Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001659

Physical Location & Seq

Genomic Coordinates Reverse (-)

57372766 .. 57447224

Gene Structure 74459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0414800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCTGGACCCGACGCAAGCTGTGTGAATGAGATCTGCCAGGGAGATGAAATTGTTTCAAAAGGCGTAAGAAACCTAGCCATCTTCTTTGAGACTCTCGGCGCCTCTTCTCCGGATACAAGGAAACAGTTCAGTTTCAGGGCCCGGGCACCTAGTTCTATAACCAGCAATCGAAAAGGCTGCGGAGGATCTGCTGGTTCAGGCACCTATACCTATACTCCTGTCGACTTCAGGTCCAAGTTCAGGGGACCAGTGGCTGGTGGAGATGCTTCTATGGACAAAGCAGTGCCTTGCAATGAGTGTTCTAAGGAGCACCCCCCTTATTCTTATTGCCCTTACGCACCTTATGGGCCTTGTCGTATTTGTTATAAGGTTCACCACCCTAGTTATTGCCCTTACTTCGACCATATCCCACAGGGTGCAACTTTTGACCATGGCTATGAAATAATTTGCGGATGTGGTAATGAATTTAATGAGGATAAGTGGGTTTGTACCTCTTGTGGTGGGAGCAGAGCAGTGCTTAAGCCCAAGTATTGTTCCATTTGTAATAGCGTGAAACAGCACGGCACATATGAATGCCCGAAGGACAAGGTTCTTGCTGCCAAGTATAAATTGGCCAGAGACCAGAGGCGTTCAGTTGTGCCGAATTTGATTCCCTATGACACTGTTTATATTCCAAAATCATCATCAGGAAAGATCTATGTTCCAACTCCTCCTCCTGGGTGGGTTTGTGGACACATGAAAGAAGGCATGTTTACTGGGTCTACGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003824 GO:0004812 GO:0004818 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006424 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko00970 ko01100 ko01110 ko01120 map00860 map00970 map01100 map01110 map01120

Pfam Domains

Protein Families

GST_C GST_C_3 tRNA-synt_1c tRNA-synt_1c_C

Protein Analysis

257

Amino Acids

28.07

Weight (kDa)

8.75

Isoelectric Point (pI)

