Rroxscaffold_6G00418590

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001664
Physical Location & Seq
Reverse (-)
40142738 .. 40146607
3870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00418590.1

Sequence Viewer

Length: 1221 bp
ATGGCAGCAATAACAACAACAAAAAAACTCAAACGCTCTTCTTCCCTTCAATCCATGAAGAGCCAAAAGGCCATTTTGAACACCAACACCAACACCAACTTCTTCCATTTCCTCTCAGATGAACTCATCTTCATAATCCTGGACTTCCTCACCCCAAACCCAATTGACAGAAAGTCCTTCTCTCTAGTCTGCAAGTCCTTCTACTCCCTAGAATCCAAACACCGCCGCACCCTGACCCCTCTCCGCTCCGAGCACCTCCCCACAATCCTGACCCGGTACCCATCTGTCACCCGCGTCGATCTCACGCTCTGCCCTCGGATCACAGACGCTTCCCTCATCGCAATCTCAAATGCGTGCAAGTCCAACCTCCAAAGCATCGATCTTTCCCGGTCCAAGTACTTCTCCGGAGCCGGGCTACAGAGCCTGGCCTTGAATTGCAAGAATATGGTGGAGATTGACTTATCCAATGCGACGGAGCTCCGAGACTCGGCCGCTGCGGCTCTGGCCGAGGCCAAGAACTTGGAGAGGCTCTGGTTGGGAAGGTGCAAGATGATTACGGACATGGGTGTGGGGTGTATAGCGGTTGGTTGTAGGAAGATGAAATTGATTAGCTTAAAATGGTGCCTCGGTGTTGGTGACTTGGGAATTGAGTTGCTTGCCCTCAAGTGTAAAGATCTTCAAAGTTTGGATCTGTCTTACCTGCCGATCACAGAAAAATGTTTACACTCGATCTTCAAGTTACCGCATCTTGAGGATTTGGTTCTAGAAGGATGCTTTGGCATCGATGATGACAGCCTTGCAGCCCTCAAACATGGGTGCAAGTCGCTAAAGAAGCTTGACATATCAAGTTGTCAGAACATTAGTCATAATGGTTTGGCTTCCCTAACTAGTGGTGGAGTTCTAGAGCAACTCGTATTGTCCCATGGCTCTCCTGTGACTCTTGCTCTTGCTGATAGTTTGAAAAAGCTACCGATGTTGCAGTCAATCAAATTAGATGGTTGCTCGATTACTTATGCTGGACTGCAAGCAATTGGAAACTGGTGTGTGTCATTAAGGGAGCTGAGCTTAAGTAAATGTCCTGGGGTGACAGATGAGGGGCTCTCCCTCCCTTTTGACAAAACACAAAGATCTGCGGAAGTTAGACATCACGTGTTGCCGAATGATAACTTATACTTCCATAGATCATATTACGTTATCATGCACCGCACTCACTTCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

406

Amino Acids

44.83

Weight (kDa)

8.85

Isoelectric Point (pI)

