Rmu_sc0015603.1_g000012

F-box LRR-repeat protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015603.1
OG0001664
Physical Location & Seq
Forward (+)
44957 .. 46939
1983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015603.1_g000012.1.cds

Sequence Viewer

Length: 1293 bp
atgaagaaacccgcaaacgacgccgttatgaccaacccactcgacctcttcacggaggagatcatccacgcgatcctcgaccacctaaacgaagacccgttctccaaaaagtccttctccttgtgctgcaagtcgttctacttcatcgagtcccgccaccgcaagtccctcactcccctccgctccgagctcctcaaccgcgccctccaccgctacccctccatctcgcgtctcaacctcactctctgcccgcgcgtcagcgacgccaccctcgcatccgtcgccgccacgtggcgggcgacgctccgttcgatcaacctctcgcgctcccgggacttcagcggcattgggctgcgtgttttgtcggggagctgttcgggtctggtggagattgacgtgtcgaacgggacggagctgacggacacggcggcgaaggcgatcgccgaggcgaagaatctggagaagttgcggatggcgaggtgtaagttgattagtgacatagggattgggtgtatagccgttggatgtaagaagctgaaggtgctgtgcttgaggtggtgcttacgtgtcacggatttgggcgttggattggtcgctgtgaagtgcaagcagctgaggagtttggatctctcttgtttgccgatcacggaaaaatgtcttccacctatcctgcaactgcaacatcttgaggatttggttcttgaaggatgccttggaattgatgatgatggccttgttagccttaagcatagttgcagctcgctcaagatgcttaatttgtcgaaatgtcagaatgttagtcatgtgggtttgtcttctctgacaaatggtgctgacaacctagagcagcttatcctatcatatggtccttctgtcaccactgacctggggaaatgcctccttaattattcgagattgaaatcgattagactagatggttgtttggtcacatgttctgggactaaagcaataggaagttggtgtgcctcgttgagagagctgagcttaagtaaatgcactggagtgacagatgagtgcctctccttccttgtgcaagcgcataggcaattgctgaaactagacatcatctgctgccgcaaaataacttcggtcgctatagattgcataacaaagtcttgcatattcctcacttccctgaggatggaatcctgtagcctggtttctaaagacgcattcctgttgattggacagcgttgccaattcttggaggaattggatgtcacagataacgaaattgatgatgaaggttttgatttgaacttaacattctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

430

Amino Acids

47.24

Weight (kDa)

