Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001659

Physical Location & Seq

Genomic Coordinates Reverse (-)

2584538 .. 2588588

Gene Structure 4051 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0032500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2568 bp

ATGGCTCCTTCACAGTCAGCAAGTGTAGCAAAGAAGACGAAGTCTAAGGAAAAGCGATTGAAGACTAAGAAGACAAAGTCTTTGAAAGCGTCAACATCAACAACATTTTCTGAAGGATCTCATTCGAAGAAGTCTAAGACAAAAGCAGTTGAATCAACTGGGGGTCTTAAGCTGCTGAAGCGTAATGCAGTGACTATGTCACGCATTTCAAGTCGTAAGACTCGTAGACAGAAGAAGATGGTGCTTTTTAATCGAAAAGGCACTCCATGTGGGAAGGTGGCTAAGGAATTGCAGTCCTACATAGGTGTATTGGCACGAAGGAAGGTACCAATCATAAGACCAAATTGGAAAGAGGCAACGACTGAAGAGAAAGGCAAAATTTGGTCACGTGTTCAGATTCCGTTTACGCTTGGTCCTGAAAACAAGAAAATGGTTATGAAATCTGCTTGCACAAAGTGGAGGGAATTCAAATCTCGATTGACTTCAAACTATGTTATCCCCTATTTGGATGACCCTGAAGCGTTGAAGTATCCTCCAGATGATTACCCTTTCATAAATGCAGATCATTGGACTGAATTTGTCAAATCGCGGACAACACCCTCATTCTTGGAAAAGCGTAAAGCACAACAAGAAAGGCGCAAACAGAATAAATATCCTCATAGACTGTCCCGCAAGGGTTATGCAGGGTTGGAGGAAGAGTTGGCTAATGAAATCGATGATGAAGAAATTGATAGGGCCACACTCTGGATCAAAGGGCGGCAGTCCAAGAATGGCAATTTCAAGGATGAAGAGACAAAAAAAACTGCTGAAAAAATAGCTGCCTTGAAGAAAAGGGTTGCTACTGGAGAACTATCCATCGAGGGAAGTGATGATATCTTGACATTGGCGTTGGGGACTCCTGAGCACGGAGGAAGAGTGCGTGGAGTTGGAGGTCAAATGAATCCCTCTACTTACTTCAATCTACCTAAACGCAGAAAGCAGAGCTTAGAAGCAACAGTTAGAGTTAGTGTGCAGAAAATATTGTTAGAGGAGAAAGAGAAGACAGTAGAGGACGCAAGGGAGAAGATAATTGAGGAAGCAAAGGAAAAGATTGTTGCAGAGGAACGAGCATTTTGGGCGGCTAAGTTTGCAGAACTTGAAGCAAAGATAAATGCAACTCAAGATGGAAATTGTGCTACTCCTCAGACACATGTTTCTGGTCAAGGAAGTTGTTCACGCACAGCTGAACAAATTGCTCAAGAACAAGCAAAAGCTAGATTGGAAGAAGAAGAAGACGTTAACCGTGTGGATGGAAAAGCAATTCGGGGAGCTTTTGATGTGATTGAAAAAAGGGCCCTACAACGGAAAAAGAAGGGTACAAAGGTGGTGAAGGGAGTTCCTTTGGAAGTAGCACCATGCTCCAAGGTACGTAGTGAGTTGACAAACATAGTTGAGAATGTAGATGTCGACTGTGCATTGGCTAAGGATGTGAAAGAGACTAGGGAAGAAAATGCTGTACCAAATGATATTAAGGAGCCGCATGATGAGGAGGAGGAACAATACGTAGATTTGACATTGGTTGACCCCCCCAAAAAGTCACCAGGAGATGAGCTTGGTTGCAAGTTGGCAGTAGGTTATGTTGAAAATATTGTTGCTTATGCCACTGTAATGGAGTGCGATGATCCCTCCCAAACAATTCATGGTGCTCCACTAGGGGATGGTAATAAGCGTGTTTCCATCTATACCGCGCTTGATGAGAAAGCAAAGAAAGTTGTCATGGCTAATGCTGAAAAGAAGAGGAAAAAGAAAGTCGACATAGATGAACAAGACTCAGAGGTTCAATTTAGCTTGGCAGCAATGGCACCTACATTACCAGAATCATTGAAGATGCTATGTATGTGGGGTGAGTCTGCATTTAGAGATGGGCATACCATCAACTTCATCATGGAACCTGAAGTATTTGGATATTCTCGAAAGACTTTTATTTTGGGATCAGATGTTAGGCGACTTGCAAGCATGAGAGAAGTCTCTGGAAATTGCATTGCTGTGTACCAGAGGTACCTATATGAGCAGTTGACTGCTTATAAAATGGTGGACATGGTTGCATTTGTTGACCTTTCACGAATTGGTGGAAAAGGAAGTGGGAATGGAACTGTGAGGGCCCAACACATCAGAGATAGGCTTCTAACTGCCAAACCAGGCCAAATGTTCATGTTGCCATATAACTCGGGTGATCATTGGATGTTGACAATTGCTGATCCTGACCGAGTTATGTTGCCTCCTTTTGTTTCCCTTAAGTCTTCATTTTTCTTGTTCTGGTGTAGTGCATTTGGTATGTTTAATGCTGAAAGGAAGAAGAAGGGCCGGAGTTCAGTCATTTGGAAAAATTTGGCGGGCATTCCTCCTCAACCGAGCAACAAGGAGTGCGGGTACTTTGTGATGCGATACATGCGGGATATCATTGAGGATAAAGACTTGTCGTTGTTTGCTACCAAGTGGGAGGGGAGAGGCAGCAGCCAATATACCCAAGAAGATATTGATCAATTGCGAAATGAGTGGGCGAAGTTTGTAGTGAAGACGTATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003824 GO:0004812 GO:0004818 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006424 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko00970 ko01100 ko01110 ko01120 map00860 map00970 map01100 map01110 map01120

