Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001664

Physical Location & Seq

Genomic Coordinates Forward (+)

57472625 .. 57473742

Gene Structure 1118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0415000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGATTGTTAATTGGCTCCCAAATTCTTTCCCTAGATGCCCTTCTTCCCCTCCTCCAAGAGATGCTCCAACAGAAGTAGTGGAGTTAATTGATCCTTACACAATGAAATGGGATGTTGAGAAGCTTAATCAGTGGTTCACCTCGACTGATAGAGATTTGATTCTAAGTATACCTCTGAGTCATAGAGCTTGGAATGACAAGTTAGTTTGGCATTTTCACAAGAAAAGATATATTGGTTACATGACTTGTTTAATGTGTGATAATGATGTGGAGAATGGTGTCCATTTGTTCACCCAATGTCCCTATACAAGGGAAGTGTGGGAGGCTGCCAATATATCATTGCCAACGTTGGCAATTTCAGATTTGAAGGATGGACTTCTGGAGTTATCTAGAGTGCTCAATAAGGAGCAATTTGCACAAGCTCTTATGCTAACATGGTCAATGTGGACTAATCGTAACTCTCAATTATGGGAAGGTAAGAAACATCATCCTACTGAAGCTGCTTTGTTAGCCATGAGTTGGTTTAATGAATTTTCAAAGGCAAATGACAAAGGCACAACACCACGTGCTCAAAGAAAAGAGTGGTCTACTCTAGCAGATGATTGGCTTAAATGCAATAGTGATGGATCTTTTCTTGCTTCATGTAATAGAGGTGGTTCAGGGGTTGTATTCCGTGATACTACAAGAGCTTTCAAAGTGGCAGCGATGCGACAATTTGATCAGATAGCGATAGCTGTGAACTTGGGAACGCGCGTGCACGCGCCTTTGAGAAAAAAACCCAACCTATCAAGACGTCTTTCCAATCGCCGCTCTCCACGACCTCTAGACCAAGTGAAAAAAGAACCGGAAGTATCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

286

Amino Acids

33.01

Weight (kDa)

9.33

Isoelectric Point (pI)