45.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 102 - 204 3.5e-07 Leucine Rich Repeat Domain of unknown function (DUF7885)
DUF7885 PF25372 222 - 301 3.1e-07 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 708
Acc65I GGTACC 1 cut(s) 276
AccB1I GGYRCC 2 cut(s) 276, 621
AccBSI CCGCTC 1 cut(s) 246
AccII CGCG 1 cut(s) 294
AccIII TCCGGA 1 cut(s) 404
AclWI GGATC 2 cut(s) 326, 696
AcoI YGGCCR 2 cut(s) 489, 504
AcvI CACGTG 1 cut(s) 1150
AfaI GTAC 2 cut(s) 278, 398
AfiI CCNNNNNNNGG 2 cut(s) 411, 487
AflII CTTAAG 1 cut(s) 1066
AflIII ACRYGT 1 cut(s) 1149
AgsI TTSAA 6 cut(s) 50, 79, 433, 680, 736, 961
AhdI GACNNNNNGTC 1 cut(s) 172
AhlI ACTAGT 1 cut(s) 887
AjnI CCWGG 3 cut(s) 138, 423, 1078
AjuI GAANNNNNNNTTGG 4 cut(s) 83, 115, 759, 791
AluBI AGCT 6 cut(s) 478, 612, 835, 967, 1060, 1065
AluI AGCT 6 cut(s) 478, 612, 835, 967, 1060, 1065
Alw21I GWGCWC 2 cut(s) 255, 480
Alw26I GTCTC 1 cut(s) 477
AlwI GGATC 2 cut(s) 326, 696
AlwNI CAGNNNCTG 1 cut(s) 424
Aor13HI TCCGGA 1 cut(s) 404
AoxI GGCC 5 cut(s) 69, 426, 489, 504, 510
ApeKI GCWGC 3 cut(s) 5, 494, 800
Asp718I GGTACC 1 cut(s) 276
AspS9I GGNCC 1 cut(s) 390
AsuC2I CCSGG 3 cut(s) 274, 388, 412
AsuHPI GGTGA 4 cut(s) 142, 280, 647, 1096
AvaII GGWCC 1 cut(s) 390
BanI GGYRCC 2 cut(s) 276, 621
BanII GRGCYC 2 cut(s) 480, 1101
BbrPI CACGTG 1 cut(s) 1150
Bbv12I GWGCWC 2 cut(s) 255, 480
BbvI GCAGC 3 cut(s) 17, 481, 812
BccI CCATC 2 cut(s) 289, 989
BciT130I CCWGG 3 cut(s) 140, 425, 1080
BcnI CCSGG 3 cut(s) 274, 388, 412
BcoDI GTCTC 1 cut(s) 477
BcuI ACTAGT 1 cut(s) 887
BfaI CTAG 5 cut(s) 185, 209, 764, 888, 902
BfmI CTRYAG 1 cut(s) 416
BfrI CTTAAG 1 cut(s) 1066
BfuAI ACCTGC 1 cut(s) 708
BglI GCCNNNNNGGC 1 cut(s) 497
BglII AGATCT 2 cut(s) 673, 1127
BisI GCNGC 6 cut(s) 6, 226, 492, 495, 498, 801
BlpI GCTNAGC 1 cut(s) 1061
BlsI GCNGC 6 cut(s) 7, 227, 493, 496, 499, 802
BmcAI AGTACT 1 cut(s) 398
Bme1390I CCNGG 6 cut(s) 140, 274, 388, 412, 425, 1080
Bme18I GGWCC 1 cut(s) 390
BmeRI GACNNNNNGTC 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 390
BmiI GGNNCC 3 cut(s) 278, 409, 623
BmrFI CCNGG 6 cut(s) 140, 274, 388, 412, 425, 1080
BmsI GCATC 4 cut(s) 384, 754, 761, 789
BplI GAGNNNNNCTC 2 cut(s) 1085, 1117
Bpu1102I GCTNAGC 1 cut(s) 1061
BpuEI CTTGAG 2 cut(s) 647, 770
BpuMI CCSGG 3 cut(s) 274, 388, 412
Bsa29I ATCGAT 2 cut(s) 378, 783
BsaAI YACGTR 1 cut(s) 1150
BsaJI CCNNGG 5 cut(s) 314, 507, 625, 922, 1079
BsaWI WCCGGW 1 cut(s) 404
Bsc4I CCNNNNNNNGG 2 cut(s) 411, 487
Bse1I ACTGG 1 cut(s) 1043
BseAI TCCGGA 1 cut(s) 404
BseBI CCWGG 3 cut(s) 140, 425, 1080
BseCI ATCGAT 2 cut(s) 378, 783
BseDI CCNNGG 5 cut(s) 314, 507, 625, 922, 1079
BseGI GGATG 1 cut(s) 776