Pfam Domains

Protein Families

GST_C GST_C_3 tRNA-synt_1c tRNA-synt_1c_C

Protein Analysis

855

Amino Acids

96.6

Weight (kDa)

9.38

Isoelectric Point (pI)

45.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transposase_24	PF03004	186 - 313	7.4e-13	Plant transposase (Ptta/En/Spm family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26710
fragaria_vesca	FvH4_1g07040 FvH4_3g18420 FvH4_5g29940 FvH4_5g29940 FvH4_6g08750
malus_domestica	MD04G1184100.v1.1 MD12G1197300.v1.1
prunus_persica	Prupe.6G302600_v2.0.a1 Prupe.6G302600_v2.0.a1
pyrus_communis	pycom04g16310
rosa_chinensis	RchiOBHm_Chr1g0323481 RchiOBHm_Chr1g0323531 RchiOBHm_Chr1g0330311 RchiOBHm_Chr1g0330321 RchiOBHm_Chr1g0330421 RchiOBHm_Chr1g0330431 RchiOBHm_Chr3g0459011
rosa_laevigata	RLG00000025126 RLG00000029811 RLG00000030323 RLG00000030332
rosa_multiflora	Rmu_co8493977.1_g000001 Rmu_sc0002634.1_g000044 Rmu_sc0004343.1_g000022 Rmu_sc0007290.1_g000009 Rmu_sc0007290.1_g000010
rosa_roxburghii	Rroxscaffold_4G00319950 Rroxscaffold_4G00319960 Rroxscaffold_6G00420600
rosa_rugosa	Rorug01G0088900 Rorug03G0032500 Rorug05G0414800
rosa_samantha	Rh1AG106700 Rh1AG106800 Rh1CG056600 Rh1CG057900 Rh1CG102700 Rh1CG102800 Rh1DG060600 Rh1DG061700 Rh1DG110600 Rh3BG093600 Rh5DG502200 Rh6BG457000 Rh6BG457100
rosa_wichuraiana	Rw1G008430 Rw1G008550 Rw3G007770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2064
Acc65I	GGTACC	2 cut(s)	325, 2037
AccB1I	GGYRCC	3 cut(s)	325, 1840, 2037
AccB7I	CCANNNNNTGG	1 cut(s)	744
AccI	GTMKAC	3 cut(s)	226, 1446, 1791
AccII	CGCG	2 cut(s)	589, 1727
AciI	CCGC	9 cut(s)	589, 670, 757, 1118, 1517, 1725, 2372, 2406, 2431
AclWI	GGATC	5 cut(s)	124, 755, 1655, 1978, 2231
AcsI	RAATTY	4 cut(s)	378, 464, 575, 2365
AcuI	CTGAAG	5 cut(s)	132, 197, 384, 537, 1953
AcvI	CACGTG	1 cut(s)	389
AdeI	CACNNNGTG	1 cut(s)	456
AfaI	GTAC	7 cut(s)	327, 1357, 1407, 1497, 2030, 2039, 2411
AfiI	CCNNNNNNNGG	4 cut(s)	505, 744, 905, 1341
AflII	CTTAAG	2 cut(s)	167, 2273
AflIII	ACRYGT	2 cut(s)	388, 1189
AjnI	CCWGG	2 cut(s)	1579, 2176
AluBI	AGCT	8 cut(s)	172, 818, 984, 1223, 1253, 1310, 1591, 1827
AluI	AGCT	8 cut(s)	172, 818, 984, 1223, 1253, 1310, 1591, 1827
