BseXI	GCAGC	3 cut(s)	113, 339, 622
Bsh1236I	CGCG	6 cut(s)	71, 201, 229, 253, 255, 325
Bsh1285I	CGRYCG	1 cut(s)	441
BsiEI	CGRYCG	1 cut(s)	441
BsiHKAI	GWGCWC	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	330
BsiSI	CCGG	2 cut(s)	331, 641
BslFI	GGGAC	4 cut(s)	136, 151, 347, 421
BslI	CCNNNNNNNGG	3 cut(s)	52, 291, 294
BsmAI	GTCTC	1 cut(s)	236
BsmBI	CGTCTC	1 cut(s)	236
BsmFI	GGGAC	4 cut(s)	136, 151, 347, 421
BsoBI	CYCGRG	1 cut(s)	330
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	5 cut(s)	60, 72, 312, 438, 625
BspCNI	CTCAG	1 cut(s)	606
BspFNI	CGCG	6 cut(s)	71, 201, 229, 253, 255, 325
BspPI	GGATC	2 cut(s)	67, 633
BsrBI	CCGCTC	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	640
BssAI	RCCGGY	1 cut(s)	640
BssECI	CCNNGG	2 cut(s)	330, 444
BssMI	GATC	5 cut(s)	60, 72, 312, 438, 625
BssNI	GRCGYC	2 cut(s)	21, 264
Bst6I	CTCTTC	1 cut(s)	53
BstACI	GRCGYC	2 cut(s)	21, 264
BstBAI	YACGTR	2 cut(s)	291, 566
BstC8I	GCNNGC	3 cut(s)	251, 297, 608
BstDEI	CTNAG	1 cut(s)	614
BstF5I	GGATG	4 cut(s)	63, 275, 477, 530
BstFNI	CGCG	6 cut(s)	71, 201, 229, 253, 255, 325
BstHHI	GCGC	3 cut(s)	203, 255, 327
BstKTI	GATC	5 cut(s)	63, 75, 315, 441, 628
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	5 cut(s)	60, 72, 312, 438, 625
BstMCI	CGRYCG	1 cut(s)	441
BstMWI	GCNNNNNNNGC	6 cut(s)	20, 272, 281, 301, 434, 541
BstSCI	CCNGG	2 cut(s)	329, 330
BstUI	CGCG	6 cut(s)	71, 201, 229, 253, 255, 325
BstV1I	GCAGC	3 cut(s)	113, 339, 622
BstV2I	GAAGAC	1 cut(s)	99
BstX2I	RGATCY	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	625
BtrI	CACGTC	1 cut(s)	397
BtsCI	GGATG	4 cut(s)	63, 275, 477, 530
Cac8I	GCNNGC	3 cut(s)	251, 297, 608
CfoI	GCGC	3 cut(s)	203, 255, 327
Cfr10I	RCCGGY	1 cut(s)	640
Cfr9I	CCCGGG	1 cut(s)	330
CseI	GACGC	5 cut(s)	29, 218, 244, 272, 310
CviJI	RGCY	8 cut(s)	190, 352, 372, 415, 518, 535, 613, 654
CviKI_1	RGCY	8 cut(s)	190, 352, 372, 415, 518, 535, 613, 654
DdeI	CTNAG	1 cut(s)	614
DpnI	GATC	5 cut(s)	62, 74, 314, 440, 627
DpnII	GATC	5 cut(s)	60, 72, 312, 438, 625
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Ecl136II	GAGCTC	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	192
Eco53kI	GAGCTC	1 cut(s)	190
Eco57I	CTGAAG	2 cut(s)	322, 557
Eco72I	CACGTG	1 cut(s)	291
Eco88I	CYCGRG	1 cut(s)	330
EcoICRI	GAGCTC	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	192
Esp3I	CGTCTC	1 cut(s)	236
FaiI	YATR	3 cut(s)	29, 500, 515
FaqI	GGGAC	4 cut(s)	136, 151, 347, 421
FauI	CCCGC	4 cut(s)	19, 161, 258, 288
Fnu4HI	GCNGC	6 cut(s)	127, 285, 343, 353, 429, 611
FokI	GGATG	4 cut(s)	50, 262, 484, 537
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	6 cut(s)	127, 285, 343, 353, 429, 611
GlaI	GCGC	3 cut(s)	202, 254, 326
GluI	GCNGC	6 cut(s)	127, 285, 343, 353, 429, 611
GsuI	CTGGAG	1 cut(s)	479
HapII	CCGG	2 cut(s)	331, 641
HgaI	GACGC	5 cut(s)	29, 218, 244, 272, 310