37.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26710
fragaria_vesca	FvH4_1g07040 FvH4_3g18420 FvH4_5g29940 FvH4_5g29940 FvH4_6g08750
malus_domestica	MD04G1184100.v1.1 MD12G1197300.v1.1
prunus_persica	Prupe.6G302600_v2.0.a1 Prupe.6G302600_v2.0.a1
pyrus_communis	pycom04g16310
rosa_chinensis	RchiOBHm_Chr1g0323481 RchiOBHm_Chr1g0323531 RchiOBHm_Chr1g0330311 RchiOBHm_Chr1g0330321 RchiOBHm_Chr1g0330421 RchiOBHm_Chr1g0330431 RchiOBHm_Chr3g0459011
rosa_laevigata	RLG00000025126 RLG00000029811 RLG00000030323 RLG00000030332
rosa_multiflora	Rmu_co8493977.1_g000001 Rmu_sc0002634.1_g000044 Rmu_sc0004343.1_g000022 Rmu_sc0007290.1_g000009 Rmu_sc0007290.1_g000010
rosa_roxburghii	Rroxscaffold_4G00319950 Rroxscaffold_4G00319960 Rroxscaffold_6G00420600
rosa_rugosa	Rorug01G0088900 Rorug03G0032500 Rorug05G0414800
rosa_samantha	Rh1AG106700 Rh1AG106800 Rh1CG056600 Rh1CG057900 Rh1CG102700 Rh1CG102800 Rh1DG060600 Rh1DG061700 Rh1DG110600 Rh3BG093600 Rh5DG502200 Rh6BG457000 Rh6BG457100
rosa_wichuraiana	Rw1G008430 Rw1G008550 Rw3G007770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	369
AccB1I	GGYRCC	3 cut(s)	101, 148, 203
AccB7I	CCANNNNNTGG	1 cut(s)	257
AccI	GTMKAC	2 cut(s)	225, 764
AccIII	TCCGGA	1 cut(s)	112
AciI	CCGC	2 cut(s)	183, 453
AclWI	GGATC	1 cut(s)	196
AcoI	YGGCCR	1 cut(s)	615
AcsI	RAATTY	2 cut(s)	467, 646
AcuI	CTGAAG	1 cut(s)	214
AcyI	GRCGYC	1 cut(s)	102
AdeI	CACNNNGTG	1 cut(s)	419
AfaI	GTAC	1 cut(s)	493
AfiI	CCNNNNNNNGG	3 cut(s)	243, 257, 719
AflII	CTTAAG	1 cut(s)	521
AgsI	TTSAA	1 cut(s)	60
AhdI	GACNNNNNGTC	1 cut(s)	232
AjnI	CCWGG	2 cut(s)	39, 718
AluBI	AGCT	1 cut(s)	21
AluI	AGCT	1 cut(s)	21
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	2 cut(s)	86, 615
AlwI	GGATC	1 cut(s)	196
AlwNI	CAGNNNCTG	1 cut(s)	257
Ama87I	CYCGRG	1 cut(s)	144
Aor13HI	TCCGGA	1 cut(s)	112
AoxI	GGCC	3 cut(s)	141, 350, 615
ApaI	GGGCCC	1 cut(s)	145
ApeKI	GCWGC	2 cut(s)	180, 599
ApoI	RAATTY	2 cut(s)	467, 646
Asp700I	GAANNNNTTC	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	104
AspS9I	GGNCC	6 cut(s)	8, 141, 142, 234, 248, 350
AsuC2I	CCSGG	2 cut(s)	145, 146
AsuHPI	GGTGA	1 cut(s)	368
AvaI	CYCGRG	1 cut(s)	144
AvaII	GGWCC	3 cut(s)	8, 234, 248
BaeGI	GKGCMC	2 cut(s)	145, 151
BalI	TGGCCA	1 cut(s)	617
BanI	GGYRCC	3 cut(s)	101, 148, 203
BanII	GRGCYC	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	315
BbvI	GCAGC	2 cut(s)	167, 586
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	1 cut(s)	580
BcgI	CGANNNNNNTGC	2 cut(s)	162, 196
BciT130I	CCWGG	2 cut(s)	41, 720
BciVI	GTATCC	1 cut(s)	109
BcnI	CCSGG	2 cut(s)	145, 146
BcoDI	GTCTC	2 cut(s)	86, 615
BfaI	CTAG	3 cut(s)	77, 153, 384
BfoI	RGCGCY	1 cut(s)	105
BfrI	CTTAAG	1 cut(s)	521
BfuI	GTATCC	1 cut(s)	109
BglII	AGATCT	2 cut(s)	33, 696
BisI	GCNGC	2 cut(s)	181, 600