Alw21I	GWGCWC	2 cut(s)	906, 1687
Alw26I	GTCTC	3 cut(s)	785, 1469, 2011
AlwI	GGATC	5 cut(s)	124, 755, 1655, 1978, 2231
Ama87I	CYCGRG	1 cut(s)	2206
AoxI	GGCC	5 cut(s)	735, 1332, 2139, 2179, 2341
ApaI	GGGCCC	2 cut(s)	1336, 2143
ApeKI	GCWGC	5 cut(s)	172, 818, 1832, 2490, 2493
ApoI	RAATTY	4 cut(s)	378, 464, 575, 2365
ArsI	GACNNNNNNTTYG	4 cut(s)	64, 96, 1948, 1980
Asp700I	GAANNNNTTC	1 cut(s)	1210
Asp718I	GGTACC	2 cut(s)	325, 2037
AspLEI	GCGC	2 cut(s)	639, 1729
AspS9I	GGNCC	7 cut(s)	413, 735, 1332, 1333, 2139, 2140, 2341
AsuHPI	GGTGA	4 cut(s)	1378, 1569, 1895, 2222
AsuII	TTCGAA	1 cut(s)	125
AvaI	CYCGRG	1 cut(s)	2206
AvaII	GGWCC	1 cut(s)	413
BaeGI	GKGCMC	2 cut(s)	1336, 2143
BaeI	ACNNNNGTAYC	2 cut(s)	1347, 1380
BanI	GGYRCC	3 cut(s)	325, 1840, 2037
BanII	GRGCYC	2 cut(s)	1336, 2143
BbrPI	CACGTG	1 cut(s)	389
BbsI	GAAGAC	7 cut(s)	41, 68, 77, 1046, 1278, 2271, 2561
Bbv12I	GWGCWC	2 cut(s)	906, 1687
BbvI	GCAGC	5 cut(s)	159, 805, 1844, 2502, 2505
BccI	CCATC	8 cut(s)	232, 863, 1157, 1283, 1691, 1724, 1895, 1919
BciT130I	CCWGG	2 cut(s)	1581, 2178
BciVI	GTATCC	1 cut(s)	540
BclI	TGATCA	2 cut(s)	2212, 2518
BcoDI	GTCTC	3 cut(s)	785, 1469, 2011
BfaI	CTAG	3 cut(s)	1254, 1479, 1691
BfrI	CTTAAG	2 cut(s)	167, 2273
BfuI	GTATCC	1 cut(s)	540
BisI	GCNGC	8 cut(s)	173, 758, 819, 1119, 1517, 1833, 2491, 2494
BlsI	GCNGC	8 cut(s)	174, 759, 820, 1120, 1518, 1834, 2492, 2495
Bme1390I	CCNGG	2 cut(s)	1581, 2178
Bme18I	GGWCC	1 cut(s)	413
BmeT110I	CYCGRG	1 cut(s)	2206
BmgT120I	GGNCC	7 cut(s)	413, 735, 1332, 1333, 2139, 2140, 2341
BmiI	GGNNCC	8 cut(s)	6, 327, 1334, 1515, 1842, 1929, 2039, 2141
BmrFI	CCNGG	2 cut(s)	1581, 2178
BmrI	ACTGGG	1 cut(s)	168
BmsI	GCATC	2 cut(s)	1857, 2409
BmuI	ACTGGG	1 cut(s)	168
BpiI	GAAGAC	7 cut(s)	41, 68, 77, 1046, 1278, 2271, 2561
BpmI	CTGGAG	2 cut(s)	519, 864
Bpu10I	CCTNAGC	3 cut(s)	282, 900, 1461
Bpu14I	TTCGAA	1 cut(s)	125
BpuEI	CTTGAG	2 cut(s)	1143, 1221
Bsa29I	ATCGAT	1 cut(s)	714
BsaAI	YACGTR	3 cut(s)	389, 1409, 1543
BsaBI	GATNNNNATC	1 cut(s)	2517
BsaJI	CCNNGG	1 cut(s)	1401
BsaXI	ACNNNNNCTCC	6 cut(s)	683, 713, 900, 930, 2393, 2423
Bsc4I	CCNNNNNNNGG	4 cut(s)	505, 744, 905, 1341