HhaI	GCGC	3 cut(s)	203, 255, 327
Hin1I	GRCGYC	2 cut(s)	21, 264
Hin6I	GCGC	3 cut(s)	201, 253, 325
HinP1I	GCGC	3 cut(s)	201, 253, 325
HinfI	GANTC	2 cut(s)	149, 454
HpaII	CCGG	2 cut(s)	331, 641
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	1 cut(s)	458
Hpy99I	CGWCG	4 cut(s)	23, 266, 284, 304
HpyAV	CCTTC	3 cut(s)	124, 427, 532
HpyCH4IV	ACGT	3 cut(s)	290, 396, 565
HpyCH4V	TGCA	2 cut(s)	129, 606
HpyF10VI	GCNNNNNNNGC	6 cut(s)	20, 272, 281, 301, 434, 541
HpyF3I	CTNAG	1 cut(s)	614
HpySE526I	ACGT	3 cut(s)	290, 396, 565
Hsp92I	GRCGYC	2 cut(s)	21, 264
HspAI	GCGC	3 cut(s)	201, 253, 325
Kzo9I	GATC	5 cut(s)	60, 72, 312, 438, 625
LmnI	GCTCC	7 cut(s)	188, 195, 309, 332, 369, 412, 662
LpnPI	CCDG	4 cut(s)	344, 368, 443, 654
Lsp1109I	GCAGC	3 cut(s)	113, 339, 622
LweI	GCATC	1 cut(s)	284
MaeII	ACGT	3 cut(s)	290, 396, 565
MaeIII	GTNAC	2 cut(s)	494, 568
MalI	GATC	5 cut(s)	62, 74, 314, 440, 627
MbiI	CCGCTC	1 cut(s)	183
MboI	GATC	5 cut(s)	60, 72, 312, 438, 625
MboII	GAAGA	4 cut(s)	16, 40, 104, 463
MflI	RGATCY	1 cut(s)	625
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	1 cut(s)	645
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	2 cut(s)	502, 565
MspA1I	CMGCKG	2 cut(s)	342, 613
MspI	CCGG	2 cut(s)	331, 641
MspR9I	CCNGG	2 cut(s)	331, 332
MvnI	CGCG	6 cut(s)	71, 201, 229, 253, 255, 325
MwoI	GCNNNNNNNGC	6 cut(s)	20, 272, 281, 301, 434, 541
NciI	CCSGG	2 cut(s)	331, 332
NdeII	GATC	5 cut(s)	60, 72, 312, 438, 625
NmeAIII	GCCGAG	1 cut(s)	469
NmuCI	GTSAC	2 cut(s)	494, 568
PcsI	WCGNNNNNNNCGW	3 cut(s)	75, 296, 308
PfeI	GAWTC	1 cut(s)	454
PkrI	GCNGC	6 cut(s)	128, 286, 344, 354, 430, 612
Ple19I	CGATCG	1 cut(s)	441
PleI	GAGTC	1 cut(s)	157
PmaCI	CACGTG	1 cut(s)	291
PmlI	CACGTG	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	157
Ppu21I	YACGTR	2 cut(s)	291, 566
Psp124BI	GAGCTC	1 cut(s)	192
PspCI	CACGTG	1 cut(s)	291
PsuI	RGATCY	1 cut(s)	625
PvuI	CGATCG	1 cut(s)	441
PvuII	CAGCTG	1 cut(s)	613
RgaI	GCGATCGC	1 cut(s)	441
SacI	GAGCTC	1 cut(s)	192
SatI	GCNGC	6 cut(s)	127, 285, 343, 353, 429, 611
Sau3AI	GATC	5 cut(s)	60, 72, 312, 438, 625
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	2 cut(s)	331, 332
SduI	GDGCHC	1 cut(s)	192
SfaAI	GCGATCGC	1 cut(s)	441
SfaNI	GCATC	1 cut(s)	284
SgfI	GCGATCGC	1 cut(s)	441
SmaI	CCCGGG	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	550
SmoI	CTYRAG	1 cut(s)	550
Sse9I	AATT	1 cut(s)	645
SstI	GAGCTC	1 cut(s)	192
StyD4I	CCNGG	2 cut(s)	329, 330
TaiI	ACGT	3 cut(s)	293, 399, 568
TaqI	TCGA	5 cut(s)	42, 78, 147, 311, 401
TasI	AATT	1 cut(s)	645
TauI	GCSGC	3 cut(s)	287, 345, 431
TfiI	GAWTC	1 cut(s)	454
TseFI	GTSAC	2 cut(s)	494, 568
TseI	GCWGC	3 cut(s)	126, 352, 610
Tsp45I	GTSAC	2 cut(s)	494, 568
TspDTI	ATGAA	2 cut(s)	17, 133
TspGWI	ACGGA	6 cut(s)	68, 268, 296, 425, 434, 587
TspMI	CCCGGG	1 cut(s)	330
XmaI	CCCGGG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.