BseLI CCNNNNNNNGG 2 cut(s) 411, 487
BseMII CTCAG 2 cut(s) 129, 1052
BseNI ACTGG 1 cut(s) 1043
BseX3I CGGCCG 1 cut(s) 489
BseXI GCAGC 3 cut(s) 17, 481, 812
Bsh1236I CGCG 1 cut(s) 294
Bsh1285I CGRYCG 1 cut(s) 492
BshFI GGCC 5 cut(s) 71, 428, 491, 506, 512
BshNI GGYRCC 2 cut(s) 276, 621
BshVI ATCGAT 2 cut(s) 378, 783
BsiEI CGRYCG 1 cut(s) 492
BsiHKAI GWGCWC 2 cut(s) 255, 480
BsiSI CCGG 4 cut(s) 274, 388, 405, 411
BslFI GGGAC 1 cut(s) 904
BslI CCNNNNNNNGG 2 cut(s) 411, 487
BsmAI GTCTC 1 cut(s) 477
BsmFI GGGAC 1 cut(s) 904
BsnI GGCC 5 cut(s) 71, 428, 491, 506, 512
Bsp1286I GDGCHC 3 cut(s) 255, 480, 1101
Bsp13I TCCGGA 1 cut(s) 404
Bsp143I GATC 9 cut(s) 298, 318, 379, 673, 688, 705, 729, 1127, 1181
Bsp1720I GCTNAGC 1 cut(s) 1061
Bsp19I CCATGG 1 cut(s) 922
BspANI GGCC 5 cut(s) 71, 428, 491, 506, 512
BspCNI CTCAG 2 cut(s) 128, 1053
BspDI ATCGAT 2 cut(s) 378, 783
BspEI TCCGGA 1 cut(s) 404
BspFNI CGCG 1 cut(s) 294
BspLI GGNNCC 3 cut(s) 278, 409, 623
BspMI ACCTGC 1 cut(s) 708
BspPI GGATC 2 cut(s) 326, 696
BspQI GCTCTTC 2 cut(s) 43, 53
BspT107I GGYRCC 2 cut(s) 276, 621
BspTI CTTAAG 1 cut(s) 1066
BsrBI CCGCTC 1 cut(s) 246
BsrI ACTGG 1 cut(s) 1043
BssECI CCNNGG 5 cut(s) 314, 507, 625, 922, 1079
BssMI GATC 9 cut(s) 298, 318, 379, 673, 688, 705, 729, 1127, 1181
BssT1I CCWWGG 1 cut(s) 922
Bst2UI CCWGG 3 cut(s) 140, 425, 1080
Bst6I CTCTTC 2 cut(s) 43, 53
BstAFI CTTAAG 1 cut(s) 1066
BstBAI YACGTR 1 cut(s) 1150
BstC8I GCNNGC 3 cut(s) 355, 657, 1026
BstDEI CTNAG 3 cut(s) 115, 1061, 1218
BstDSI CCRYGG 1 cut(s) 922
BstF5I GGATG 1 cut(s) 776
BstFNI CGCG 1 cut(s) 294
BstKTI GATC 9 cut(s) 301, 321, 382, 676, 691, 708, 732, 1130, 1184
BstMAI GTCTC 1 cut(s) 477
BstMBI GATC 9 cut(s) 298, 318, 379, 673, 688, 705, 729, 1127, 1181
BstMCI CGRYCG 1 cut(s) 492
BstMWI GCNNNNNNNGC 3 cut(s) 497, 503, 832
BstNI CCWGG 3 cut(s) 140, 425, 1080
BstSCI CCNGG 6 cut(s) 138, 272, 386, 410, 423, 1078
BstSFI CTRYAG 1 cut(s) 416
BstUI CGCG 1 cut(s) 294
BstV1I GCAGC 3 cut(s) 17, 481, 812
BstX2I RGATCY 3 cut(s) 673, 688, 1127
BstXI CCANNNNNNTGG 1 cut(s) 520
BstYI RGATCY 3 cut(s) 673, 688, 1127
BstZI CGGCCG 1 cut(s) 489
Bsu15I ATCGAT 2 cut(s) 378, 783
BsuRI GGCC 5 cut(s) 71, 428, 491, 506, 512
BsuTUI ATCGAT 2 cut(s) 378, 783
BtgI CCRYGG 1 cut(s) 922
BtgZI GCGATG 1 cut(s) 322
BtsCI GGATG 1 cut(s) 776
BveI ACCTGC 1 cut(s) 708
Cac8I GCNNGC 3 cut(s) 355, 657, 1026
CaiI CAGNNNCTG 1 cut(s) 424
Cfr13I GGNCC 1 cut(s) 390
ClaI ATCGAT 2 cut(s) 378, 783
CseI GACGC 2 cut(s) 283, 335
Csp6I GTAC 2 cut(s) 277, 397
CviAII CATG 5 cut(s) 55, 562, 812, 923, 1198
CviQI GTAC 2 cut(s) 277, 397
DdeI CTNAG 3 cut(s) 115, 1061, 1218
DpnI GATC 9 cut(s) 300, 320, 381, 675, 690, 707, 731, 1129, 1183