Bse1I	ACTGG	2 cut(s)	163, 847
Bse3DI	GCAATG	2 cut(s)	1842, 2019
Bse8I	GATNNNNATC	1 cut(s)	2517
BseBI	CCWGG	2 cut(s)	1581, 2178
BseCI	ATCGAT	1 cut(s)	714
BseDI	CCNNGG	1 cut(s)	1401
BseGI	GGATG	6 cut(s)	514, 790, 1294, 1471, 1702, 2226
BseJI	GATNNNNATC	1 cut(s)	2517
BseLI	CCNNNNNNNGG	4 cut(s)	505, 744, 905, 1341
BseMI	GCAATG	2 cut(s)	1842, 2019
BseMII	CTCAG	3 cut(s)	891, 1196, 1824
BseNI	ACTGG	2 cut(s)	163, 847
BseRI	GAGGAG	5 cut(s)	1043, 1170, 1541, 1544, 2373
BseSI	GKGCMC	2 cut(s)	1336, 2143
BseXI	GCAGC	5 cut(s)	159, 805, 1844, 2502, 2505
BsgI	GTGCAG	1 cut(s)	1031
Bsh1236I	CGCG	2 cut(s)	589, 1727
BshFI	GGCC	5 cut(s)	737, 1334, 2141, 2181, 2343
BshNI	GGYRCC	3 cut(s)	325, 1840, 2037
BshVI	ATCGAT	1 cut(s)	714
BsiHKAI	GWGCWC	2 cut(s)	906, 1687
BsiHKCI	CYCGRG	1 cut(s)	2206
BsiSI	CCGG	1 cut(s)	2344
BslFI	GGGAC	2 cut(s)	652, 907
BslI	CCNNNNNNNGG	4 cut(s)	505, 744, 905, 1341
BsmAI	GTCTC	3 cut(s)	785, 1469, 2011
BsmFI	GGGAC	2 cut(s)	652, 907
BsmI	GAATGC	1 cut(s)	2376
BsnI	GGCC	5 cut(s)	737, 1334, 2141, 2181, 2343
BsoBI	CYCGRG	1 cut(s)	2206
Bsp119I	TTCGAA	1 cut(s)	125
Bsp120I	GGGCCC	2 cut(s)	1332, 2139
Bsp1286I	GDGCHC	4 cut(s)	906, 1336, 1687, 2143
Bsp143I	GATC	8 cut(s)	116, 562, 747, 1660, 1970, 2212, 2236, 2518
BspACI	CCGC	9 cut(s)	589, 670, 757, 1118, 1517, 1725, 2372, 2406, 2431
BspANI	GGCC	5 cut(s)	737, 1334, 2141, 2181, 2343
BspCNI	CTCAG	3 cut(s)	892, 1195, 1823
BspDI	ATCGAT	1 cut(s)	714
BspFNI	CGCG	2 cut(s)	589, 1727
BspLI	GGNNCC	8 cut(s)	6, 327, 1334, 1515, 1842, 1929, 2039, 2141
BspPI	GGATC	5 cut(s)	124, 755, 1655, 1978, 2231
BspT104I	TTCGAA	1 cut(s)	125
BspT107I	GGYRCC	3 cut(s)	325, 1840, 2037
BspTI	CTTAAG	2 cut(s)	167, 2273
BsrDI	GCAATG	2 cut(s)	1842, 2019
BsrI	ACTGG	2 cut(s)	163, 847
BssECI	CCNNGG	1 cut(s)	1401
BssMI	GATC	8 cut(s)	116, 562, 747, 1660, 1970, 2212, 2236, 2518
BssT1I	CCWWGG	1 cut(s)	1401
Bst2UI	CCWGG	2 cut(s)	1581, 2178
Bst4CI	ACNGT	8 cut(s)	15, 666, 997, 1045, 1283, 1451, 1645, 2134
Bst6I	CTCTTC	5 cut(s)	360, 690, 783, 907, 1769
BstAFI	CTTAAG	2 cut(s)	167, 2273
BstBAI	YACGTR	3 cut(s)	389, 1409, 1543
BstBI	TTCGAA	1 cut(s)	125
BstC8I	GCNNGC	3 cut(s)	448, 1993, 2374