8.06

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1225
AccBSI CCGCTC 1 cut(s) 183
AccII CGCG 6 cut(s) 71, 201, 229, 253, 255, 325
AclWI GGATC 2 cut(s) 67, 633
AcuI CTGAAG 2 cut(s) 322, 557
AcvI CACGTG 1 cut(s) 291
AcyI GRCGYC 2 cut(s) 21, 264
AfiI CCNNNNNNNGG 5 cut(s) 52, 291, 294, 1162, 1225
AflII CTTAAG 2 cut(s) 743, 1006
AflIII ACRYGT 3 cut(s) 396, 565, 950
AgsI TTSAA 3 cut(s) 704, 919, 1279
AjiI CACGTC 1 cut(s) 397
AjnI CCWGG 2 cut(s) 885, 1176
AjuI GAANNNNNNNTTGG 4 cut(s) 98, 130, 696, 728
AleI CACNNNNGTG 1 cut(s) 1022
AluBI AGCT 9 cut(s) 190, 372, 415, 535, 613, 759, 850, 1000, 1005
AluI AGCT 9 cut(s) 190, 372, 415, 535, 613, 759, 850, 1000, 1005
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 1 cut(s) 236
AlwI GGATC 2 cut(s) 67, 633
Ama87I CYCGRG 1 cut(s) 330
AoxI GGCC 1 cut(s) 730
ApeKI GCWGC 6 cut(s) 126, 352, 610, 756, 847, 1092
ArsI GACNNNNNNTTYG 2 cut(s) 292, 324
AsiSI GCGATCGC 1 cut(s) 441
AspLEI GCGC 4 cut(s) 203, 255, 327, 1060
AspS9I GGNCC 1 cut(s) 866
AsuC2I CCSGG 2 cut(s) 331, 332
AsuHPI GGTGA 1 cut(s) 868
AvaI CYCGRG 1 cut(s) 330
AvaII GGWCC 1 cut(s) 866
AxyI CCTNAGG 1 cut(s) 1157
BanII GRGCYC 1 cut(s) 192
BbrPI CACGTG 1 cut(s) 291
BbsI GAAGAC 3 cut(s) 99, 650, 807
Bbv12I GWGCWC 1 cut(s) 192
BbvCI CCTCAGC 1 cut(s) 614
BbvI GCAGC 6 cut(s) 113, 339, 622, 768, 859, 1079
BccI CCATC 5 cut(s) 230, 466, 722, 929, 1156
BceAI ACGGC 3 cut(s) 8, 441, 503
BciT130I CCWGG 2 cut(s) 887, 1178
BcnI CCSGG 2 cut(s) 331, 332
BcoDI GTCTC 1 cut(s) 236
BfaI CTAG 3 cut(s) 842, 932, 1079
BfmI CTRYAG 2 cut(s) 1116, 1171
BfrI CTTAAG 2 cut(s) 743, 1006
BlpI GCTNAGC 1 cut(s) 1001
Bme1390I CCNGG 4 cut(s) 331, 332, 887, 1178
Bme18I GGWCC 1 cut(s) 866
BmeT110I CYCGRG 1 cut(s) 330
BmgBI CACGTC 1 cut(s) 397
BmgT120I GGNCC 1 cut(s) 866
BmrFI CCNGG 4 cut(s) 331, 332, 887, 1178
BmsI GCATC 3 cut(s) 284, 698, 759
BpiI GAAGAC 3 cut(s) 99, 650, 807
BplI GAGNNNNNCTC 2 cut(s) 1025, 1057
BpmI CTGGAG 2 cut(s) 479, 1041
Bpu10I CCTNAGC 1 cut(s) 614
Bpu1102I GCTNAGC 1 cut(s) 1001
BpuEI CTTGAG 3 cut(s) 571, 707, 749
BpuMI CCSGG 2 cut(s) 331, 332
Bsa29I ATCGAT 1 cut(s) 923
BsaAI YACGTR 2 cut(s) 291, 566
BsaBI GATNNNNATC 1 cut(s) 919
BsaHI GRCGYC 2 cut(s) 21, 264
BsaJI CCNNGG 4 cut(s) 330, 444, 712, 886
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 5 cut(s) 52, 291, 294, 1162, 1225
Bse1I ACTGG 1 cut(s) 1024
Bse21I CCTNAGG 1 cut(s) 1157
Bse8I GATNNNNATC 1 cut(s) 919
BseBI CCWGG 2 cut(s) 887, 1178
BseCI ATCGAT 1 cut(s) 923
BseDI CCNNGG 4 cut(s) 330, 444, 712, 886
BseGI GGATG 7 cut(s) 63, 275, 477, 530, 713, 1167, 1243
BseJI GATNNNNATC 1 cut(s) 919
BseLI CCNNNNNNNGG 5 cut(s) 52, 291, 294, 1162, 1225
BseMII CTCAG 3 cut(s) 605, 992, 1148
BseNI ACTGG 1 cut(s) 1024