BlsI	GCNGC	2 cut(s)	182, 601
Bme1390I	CCNGG	4 cut(s)	41, 145, 146, 720
Bme18I	GGWCC	3 cut(s)	8, 234, 248
BmeRI	GACNNNNNGTC	1 cut(s)	232
BmeT110I	CYCGRG	1 cut(s)	144
BmgT120I	GGNCC	6 cut(s)	8, 141, 142, 234, 248, 350
BmiI	GGNNCC	6 cut(s)	10, 103, 143, 150, 205, 249
BmrFI	CCNGG	4 cut(s)	41, 145, 146, 720
BmrI	ACTGGG	1 cut(s)	768
BmsI	GCATC	1 cut(s)	256
BmuI	ACTGGG	1 cut(s)	768
BpuMI	CCSGG	2 cut(s)	145, 146
BsaHI	GRCGYC	1 cut(s)	102
BsaI	GGTCTC	1 cut(s)	615
BsaJI	CCNNGG	4 cut(s)	40, 144, 433, 719
BsaWI	WCCGGW	1 cut(s)	112
BsaXI	ACNNNNNCTCC	4 cut(s)	202, 232, 700, 730
Bsc4I	CCNNNNNNNGG	3 cut(s)	243, 257, 719
Bse1I	ACTGG	2 cut(s)	251, 763
Bse3DI	GCAATG	1 cut(s)	301
BseAI	TCCGGA	1 cut(s)	112
BseBI	CCWGG	2 cut(s)	41, 720
BseDI	CCNNGG	4 cut(s)	40, 144, 433, 719
BseGI	GGATG	1 cut(s)	461
BseLI	CCNNNNNNNGG	3 cut(s)	243, 257, 719
BseMI	GCAATG	1 cut(s)	301
BseNI	ACTGG	2 cut(s)	251, 763
BseRI	GAGGAG	2 cut(s)	702, 705
BseSI	GKGCMC	2 cut(s)	145, 151
BseXI	GCAGC	2 cut(s)	167, 586
BshFI	GGCC	3 cut(s)	143, 352, 617
BshNI	GGYRCC	3 cut(s)	101, 148, 203
BsiHKAI	GWGCWC	1 cut(s)	315
BsiHKCI	CYCGRG	1 cut(s)	144
BsiSI	CCGG	2 cut(s)	113, 145
BslFI	GGGAC	1 cut(s)	261
BslI	CCNNNNNNNGG	3 cut(s)	243, 257, 719
BsmAI	GTCTC	2 cut(s)	86, 615
BsmFI	GGGAC	1 cut(s)	261
BsmI	GAATGC	1 cut(s)	581
BsnI	GGCC	3 cut(s)	143, 352, 617
Bso31I	GGTCTC	1 cut(s)	615
BsoBI	CYCGRG	1 cut(s)	144
Bsp120I	GGGCCC	1 cut(s)	141
Bsp1286I	GDGCHC	3 cut(s)	145, 151, 315
Bsp13I	TCCGGA	1 cut(s)	112
Bsp143I	GATC	3 cut(s)	33, 188, 696
Bsp19I	CCATGG	1 cut(s)	433
BspACI	CCGC	2 cut(s)	183, 453
BspANI	GGCC	3 cut(s)	143, 352, 617
BspEI	TCCGGA	1 cut(s)	112
BspLI	GGNNCC	6 cut(s)	10, 103, 143, 150, 205, 249
BspPI	GGATC	1 cut(s)	196
BspT107I	GGYRCC	3 cut(s)	101, 148, 203
BspTI	CTTAAG	1 cut(s)	521
BspTNI	GGTCTC	1 cut(s)	615
BsrDI	GCAATG	1 cut(s)	301
BsrI	ACTGG	2 cut(s)	251, 763
BssECI	CCNNGG	4 cut(s)	40, 144, 433, 719
BssMI	GATC	3 cut(s)	33, 188, 696
BssNI	GRCGYC	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	433
Bst2UI	CCWGG	2 cut(s)	41, 720
Bst4CI	ACNGT	2 cut(s)	129, 667
Bst6I	CTCTTC	1 cut(s)	112
BstACI	GRCGYC	1 cut(s)	102
BstAFI	CTTAAG	1 cut(s)	521
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	1 cut(s)	306
BstDSI	CCRYGG	1 cut(s)	433
BstF5I	GGATG	1 cut(s)	461
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	3 cut(s)	36, 191, 699
BstMAI	GTCTC	2 cut(s)	86, 615
BstMBI	GATC	3 cut(s)	33, 188, 696
BstNI	CCWGG	2 cut(s)	41, 720
BstNSI	RCATGY	1 cut(s)	754
BstSCI	CCNGG	4 cut(s)	39, 143, 144, 718
BstSLI	GKGCMC	2 cut(s)	145, 151
BstV1I	GCAGC	2 cut(s)	167, 586
BstX2I	RGATCY	3 cut(s)	33, 188, 696
BstYI	RGATCY	3 cut(s)	33, 188, 696
BsuI	GTATCC	1 cut(s)	109
BsuRI	GGCC	3 cut(s)	143, 352, 617
BtgI	CCRYGG	1 cut(s)	433
BtsCI	GGATG	1 cut(s)	461