35.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01720
fragaria_vesca	FvH4_3g39860 FvH4_3g39860 FvH4_3g39860 FvH4_3g39860 FvH4_3g39860 FvH4_3g39860 FvH4_3g39860 FvH4_6g10500 FvH4_6g10500 FvH4_6g10500 FvH4_6g10500 FvH4_6g10500
malus_domestica	MD04G1167900.v1.1 MD11G1060100.v1.1 MD12G1181200.v1.1
prunus_persica	Prupe.6G046600_v2.0.a1 Prupe.6G046600_v2.0.a1 Prupe.6G046600_v2.0.a1 Prupe.6G046600_v2.0.a1 Prupe.6G286100_v2.0.a1 Prupe.6G286100_v2.0.a1
pyrus_communis	pycom11g04970
rosa_chinensis	RchiOBHm_Chr3g0461461 RchiOBHm_Chr5g0071821
rosa_laevigata	RLG00000024932 RLG00000036254
rosa_multiflora	Rmu_co8377769.1_g000001 Rmu_sc0002677.1_g000006 Rmu_sc0008190.1_g000001 Rmu_sc0015603.1_g000012 Rmu_ssc0000127.1_g000066
rosa_roxburghii	Rroxscaffold_1G00009310 Rroxscaffold_6G00418260 Rroxscaffold_6G00418590
rosa_rugosa	Rorug03G0050900 Rorug05G0414800 Rorug05G0414900 Rorug05G0415000
rosa_samantha	Rh3AG108700 Rh3BG112500 Rh3CG114100 Rh3DG114200 Rh5AG471100 Rh5BG490800 Rh5CG514800 Rh5DG502300
rosa_wichuraiana	Rw3G009240 Rw5G043780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	796
AccB7I	CCANNNNNTGG	1 cut(s)	519
AccBSI	CCGCTC	1 cut(s)	810
AccI	GTMKAC	2 cut(s)	169, 587
AccII	CGCG	3 cut(s)	751, 753, 761
AciI	CCGC	1 cut(s)	808
AclI	AACGTT	1 cut(s)	347
AclWI	GGATC	2 cut(s)	86, 634
AcsI	RAATTY	2 cut(s)	22, 530
AcuI	CTGAAG	1 cut(s)	516
AcvI	CACGTG	1 cut(s)	566
AcyI	GRCGYC	1 cut(s)	793
AdeI	CACNNNGTG	1 cut(s)	566
AfiI	CCNNNNNNNGG	2 cut(s)	309, 519
AgsI	TTSAA	3 cut(s)	367, 537, 694
AluBI	AGCT	6 cut(s)	124, 188, 422, 500, 689, 734
AluI	AGCT	6 cut(s)	124, 188, 422, 500, 689, 734
Alw21I	GWGCWC	3 cut(s)	399, 571, 759
Alw44I	GTGCAC	1 cut(s)	755
AlwI	GGATC	2 cut(s)	86, 634
ApaLI	GTGCAC	1 cut(s)	755
ApeKI	GCWGC	3 cut(s)	326, 500, 701
ApoI	RAATTY	2 cut(s)	22, 530
AspLEI	GCGC	2 cut(s)	753, 763
AsuHPI	GGTGA	2 cut(s)	130, 283
BaeGI	GKGCMC	1 cut(s)	759
BbrPI	CACGTG	1 cut(s)	566
Bbv12I	GWGCWC	3 cut(s)	399, 571, 759
BbvI	GCAGC	3 cut(s)	313, 487, 713
BccI	CCATC	2 cut(s)	365, 617
BclI	TGATCA	1 cut(s)	718
BfaI	CTAG	4 cut(s)	33, 390, 593, 824
BisI	GCNGC	4 cut(s)	327, 501, 702, 808
BlsI	GCNGC	4 cut(s)	328, 502, 703, 809
BmiI	GGNNCC	1 cut(s)	17
BmsI	GCATC	3 cut(s)	26, 52, 696
BpmI	CTGGAG	1 cut(s)	401
BsaAI	YACGTR	1 cut(s)	566
BsaHI	GRCGYC	1 cut(s)	793
BsaWI	WCCGGW	1 cut(s)	844
Bsc4I	CCNNNNNNNGG	2 cut(s)	309, 519
Bse3DI	GCAATG	1 cut(s)	338
BseGI	GGATG	3 cut(s)	118, 376, 487
BseLI	CCNNNNNNNGG	2 cut(s)	309, 519
BseMI	GCAATG	1 cut(s)	338
BseMII	CTCAG	1 cut(s)	167
BseRI	GAGGAG	1 cut(s)	42