BseRI GAGGAG 3 cut(s) 71, 182, 631
BseXI GCAGC 6 cut(s) 113, 339, 622, 768, 859, 1079
Bsh1236I CGCG 6 cut(s) 71, 201, 229, 253, 255, 325
Bsh1285I CGRYCG 2 cut(s) 441, 1113
BshFI GGCC 1 cut(s) 732
BshVI ATCGAT 1 cut(s) 923
BsiEI CGRYCG 2 cut(s) 441, 1113
BsiHKAI GWGCWC 1 cut(s) 192
BsiHKCI CYCGRG 1 cut(s) 330
BsiSI CCGG 1 cut(s) 331
BslFI GGGAC 5 cut(s) 136, 151, 347, 421, 973
BslI CCNNNNNNNGG 5 cut(s) 52, 291, 294, 1162, 1225
BsmAI GTCTC 1 cut(s) 236
BsmBI CGTCTC 1 cut(s) 236
BsmFI GGGAC 5 cut(s) 136, 151, 347, 421, 973
BsmI GAATGC 1 cut(s) 1193
BsnI GGCC 1 cut(s) 732
BsoBI CYCGRG 1 cut(s) 330
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 6 cut(s) 60, 72, 312, 438, 625, 642
Bsp1720I GCTNAGC 1 cut(s) 1001
BspANI GGCC 1 cut(s) 732
BspCNI CTCAG 3 cut(s) 606, 993, 1149
BspDI ATCGAT 1 cut(s) 923
BspFNI CGCG 6 cut(s) 71, 201, 229, 253, 255, 325
BspPI GGATC 2 cut(s) 67, 633
BspTI CTTAAG 2 cut(s) 743, 1006
BsrBI CCGCTC 1 cut(s) 183
BsrI ACTGG 1 cut(s) 1024
BssECI CCNNGG 4 cut(s) 330, 444, 712, 886
BssMI GATC 6 cut(s) 60, 72, 312, 438, 625, 642
BssNI GRCGYC 2 cut(s) 21, 264
BssT1I CCWWGG 1 cut(s) 712
Bst2UI CCWGG 2 cut(s) 887, 1178
Bst6I CTCTTC 1 cut(s) 53
BstACI GRCGYC 2 cut(s) 21, 264
BstAFI CTTAAG 2 cut(s) 743, 1006
BstBAI YACGTR 2 cut(s) 291, 566
BstC8I GCNNGC 5 cut(s) 251, 297, 608, 761, 1056
BstDEI CTNAG 3 cut(s) 614, 1001, 1157
BstF5I GGATG 7 cut(s) 63, 275, 477, 530, 713, 1167, 1243
BstFNI CGCG 6 cut(s) 71, 201, 229, 253, 255, 325
BstHHI GCGC 4 cut(s) 203, 255, 327, 1060
BstKTI GATC 6 cut(s) 63, 75, 315, 441, 628, 645
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 6 cut(s) 60, 72, 312, 438, 625, 642
BstMCI CGRYCG 2 cut(s) 441, 1113
BstMWI GCNNNNNNNGC 8 cut(s) 20, 272, 281, 301, 434, 541, 738, 769
BstNI CCWGG 2 cut(s) 887, 1178
BstNSI RCATGY 1 cut(s) 954
BstSCI CCNGG 4 cut(s) 329, 330, 885, 1176
BstSFI CTRYAG 2 cut(s) 1116, 1171
BstUI CGCG 6 cut(s) 71, 201, 229, 253, 255, 325
BstV1I GCAGC 6 cut(s) 113, 339, 622, 768, 859, 1079
BstV2I GAAGAC 3 cut(s) 99, 650, 807
BstX2I RGATCY 1 cut(s) 625
BstXI CCANNNNNNTGG 1 cut(s) 886
BstYI RGATCY 1 cut(s) 625
Bsu15I ATCGAT 1 cut(s) 923
Bsu36I CCTNAGG 1 cut(s) 1157
BsuRI GGCC 1 cut(s) 732
BsuTUI ATCGAT 1 cut(s) 923
BtrI CACGTC 1 cut(s) 397
BtsCI GGATG 7 cut(s) 63, 275, 477, 530, 713, 1167, 1243
BtsIMutI CAGTG 2 cut(s) 879, 1017
Cac8I GCNNGC 5 cut(s) 251, 297, 608, 761, 1056
CfoI GCGC 4 cut(s) 203, 255, 327, 1060
Cfr13I GGNCC 1 cut(s) 866
Cfr9I CCCGGG 1 cut(s) 330
ClaI ATCGAT 1 cut(s) 923
CseI GACGC 6 cut(s) 29, 218, 244, 272, 310, 1199
CviAII CATG 2 cut(s) 803, 951
DdeI CTNAG 3 cut(s) 614, 1001, 1157
DpnI GATC 6 cut(s) 62, 74, 314, 440, 627, 644
DpnII GATC 6 cut(s) 60, 72, 312, 438, 625, 642