BtsI	GCAGTG	2 cut(s)	291, 522
BtsIMutI	CAGTG	4 cut(s)	258, 291, 522, 663
Cac8I	GCNNGC	1 cut(s)	19
CaiI	CAGNNNCTG	1 cut(s)	257
CfoI	GCGC	1 cut(s)	104
Cfr13I	GGNCC	6 cut(s)	8, 141, 142, 234, 248, 350
Cfr9I	CCCGGG	1 cut(s)	144
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	492
CviAII	CATG	3 cut(s)	434, 739, 751
CviQI	GTAC	1 cut(s)	492
DdeI	CTNAG	1 cut(s)	306
DinI	GGCGCC	1 cut(s)	103
DpnI	GATC	3 cut(s)	35, 190, 698
DpnII	GATC	3 cut(s)	33, 188, 696
DraIII	CACNNNGTG	1 cut(s)	419
DriI	GACNNNNNGTC	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	615
Eam1104I	CTCTTC	1 cut(s)	112
Eam1105I	GACNNNNNGTC	1 cut(s)	232
EarI	CTCTTC	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	433
Eco24I	GRGCYC	1 cut(s)	145
Eco31I	GGTCTC	1 cut(s)	615
Eco47I	GGWCC	3 cut(s)	8, 234, 248
Eco57I	CTGAAG	1 cut(s)	214
Eco88I	CYCGRG	1 cut(s)	144
EcoO109I	RGGNCCY	1 cut(s)	141
EcoRII	CCWGG	2 cut(s)	39, 718
EcoT14I	CCWWGG	1 cut(s)	433
EcoT38I	GRGCYC	1 cut(s)	145
EgeI	GGCGCC	1 cut(s)	103
EheI	GGCGCC	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	433
FaeI	CATG	3 cut(s)	437, 742, 754
FaqI	GGGAC	1 cut(s)	261
FatI	CATG	3 cut(s)	433, 738, 750
FauNDI	CATATG	1 cut(s)	571
FblI	GTMKAC	2 cut(s)	225, 764
Fnu4HI	GCNGC	2 cut(s)	181, 600
FokI	GGATG	1 cut(s)	468
FriOI	GRGCYC	1 cut(s)	145
Fsp4HI	GCNGC	2 cut(s)	181, 600
FspBI	CTAG	3 cut(s)	77, 153, 384
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	2 cut(s)	181, 600
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	3 cut(s)	143, 352, 617
HapII	CCGG	2 cut(s)	113, 145
HgaI	GACGC	1 cut(s)	23
HhaI	GCGC	1 cut(s)	104
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	3 cut(s)	437, 742, 754
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	2 cut(s)	94, 652
HpaII	CCGG	2 cut(s)	113, 145
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	5 cut(s)	226, 376, 734, 756, 765
Hpy188III	TCNNGA	2 cut(s)	113, 690
Hpy8I	GTNNAC	5 cut(s)	226, 376, 734, 756, 765
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	2 cut(s)	577, 740
HpyCH4III	ACNGT	2 cut(s)	129, 667
HpyCH4V	TGCA	2 cut(s)	294, 422
HpyF3I	CTNAG	1 cut(s)	306
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	3 cut(s)	437, 742, 754
HspAI	GCGC	1 cut(s)	102
KasI	GGCGCC	1 cut(s)	101
Kpn2I	TCCGGA	1 cut(s)	112
Kzo9I	GATC	3 cut(s)	33, 188, 696
LmnI	GCTCC	2 cut(s)	310, 507
Lsp1109I	GCAGC	2 cut(s)	167, 586
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	3 cut(s)	77, 153, 384
MalI	GATC	3 cut(s)	35, 190, 698
MboI	GATC	3 cut(s)	33, 188, 696
MboII	GAAGA	2 cut(s)	76, 99
MflI	RGATCY	3 cut(s)	33, 188, 696
MhlI	GDGCHC	3 cut(s)	145, 151, 315
MlsI	TGGCCA	1 cut(s)	617
MluCI	AATT	5 cut(s)	51, 447, 467, 611, 646
MluNI	TGGCCA	1 cut(s)	617
Mly113I	GGCGCC	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	1 cut(s)	731