BstF5I	GGATG	6 cut(s)	514, 790, 1294, 1471, 1702, 2226
BstFNI	CGCG	2 cut(s)	589, 1727
BstHHI	GCGC	2 cut(s)	639, 1729
BstKTI	GATC	8 cut(s)	119, 565, 750, 1663, 1973, 2215, 2239, 2521
BstMAI	GTCTC	3 cut(s)	785, 1469, 2011
BstMBI	GATC	8 cut(s)	116, 562, 747, 1660, 1970, 2212, 2236, 2518
BstMWI	GCNNNNNNNGC	6 cut(s)	26, 178, 1115, 1127, 1838, 2428
BstNI	CCWGG	2 cut(s)	1581, 2178
BstNSI	RCATGY	2 cut(s)	1193, 2431
BstSCI	CCNGG	2 cut(s)	1579, 2176
BstSLI	GKGCMC	2 cut(s)	1336, 2143
BstSNI	TACGTA	2 cut(s)	1409, 1543
BstUI	CGCG	2 cut(s)	589, 1727
BstV1I	GCAGC	5 cut(s)	159, 805, 1844, 2502, 2505
BstV2I	GAAGAC	7 cut(s)	41, 68, 77, 1046, 1278, 2271, 2561
BstX2I	RGATCY	1 cut(s)	116
BstXI	CCANNNNNNTGG	1 cut(s)	1648
BstYI	RGATCY	1 cut(s)	116
Bsu15I	ATCGAT	1 cut(s)	714
BsuI	GTATCC	1 cut(s)	540
BsuRI	GGCC	5 cut(s)	737, 1334, 2141, 2181, 2343
BsuTUI	ATCGAT	1 cut(s)	714
BtgZI	GCGATG	1 cut(s)	1671
BtsCI	GGATG	6 cut(s)	514, 790, 1294, 1471, 1702, 2226
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	2 cut(s)	195, 1641
Cac8I	GCNNGC	3 cut(s)	448, 1993, 2374
CfoI	GCGC	2 cut(s)	639, 1729
Cfr13I	GGNCC	7 cut(s)	413, 735, 1332, 1333, 2139, 2140, 2341
ClaI	ATCGAT	1 cut(s)	714
CseI	GACGC	2 cut(s)	78, 1061
Csp6I	GTAC	7 cut(s)	326, 1356, 1406, 1496, 2029, 2038, 2410
CviQI	GTAC	7 cut(s)	326, 1356, 1406, 1496, 2029, 2038, 2410
DpnI	GATC	8 cut(s)	118, 564, 749, 1662, 1972, 2214, 2238, 2520
DpnII	GATC	8 cut(s)	116, 562, 747, 1660, 1970, 2212, 2236, 2518
DraIII	CACNNNGTG	1 cut(s)	456
Eam1104I	CTCTTC	5 cut(s)	360, 690, 783, 907, 1769
EarI	CTCTTC	5 cut(s)	360, 690, 783, 907, 1769
Eco105I	TACGTA	2 cut(s)	1409, 1543
Eco130I	CCWWGG	1 cut(s)	1401
Eco24I	GRGCYC	2 cut(s)	1336, 2143
Eco32I	GATATC	2 cut(s)	874, 2437
Eco47I	GGWCC	1 cut(s)	413
Eco57I	CTGAAG	5 cut(s)	132, 197, 384, 537, 1953
Eco72I	CACGTG	1 cut(s)	389
Eco88I	CYCGRG	1 cut(s)	2206
EcoO109I	RGGNCCY	3 cut(s)	1332, 1333, 2139
EcoRI	GAATTC	1 cut(s)	464
EcoRII	CCWGG	2 cut(s)	1579, 2176
EcoRV	GATATC	2 cut(s)	874, 2437
EcoT14I	CCWWGG	1 cut(s)	1401
EcoT38I	GRGCYC	2 cut(s)	1336, 2143
ErhI	CCWWGG	1 cut(s)	1401
FalI	AAGNNNNNCTT	2 cut(s)	968, 1000
FaqI	GGGAC	2 cut(s)	652, 907