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Ecl136II GAGCTC 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 712
Eco24I GRGCYC 1 cut(s) 192
Eco47I GGWCC 1 cut(s) 866
Eco53kI GAGCTC 1 cut(s) 190
Eco57I CTGAAG 2 cut(s) 322, 557
Eco72I CACGTG 1 cut(s) 291
Eco81I CCTNAGG 1 cut(s) 1157
Eco88I CYCGRG 1 cut(s) 330
EcoICRI GAGCTC 1 cut(s) 190
EcoRII CCWGG 2 cut(s) 885, 1176
EcoT14I CCWWGG 1 cut(s) 712
EcoT38I GRGCYC 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 712
Esp3I CGTCTC 1 cut(s) 236
FaeI CATG 2 cut(s) 806, 954
FalI AAGNNNNNCTT 2 cut(s) 696, 728
FaqI GGGAC 5 cut(s) 136, 151, 347, 421, 973
FatI CATG 2 cut(s) 802, 950
FauI CCCGC 4 cut(s) 19, 161, 258, 288
FauNDI CATATG 1 cut(s) 862
FokI GGATG 7 cut(s) 50, 262, 484, 537, 720, 1174, 1250
FriOI GRGCYC 1 cut(s) 192
FspBI CTAG 3 cut(s) 842, 932, 1079
GlaI GCGC 4 cut(s) 202, 254, 326, 1059
GsuI CTGGAG 2 cut(s) 479, 1041
HaeIII GGCC 1 cut(s) 732
HapII CCGG 1 cut(s) 331
HgaI GACGC 6 cut(s) 29, 218, 244, 272, 310, 1199
HhaI GCGC 4 cut(s) 203, 255, 327, 1060
Hin1I GRCGYC 2 cut(s) 21, 264
Hin1II CATG 2 cut(s) 806, 954
Hin6I GCGC 4 cut(s) 201, 253, 325, 1058
HinP1I GCGC 4 cut(s) 201, 253, 325, 1058
HinfI GANTC 3 cut(s) 149, 454, 1166
HpaII CCGG 1 cut(s) 331
HphI GGTGA 1 cut(s) 868
Hpy188I TCNGA 3 cut(s) 187, 792, 822
Hpy188III TCNNGA 5 cut(s) 458, 686, 701, 766, 912
Hpy99I CGWCG 4 cut(s) 23, 266, 284, 304
HpyAV CCTTC 7 cut(s) 124, 427, 532, 698, 879, 1054, 1259
HpyCH4IV ACGT 3 cut(s) 290, 396, 565
HpyCH4V TGCA 9 cut(s) 129, 606, 673, 679, 756, 1017, 1054, 1125, 1140
HpyF10VI GCNNNNNNNGC 8 cut(s) 20, 272, 281, 301, 434, 541, 738, 769
HpyF3I CTNAG 3 cut(s) 614, 1001, 1157
HpySE526I ACGT 3 cut(s) 290, 396, 565
Hsp92I GRCGYC 2 cut(s) 21, 264
Hsp92II CATG 2 cut(s) 806, 954
HspAI GCGC 4 cut(s) 201, 253, 325, 1058
Kzo9I GATC 6 cut(s) 60, 72, 312, 438, 625, 642
LmnI GCTCC 6 cut(s) 188, 195, 309, 332, 369, 412
Lsp1109I GCAGC 6 cut(s) 113, 339, 622, 768, 859, 1079
LweI GCATC 3 cut(s) 284, 698, 759
MaeI CTAG 3 cut(s) 842, 932, 1079
MaeII ACGT 3 cut(s) 290, 396, 565
MaeIII GTNAC 6 cut(s) 494, 568, 874, 946, 1024, 1240
MalI GATC 6 cut(s) 62, 74, 314, 440, 627, 644
MbiI CCGCTC 1 cut(s) 183
MboI GATC 6 cut(s) 60, 72, 312, 438, 625, 642
MboII GAAGA 6 cut(s) 16, 40, 104, 463, 650, 807
MfeI CAATTG 1 cut(s) 1067
MflI RGATCY 1 cut(s) 625
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 7 cut(s) 717, 775, 904, 1067, 1220, 1232, 1254
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 2 cut(s) 502, 565
MseI TTAA 5 cut(s) 744, 774, 903, 1007, 1283
MslI CAYNNNNRTG 1 cut(s) 1022
MspA1I CMGCKG 2 cut(s) 342, 613
MspCI CTTAAG 2 cut(s) 743, 1006
MspI CCGG 1 cut(s) 331
MspR9I CCNGG 4 cut(s) 331, 332, 887, 1178
MunI CAATTG 1 cut(s) 1067