MnlI	CCTC	7 cut(s)	115, 179, 469, 505, 621, 723, 726
Mox20I	TGGCCA	1 cut(s)	617
MroI	TCCGGA	1 cut(s)	112
MroXI	GAANNNNTTC	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	617
MseI	TTAA	2 cut(s)	471, 522
MslI	CAYNNNNRTG	2 cut(s)	438, 574
Msp20I	TGGCCA	1 cut(s)	617
MspCI	CTTAAG	1 cut(s)	521
MspI	CCGG	2 cut(s)	113, 145
MspR9I	CCNGG	4 cut(s)	41, 145, 146, 720
Mva1269I	GAATGC	1 cut(s)	581
MvaI	CCWGG	2 cut(s)	41, 720
NarI	GGCGCC	1 cut(s)	102
NciI	CCSGG	2 cut(s)	145, 146
NcoI	CCATGG	1 cut(s)	433
NdeI	CATATG	1 cut(s)	571
NdeII	GATC	3 cut(s)	33, 188, 696
NlaIII	CATG	3 cut(s)	437, 742, 754
NlaIV	GGNNCC	6 cut(s)	10, 103, 143, 150, 205, 249
NmeAIII	GCCGAG	1 cut(s)	78
NspI	RCATGY	1 cut(s)	754
PctI	GAATGC	1 cut(s)	581
PdmI	GAANNNNTTC	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	652
PflMI	CCANNNNNTGG	1 cut(s)	257
PkrI	GCNGC	2 cut(s)	182, 601
PleI	GAGTC	1 cut(s)	88
PluTI	GGCGCC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	88
PsiI	TTATAA	1 cut(s)	369
Psp6I	CCWGG	2 cut(s)	39, 718
PspGI	CCWGG	2 cut(s)	39, 718
PspN4I	GGNNCC	6 cut(s)	10, 103, 143, 150, 205, 249
PspOMI	GGGCCC	1 cut(s)	141
PspPI	GGNCC	6 cut(s)	8, 141, 142, 234, 248, 350
PstNI	CAGNNNCTG	1 cut(s)	257
PsuI	RGATCY	3 cut(s)	33, 188, 696
RsaI	GTAC	1 cut(s)	493
RsaNI	GTAC	1 cut(s)	492
RseI	CAYNNNNRTG	2 cut(s)	438, 574
SalI	GTCGAC	1 cut(s)	224
SaqAI	TTAA	2 cut(s)	471, 522
SatI	GCNGC	2 cut(s)	181, 600
Sau3AI	GATC	3 cut(s)	33, 188, 696
Sau96I	GGNCC	6 cut(s)	8, 141, 142, 234, 248, 350
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	4 cut(s)	41, 145, 146, 720
SduI	GDGCHC	3 cut(s)	145, 151, 315
SfaNI	GCATC	1 cut(s)	256
SfoI	GGCGCC	1 cut(s)	103
SinI	GGWCC	3 cut(s)	8, 234, 248
SmaI	CCCGGG	1 cut(s)	146
SmiMI	CAYNNNNRTG	2 cut(s)	438, 574
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
SrfI	GCCCGGGC	1 cut(s)	146
Sse9I	AATT	5 cut(s)	51, 447, 467, 611, 646
SsiI	CCGC	2 cut(s)	183, 453
SspDI	GGCGCC	1 cut(s)	101
SspMI	CTAG	3 cut(s)	77, 153, 384
StyD4I	CCNGG	4 cut(s)	39, 143, 144, 718
StyI	CCWWGG	1 cut(s)	433
TaaI	ACNGT	2 cut(s)	129, 667
TaqI	TCGA	3 cut(s)	172, 225, 402
TasI	AATT	5 cut(s)	51, 447, 467, 611, 646
TfiI	GAWTC	1 cut(s)	652
Tru1I	TTAA	2 cut(s)	471, 522
Tru9I	TTAA	2 cut(s)	471, 522
TscAI	CASTG	4 cut(s)	258, 291, 522, 670
TseI	GCWGC	2 cut(s)	180, 599
TspDTI	ATGAA	5 cut(s)	63, 456, 480, 588, 755
TspMI	CCCGGG	1 cut(s)	144
TspRI	CASTG	4 cut(s)	258, 291, 522, 670
Van91I	CCANNNNNTGG	1 cut(s)	257
Vha464I	CTTAAG	1 cut(s)	521
VpaK11BI	GGWCC	3 cut(s)	8, 234, 248
XapI	RAATTY	2 cut(s)	467, 646
XceI	RCATGY	1 cut(s)	754
XcmI	CCANNNNNNNNNTGG	1 cut(s)	610
XmaI	CCCGGG	1 cut(s)	144
XmiI	GTMKAC	2 cut(s)	225, 764
XmnI	GAANNNNTTC	1 cut(s)	128
XspI	CTAG	3 cut(s)	77, 153, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.