DpnII GATC 9 cut(s) 298, 318, 379, 673, 688, 705, 729, 1127, 1181
DriI GACNNNNNGTC 1 cut(s) 172
EaeI YGGCCR 2 cut(s) 489, 504
EagI CGGCCG 1 cut(s) 489
Eam1104I CTCTTC 2 cut(s) 43, 53
Eam1105I GACNNNNNGTC 1 cut(s) 172
EarI CTCTTC 2 cut(s) 43, 53
Ecl136II GAGCTC 1 cut(s) 478
EclXI CGGCCG 1 cut(s) 489
Eco130I CCWWGG 1 cut(s) 922
Eco24I GRGCYC 2 cut(s) 480, 1101
Eco47I GGWCC 1 cut(s) 390
Eco52I CGGCCG 1 cut(s) 489
Eco53kI GAGCTC 1 cut(s) 478
Eco72I CACGTG 1 cut(s) 1150
EcoICRI GAGCTC 1 cut(s) 478
EcoRII CCWGG 3 cut(s) 138, 423, 1078
EcoT14I CCWWGG 1 cut(s) 922
EcoT38I GRGCYC 2 cut(s) 480, 1101
ErhI CCWWGG 1 cut(s) 922
FaeI CATG 5 cut(s) 58, 565, 815, 926, 1201
FaqI GGGAC 1 cut(s) 904
FatI CATG 5 cut(s) 54, 561, 811, 922, 1197
FauI CCCGC 1 cut(s) 299
Fnu4HI GCNGC 6 cut(s) 6, 226, 492, 495, 498, 801
FokI GGATG 1 cut(s) 783
FriOI GRGCYC 2 cut(s) 480, 1101
Fsp4HI GCNGC 6 cut(s) 6, 226, 492, 495, 498, 801
FspBI CTAG 5 cut(s) 185, 209, 764, 888, 902
GluI GCNGC 6 cut(s) 6, 226, 492, 495, 498, 801
HaeIII GGCC 5 cut(s) 71, 428, 491, 506, 512
HapII CCGG 4 cut(s) 274, 388, 405, 411
HgaI GACGC 2 cut(s) 283, 335
Hin1II CATG 5 cut(s) 58, 565, 815, 926, 1201
HindIII AAGCTT 1 cut(s) 833
HinfI GANTC 3 cut(s) 212, 485, 937
HpaII CCGG 4 cut(s) 274, 388, 405, 411
HphI GGTGA 4 cut(s) 142, 280, 647, 1096
Hpy166II GTNNAC 1 cut(s) 722
Hpy188I TCNGA 5 cut(s) 118, 250, 318, 482, 855
Hpy188III TCNNGA 5 cut(s) 268, 405, 749, 764, 902
Hpy8I GTNNAC 1 cut(s) 722
Hpy99I CGWCG 2 cut(s) 299, 475
HpyAV CCTTC 5 cut(s) 56, 187, 208, 534, 761
HpyCH4IV ACGT 2 cut(s) 1149, 1191
HpyCH4V TGCA 9 cut(s) 192, 357, 438, 546, 800, 819, 979, 1024, 1201
HpyF10VI GCNNNNNNNGC 3 cut(s) 497, 503, 832
HpyF3I CTNAG 3 cut(s) 115, 1061, 1218
HpySE526I ACGT 2 cut(s) 1149, 1191
Hsp92II CATG 5 cut(s) 58, 565, 815, 926, 1201
Kpn2I TCCGGA 1 cut(s) 404
KpnI GGTACC 1 cut(s) 280
Kzo9I GATC 9 cut(s) 298, 318, 379, 673, 688, 705, 729, 1127, 1181
LguI GCTCTTC 2 cut(s) 43, 53
LmnI GCTCC 5 cut(s) 251, 407, 475, 483, 1057
Lsp1109I GCAGC 3 cut(s) 17, 481, 812
LweI GCATC 4 cut(s) 384, 754, 761, 789
MaeI CTAG 5 cut(s) 185, 209, 764, 888, 902
MaeII ACGT 2 cut(s) 1149, 1191
MaeIII GTNAC 5 cut(s) 286, 635, 738, 934, 1084
MalI GATC 9 cut(s) 300, 320, 381, 675, 690, 707, 731, 1129, 1183
MbiI CCGCTC 1 cut(s) 246
MboI GATC 9 cut(s) 298, 318, 379, 673, 688, 705, 729, 1127, 1181
MboII GAAGA 8 cut(s) 30, 33, 70, 94, 121, 607, 668, 724
MfeI CAATTG 2 cut(s) 162, 1029
MflI RGATCY 3 cut(s) 673, 688, 1127
MhlI GDGCHC 3 cut(s) 255, 480, 1101
MluCI AATT 6 cut(s) 162, 433, 602, 645, 989, 1029
MlyI GAGTC 2 cut(s) 479, 931
MmeI TCCRAC 1 cut(s) 387
MroI TCCGGA 1 cut(s) 404
MseI TTAA 3 cut(s) 614, 1052, 1067