Mva1269I GAATGC 1 cut(s) 1193
MvaI CCWGG 2 cut(s) 887, 1178
MvnI CGCG 6 cut(s) 71, 201, 229, 253, 255, 325
MwoI GCNNNNNNNGC 8 cut(s) 20, 272, 281, 301, 434, 541, 738, 769
NciI CCSGG 2 cut(s) 331, 332
NdeI CATATG 1 cut(s) 862
NdeII GATC 6 cut(s) 60, 72, 312, 438, 625, 642
NlaIII CATG 2 cut(s) 806, 954
NmeAIII GCCGAG 1 cut(s) 469
NmuCI GTSAC 6 cut(s) 494, 568, 874, 946, 1024, 1240
NspI RCATGY 1 cut(s) 954
OliI CACNNNNGTG 1 cut(s) 1022
PciI ACATGT 1 cut(s) 950
PcsI WCGNNNNNNNCGW 3 cut(s) 75, 296, 308
PctI GAATGC 1 cut(s) 1193
PfeI GAWTC 2 cut(s) 454, 1166
PflMI CCANNNNNTGG 1 cut(s) 1225
Ple19I CGATCG 1 cut(s) 441
PleI GAGTC 1 cut(s) 157
PmaCI CACGTG 1 cut(s) 291
PmlI CACGTG 1 cut(s) 291
PpsI GAGTC 1 cut(s) 157
Ppu21I YACGTR 2 cut(s) 291, 566
PscI ACATGT 1 cut(s) 950
Psp124BI GAGCTC 1 cut(s) 192
Psp6I CCWGG 2 cut(s) 885, 1176
PspCI CACGTG 1 cut(s) 291
PspGI CCWGG 2 cut(s) 885, 1176
PspPI GGNCC 1 cut(s) 866
PsuI RGATCY 1 cut(s) 625
PvuI CGATCG 1 cut(s) 441
PvuII CAGCTG 1 cut(s) 613
RgaI GCGATCGC 1 cut(s) 441
RseI CAYNNNNRTG 1 cut(s) 1022
SacI GAGCTC 1 cut(s) 192
SaqAI TTAA 5 cut(s) 744, 774, 903, 1007, 1283
Sau3AI GATC 6 cut(s) 60, 72, 312, 438, 625, 642
Sau96I GGNCC 1 cut(s) 866
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 4 cut(s) 331, 332, 887, 1178
SduI GDGCHC 1 cut(s) 192
SfaAI GCGATCGC 1 cut(s) 441
SfaNI GCATC 3 cut(s) 284, 698, 759
SfcI CTRYAG 2 cut(s) 1116, 1171
SgfI GCGATCGC 1 cut(s) 441
SinI GGWCC 1 cut(s) 866
SmaI CCCGGG 1 cut(s) 332
SmiMI CAYNNNNRTG 1 cut(s) 1022
SmlI CTYRAG 5 cut(s) 550, 686, 743, 764, 1006
SmoI CTYRAG 5 cut(s) 550, 686, 743, 764, 1006
Sse9I AATT 7 cut(s) 717, 775, 904, 1067, 1220, 1232, 1254
SspMI CTAG 3 cut(s) 842, 932, 1079
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 4 cut(s) 329, 330, 885, 1176
StyI CCWWGG 1 cut(s) 712
TaiI ACGT 3 cut(s) 293, 399, 568
TaqI TCGA 8 cut(s) 42, 78, 147, 311, 401, 782, 911, 923
TaqII GACCGA 1 cut(s) 1099
TasI AATT 7 cut(s) 717, 775, 904, 1067, 1220, 1232, 1254
TauI GCSGC 4 cut(s) 287, 345, 431, 1098
TfiI GAWTC 2 cut(s) 454, 1166
Tru1I TTAA 5 cut(s) 744, 774, 903, 1007, 1283
Tru9I TTAA 5 cut(s) 744, 774, 903, 1007, 1283
TscAI CASTG 2 cut(s) 886, 1024
TseFI GTSAC 6 cut(s) 494, 568, 874, 946, 1024, 1240
TseI GCWGC 6 cut(s) 126, 352, 610, 756, 847, 1092
Tsp45I GTSAC 6 cut(s) 494, 568, 874, 946, 1024, 1240
TspDTI ATGAA 3 cut(s) 17, 133, 1278
TspGWI ACGGA 7 cut(s) 68, 268, 296, 425, 434, 587, 662
TspMI CCCGGG 1 cut(s) 330
TspRI CASTG 2 cut(s) 886, 1024
Van91I CCANNNNNTGG 1 cut(s) 1225
Vha464I CTTAAG 2 cut(s) 743, 1006
VpaK11BI GGWCC 1 cut(s) 866
XceI RCATGY 1 cut(s) 954
XmaI CCCGGG 1 cut(s) 330
XspI CTAG 3 cut(s) 842, 932, 1079
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.