FauI	CCCGC	4 cut(s)	677, 2365, 2399, 2424
FbaI	TGATCA	2 cut(s)	2212, 2518
FblI	GTMKAC	3 cut(s)	226, 1446, 1791
Fnu4HI	GCNGC	8 cut(s)	173, 758, 819, 1119, 1517, 1833, 2491, 2494
FokI	GGATG	6 cut(s)	521, 797, 1301, 1478, 1709, 2233
FriOI	GRGCYC	2 cut(s)	1336, 2143
Fsp4HI	GCNGC	8 cut(s)	173, 758, 819, 1119, 1517, 1833, 2491, 2494
FspBI	CTAG	3 cut(s)	1254, 1479, 1691
GlaI	GCGC	2 cut(s)	638, 1728
GluI	GCNGC	8 cut(s)	173, 758, 819, 1119, 1517, 1833, 2491, 2494
GsuI	CTGGAG	2 cut(s)	519, 864
HaeIII	GGCC	5 cut(s)	737, 1334, 2141, 2181, 2343
HapII	CCGG	1 cut(s)	2344
HgaI	GACGC	2 cut(s)	78, 1061
HhaI	GCGC	2 cut(s)	639, 1729
Hin6I	GCGC	2 cut(s)	637, 1727
HinP1I	GCGC	2 cut(s)	637, 1727
HincII	GTYRAC	9 cut(s)	93, 1279, 1419, 1447, 1561, 1792, 2055, 2092, 2226
HindII	GTYRAC	9 cut(s)	93, 1279, 1419, 1447, 1561, 1792, 2055, 2092, 2226
HinfI	GANTC	8 cut(s)	152, 220, 397, 895, 940, 1808, 1856, 1886
HpaI	GTTAAC	1 cut(s)	1279
HpaII	CCGG	1 cut(s)	2344
HphI	GGTGA	4 cut(s)	1378, 1569, 1895, 2222
Hpy188I	TCNGA	6 cut(s)	112, 396, 1185, 1813, 1975, 2153
HpyAV	CCTTC	8 cut(s)	18, 107, 268, 312, 316, 1345, 1363, 2332
HpyCH4III	ACNGT	8 cut(s)	15, 666, 997, 1045, 1283, 1451, 1645, 2134
HpyCH4IV	ACGT	5 cut(s)	388, 1275, 1408, 1542, 2558
HpyF10VI	GCNNNNNNNGC	6 cut(s)	26, 178, 1115, 1127, 1838, 2428
HpySE526I	ACGT	5 cut(s)	388, 1275, 1408, 1542, 2558
HspAI	GCGC	2 cut(s)	637, 1727
KpnI	GGTACC	2 cut(s)	329, 2041
Ksp22I	TGATCA	2 cut(s)	2212, 2518
KspAI	GTTAAC	1 cut(s)	1279
Kzo9I	GATC	8 cut(s)	116, 562, 747, 1660, 1970, 2212, 2236, 2518
LmnI	GCTCC	5 cut(s)	10, 1307, 1403, 1513, 1690
Lsp1109I	GCAGC	5 cut(s)	159, 805, 1844, 2502, 2505
LweI	GCATC	2 cut(s)	1857, 2409
MaeI	CTAG	3 cut(s)	1254, 1479, 1691
MaeII	ACGT	5 cut(s)	388, 1275, 1408, 1542, 2558
MaeIII	GTNAC	4 cut(s)	190, 198, 384, 1575
MalI	GATC	8 cut(s)	118, 564, 749, 1662, 1972, 2214, 2238, 2520
MboI	GATC	8 cut(s)	116, 562, 747, 1660, 1970, 2212, 2236, 2518
MfeI	CAATTG	2 cut(s)	2229, 2522
MflI	RGATCY	1 cut(s)	116
MhlI	GDGCHC	4 cut(s)	906, 1336, 1687, 2143
MlyI	GAGTC	4 cut(s)	214, 889, 1802, 1895
MmeI	TCCRAC	2 cut(s)	669, 907
MroXI	GAANNNNTTC	1 cut(s)	1210