MslI CAYNNNNRTG 1 cut(s) 566
MspA1I CMGCKG 1 cut(s) 494
MspCI CTTAAG 1 cut(s) 1066
MspI CCGG 4 cut(s) 274, 388, 405, 411
MspR9I CCNGG 6 cut(s) 140, 274, 388, 412, 425, 1080
MunI CAATTG 2 cut(s) 162, 1029
MvaI CCWGG 3 cut(s) 140, 425, 1080
MvnI CGCG 1 cut(s) 294
MwoI GCNNNNNNNGC 3 cut(s) 497, 503, 832
NciI CCSGG 3 cut(s) 274, 388, 412
NcoI CCATGG 1 cut(s) 922
NdeII GATC 9 cut(s) 298, 318, 379, 673, 688, 705, 729, 1127, 1181
NlaIII CATG 5 cut(s) 58, 565, 815, 926, 1201
NlaIV GGNNCC 3 cut(s) 278, 409, 623
NmeAIII GCCGAG 2 cut(s) 467, 532
NmuCI GTSAC 4 cut(s) 286, 635, 934, 1084
PciSI GCTCTTC 2 cut(s) 43, 53
PfeI GAWTC 1 cut(s) 212
PfoI TCCNGGA 1 cut(s) 138
PkrI GCNGC 6 cut(s) 7, 227, 493, 496, 499, 802
PleI GAGTC 2 cut(s) 479, 931
PmaCI CACGTG 1 cut(s) 1150
PmlI CACGTG 1 cut(s) 1150
PpsI GAGTC 2 cut(s) 479, 931
Ppu21I YACGTR 1 cut(s) 1150
Psp124BI GAGCTC 1 cut(s) 480
Psp6I CCWGG 3 cut(s) 138, 423, 1078
PspCI CACGTG 1 cut(s) 1150
PspGI CCWGG 3 cut(s) 138, 423, 1078
PspN4I GGNNCC 3 cut(s) 278, 409, 623
PspPI GGNCC 1 cut(s) 390
PstNI CAGNNNCTG 1 cut(s) 424
PsuI RGATCY 3 cut(s) 673, 688, 1127
RsaI GTAC 2 cut(s) 278, 398
RsaNI GTAC 2 cut(s) 277, 397
RseI CAYNNNNRTG 1 cut(s) 566
SacI GAGCTC 1 cut(s) 480
SapI GCTCTTC 2 cut(s) 43, 53
SaqAI TTAA 3 cut(s) 614, 1052, 1067
SatI GCNGC 6 cut(s) 6, 226, 492, 495, 498, 801
Sau3AI GATC 9 cut(s) 298, 318, 379, 673, 688, 705, 729, 1127, 1181
Sau96I GGNCC 1 cut(s) 390
ScaI AGTACT 1 cut(s) 398
SchI GAGTC 2 cut(s) 479, 931
ScrFI CCNGG 6 cut(s) 140, 274, 388, 412, 425, 1080
SduI GDGCHC 3 cut(s) 255, 480, 1101
SfaNI GCATC 4 cut(s) 384, 754, 761, 789
SfcI CTRYAG 1 cut(s) 416
SinI GGWCC 1 cut(s) 390
SmiMI CAYNNNNRTG 1 cut(s) 566
SmlI CTYRAG 3 cut(s) 662, 749, 1066
SmoI CTYRAG 3 cut(s) 662, 749, 1066
SpeI ACTAGT 1 cut(s) 887
Sse9I AATT 6 cut(s) 162, 433, 602, 645, 989, 1029
SspMI CTAG 5 cut(s) 185, 209, 764, 888, 902
SstI GAGCTC 1 cut(s) 480
StyD4I CCNGG 6 cut(s) 138, 272, 386, 410, 423, 1078
StyI CCWWGG 1 cut(s) 922
TaiI ACGT 2 cut(s) 1152, 1194
TaqI TCGA 5 cut(s) 297, 378, 728, 783, 1004
TasI AATT 6 cut(s) 162, 433, 602, 645, 989, 1029
TatI WGTACW 1 cut(s) 396
TauI GCSGC 3 cut(s) 228, 494, 500
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 3 cut(s) 614, 1052, 1067
Tru9I TTAA 3 cut(s) 614, 1052, 1067
TseFI GTSAC 4 cut(s) 286, 635, 934, 1084
TseI GCWGC 3 cut(s) 5, 494, 800
Tsp45I GTSAC 4 cut(s) 286, 635, 934, 1084
TspDTI ATGAA 4 cut(s) 71, 121, 135, 614
TspGWI ACGGA 2 cut(s) 488, 572
Vha464I CTTAAG 1 cut(s) 1066
VpaK11BI GGWCC 1 cut(s) 390
XbaI TCTAGA 2 cut(s) 763, 901
XspI CTAG 5 cut(s) 185, 209, 764, 888, 902
ZrmI AGTACT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.