BseSI	GKGCMC	1 cut(s)	759
BseXI	GCAGC	3 cut(s)	313, 487, 713
Bsh1236I	CGCG	3 cut(s)	751, 753, 761
BsiHKAI	GWGCWC	3 cut(s)	399, 571, 759
BsiSI	CCGG	1 cut(s)	845
BslFI	GGGAC	1 cut(s)	285
BslI	CCNNNNNNNGG	2 cut(s)	309, 519
BsmFI	GGGAC	1 cut(s)	285
Bsp1286I	GDGCHC	3 cut(s)	399, 571, 759
Bsp143I	GATC	3 cut(s)	91, 626, 718
BspACI	CCGC	1 cut(s)	808
BspCNI	CTCAG	1 cut(s)	168
BspFNI	CGCG	3 cut(s)	751, 753, 761
BspLI	GGNNCC	1 cut(s)	17
BspPI	GGATC	2 cut(s)	86, 634
BsrBI	CCGCTC	1 cut(s)	810
BsrDI	GCAATG	1 cut(s)	338
BssMI	GATC	3 cut(s)	91, 626, 718
BssNAI	GTATAC	1 cut(s)	170
BssNI	GRCGYC	1 cut(s)	793
Bst1107I	GTATAC	1 cut(s)	170
BstACI	GRCGYC	1 cut(s)	793
BstBAI	YACGTR	1 cut(s)	566
BstC8I	GCNNGC	2 cut(s)	755, 759
BstDEI	CTNAG	2 cut(s)	164, 176
BstENI	CCTNNNNNAGG	1 cut(s)	307
BstF5I	GGATG	3 cut(s)	118, 376, 487
BstFNI	CGCG	3 cut(s)	751, 753, 761
BstHHI	GCGC	2 cut(s)	753, 763
BstKTI	GATC	3 cut(s)	94, 629, 721
BstMBI	GATC	3 cut(s)	91, 626, 718
BstMWI	GCNNNNNNNGC	1 cut(s)	509
BstSLI	GKGCMC	1 cut(s)	759
BstUI	CGCG	3 cut(s)	751, 753, 761
BstV1I	GCAGC	3 cut(s)	313, 487, 713
BstX2I	RGATCY	1 cut(s)	626
BstYI	RGATCY	1 cut(s)	626
BstZ17I	GTATAC	1 cut(s)	170
BtgZI	GCGATG	1 cut(s)	719
BtsCI	GGATG	3 cut(s)	118, 376, 487
BtsIMutI	CAGTG	1 cut(s)	137
Cac8I	GCNNGC	2 cut(s)	755, 759
CfoI	GCGC	2 cut(s)	753, 763
CviAII	CATG	4 cut(s)	241, 435, 514, 642
DdeI	CTNAG	2 cut(s)	164, 176
DpnI	GATC	3 cut(s)	93, 628, 720
DpnII	GATC	3 cut(s)	91, 626, 718
DraIII	CACNNNGTG	1 cut(s)	566
Eco57I	CTGAAG	1 cut(s)	516
Eco72I	CACGTG	1 cut(s)	566
EcoNI	CCTNNNNNAGG	1 cut(s)	307
FaeI	CATG	4 cut(s)	244, 438, 517, 645
FaqI	GGGAC	1 cut(s)	285
FatI	CATG	4 cut(s)	240, 434, 513, 641
FbaI	TGATCA	1 cut(s)	718
FblI	GTMKAC	2 cut(s)	169, 587
Fnu4HI	GCNGC	4 cut(s)	327, 501, 702, 808
FokI	GGATG	3 cut(s)	125, 383, 474
Fsp4HI	GCNGC	4 cut(s)	327, 501, 702, 808
FspBI	CTAG	4 cut(s)	33, 390, 593, 824
GlaI	GCGC	2 cut(s)	752, 762
GluI	GCNGC	4 cut(s)	327, 501, 702, 808
GsuI	CTGGAG	1 cut(s)	401
HapII	CCGG	1 cut(s)	845
HhaI	GCGC	2 cut(s)	753, 763
Hin1I	GRCGYC	1 cut(s)	793
Hin1II	CATG	4 cut(s)	244, 438, 517, 645
Hin6I	GCGC	2 cut(s)	751, 761
HinP1I	GCGC	2 cut(s)	751, 761
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	2 cut(s)	160, 178
HpaII	CCGG	1 cut(s)	845
HphI	GGTGA	2 cut(s)	130, 283
Hpy166II	GTNNAC	7 cut(s)	138, 170, 291, 447, 588, 739, 757
Hpy188I	TCNGA	3 cut(s)	177, 361, 723
Hpy188III	TCNNGA	5 cut(s)	380, 390, 789, 824, 855
Hpy8I	GTNNAC	7 cut(s)	138, 170, 291, 447, 588, 739, 757
HpyAV	CCTTC	3 cut(s)	51, 361, 467
HpyCH4IV	ACGT	3 cut(s)	347, 565, 793
HpyCH4V	TGCA	3 cut(s)	416, 615, 757
HpyF10VI	GCNNNNNNNGC	1 cut(s)	509
HpyF3I	CTNAG	2 cut(s)	164, 176
HpySE526I	ACGT	3 cut(s)	347, 565, 793
Hsp92I	GRCGYC	1 cut(s)	793
Hsp92II	CATG	4 cut(s)	244, 438, 517, 645
HspAI	GCGC	2 cut(s)	751, 761
Ksp22I	TGATCA	1 cut(s)	718
Kzo9I	GATC	3 cut(s)	91, 626, 718
LmnI	GCTCC	3 cut(s)	21, 70, 406
LpnPI	CCDG	2 cut(s)	365, 645
Lsp1109I	GCAGC	3 cut(s)	313, 487, 713
LweI	GCATC	3 cut(s)	26, 52, 696
MaeI	CTAG	4 cut(s)	33, 390, 593, 824
MaeII	ACGT	3 cut(s)	347, 565, 793
MaeIII	GTNAC	2 cut(s)	236, 455
MalI	GATC	3 cut(s)	93, 628, 720
MbiI	CCGCTC	1 cut(s)	810
MboI	GATC	3 cut(s)	91, 626, 718
MboII	GAAGA	1 cut(s)	36
MflI	RGATCY	1 cut(s)	626
MhlI	GDGCHC	3 cut(s)	399, 571, 759
MluCI	AATT	8 cut(s)	10, 22, 87, 354, 410, 464, 530, 713
MlyI	GAGTC	1 cut(s)	187
MmeI	TCCRAC	1 cut(s)	92
MnlI	CCTC	7 cut(s)	60, 63, 151, 183, 316, 644, 831
MseI	TTAA	6 cut(s)	9, 86, 126, 251, 525, 609
MspI	CCGG	1 cut(s)	845
MvnI	CGCG	3 cut(s)	751, 753, 761
MwoI	GCNNNNNNNGC	1 cut(s)	509
NdeII	GATC	3 cut(s)	91, 626, 718
NlaIII	CATG	4 cut(s)	244, 438, 517, 645
NlaIV	GGNNCC	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	160
PflMI	CCANNNNNTGG	1 cut(s)	519
PkrI	GCNGC	4 cut(s)	328, 502, 703, 809
PleI	GAGTC	1 cut(s)	186
PmaCI	CACGTG	1 cut(s)	566
PmlI	CACGTG	1 cut(s)	566
PpsI	GAGTC	1 cut(s)	186
Ppu21I	YACGTR	1 cut(s)	566
Psp1406I	AACGTT	1 cut(s)	347
PspCI	CACGTG	1 cut(s)	566
PspN4I	GGNNCC	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	626
SaqAI	TTAA	6 cut(s)	9, 86, 126, 251, 525, 609
SatI	GCNGC	4 cut(s)	327, 501, 702, 808
Sau3AI	GATC	3 cut(s)	91, 626, 718
SchI	GAGTC	1 cut(s)	187
SduI	GDGCHC	3 cut(s)	399, 571, 759
SfaNI	GCATC	3 cut(s)	26, 52, 696
Sse9I	AATT	8 cut(s)	10, 22, 87, 354, 410, 464, 530, 713
SsiI	CCGC	1 cut(s)	808
SspMI	CTAG	4 cut(s)	33, 390, 593, 824
TaiI	ACGT	3 cut(s)	350, 568, 796
TaqI	TCGA	1 cut(s)	143
TasI	AATT	8 cut(s)	10, 22, 87, 354, 410, 464, 530, 713
TauI	GCSGC	1 cut(s)	810
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	6 cut(s)	9, 86, 126, 251, 525, 609
Tru9I	TTAA	6 cut(s)	9, 86, 126, 251, 525, 609
TscAI	CASTG	1 cut(s)	137
TseI	GCWGC	3 cut(s)	326, 500, 701
TspDTI	ATGAA	3 cut(s)	119, 543, 630
TspGWI	ACGGA	1 cut(s)	662
TspRI	CASTG	1 cut(s)	137
Van91I	CCANNNNNTGG	1 cut(s)	519
VneI	GTGCAC	1 cut(s)	755
XagI	CCTNNNNNAGG	1 cut(s)	307
XapI	RAATTY	2 cut(s)	22, 530
XbaI	TCTAGA	2 cut(s)	389, 823
XmiI	GTMKAC	2 cut(s)	169, 587
XspI	CTAG	4 cut(s)	33, 390, 593, 824
ZraI	GACGTC	1 cut(s)	794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.