MseI	TTAA	6 cut(s)	168, 249, 1278, 1509, 2274, 2319
MslI	CAYNNNNRTG	2 cut(s)	1646, 2024
MspA1I	CMGCKG	1 cut(s)	1223
MspCI	CTTAAG	2 cut(s)	167, 2273
MspI	CCGG	1 cut(s)	2344
MspR9I	CCNGG	2 cut(s)	1581, 2178
MunI	CAATTG	2 cut(s)	2229, 2522
Mva1269I	GAATGC	1 cut(s)	2376
MvaI	CCWGG	2 cut(s)	1581, 2178
MvnI	CGCG	2 cut(s)	589, 1727
MwoI	GCNNNNNNNGC	6 cut(s)	26, 178, 1115, 1127, 1838, 2428
NdeII	GATC	8 cut(s)	116, 562, 747, 1660, 1970, 2212, 2236, 2518
NlaIV	GGNNCC	8 cut(s)	6, 327, 1334, 1515, 1842, 1929, 2039, 2141
NmuCI	GTSAC	4 cut(s)	190, 198, 384, 1575
NspI	RCATGY	2 cut(s)	1193, 2431
NspV	TTCGAA	1 cut(s)	125
PciI	ACATGT	1 cut(s)	1189
PcsI	WCGNNNNNNNCGW	1 cut(s)	220
PctI	GAATGC	1 cut(s)	2376
PdmI	GAANNNNTTC	1 cut(s)	1210
PfeI	GAWTC	4 cut(s)	152, 397, 940, 1856
PflFI	GACNNNGTC	3 cut(s)	40, 76, 196
PflMI	CCANNNNNTGG	1 cut(s)	744
PkrI	GCNGC	8 cut(s)	174, 759, 820, 1120, 1518, 1834, 2492, 2495
PleI	GAGTC	4 cut(s)	214, 889, 1802, 1894
PmaCI	CACGTG	1 cut(s)	389
PmlI	CACGTG	1 cut(s)	389
PpsI	GAGTC	4 cut(s)	214, 889, 1802, 1894
Ppu21I	YACGTR	3 cut(s)	389, 1409, 1543
PscI	ACATGT	1 cut(s)	1189
PsiI	TTATAA	1 cut(s)	2064
Psp6I	CCWGG	2 cut(s)	1579, 2176
PspCI	CACGTG	1 cut(s)	389
PspGI	CCWGG	2 cut(s)	1579, 2176
PspN4I	GGNNCC	8 cut(s)	6, 327, 1334, 1515, 1842, 1929, 2039, 2141
PspOMI	GGGCCC	2 cut(s)	1332, 2139
PspPI	GGNCC	7 cut(s)	413, 735, 1332, 1333, 2139, 2140, 2341
PsuI	RGATCY	1 cut(s)	116
PsyI	GACNNNGTC	3 cut(s)	40, 76, 196
PvuII	CAGCTG	1 cut(s)	1223
RsaI	GTAC	7 cut(s)	327, 1357, 1407, 1497, 2030, 2039, 2411
RsaNI	GTAC	7 cut(s)	326, 1356, 1406, 1496, 2029, 2038, 2410
RseI	CAYNNNNRTG	2 cut(s)	1646, 2024
SalI	GTCGAC	2 cut(s)	1445, 1790
SaqAI	TTAA	6 cut(s)	168, 249, 1278, 1509, 2274, 2319
SatI	GCNGC	8 cut(s)	173, 758, 819, 1119, 1517, 1833, 2491, 2494
Sau3AI	GATC	8 cut(s)	116, 562, 747, 1660, 1970, 2212, 2236, 2518
Sau96I	GGNCC	7 cut(s)	413, 735, 1332, 1333, 2139, 2140, 2341
SchI	GAGTC	4 cut(s)	214, 889, 1802, 1895
ScrFI	CCNGG	2 cut(s)	1581, 2178
SduI	GDGCHC	4 cut(s)	906, 1336, 1687, 2143
SfaNI	GCATC	2 cut(s)	1857, 2409
SfuI	TTCGAA	1 cut(s)	125
SinI	GGWCC	1 cut(s)	413
SmiMI	CAYNNNNRTG	2 cut(s)	1646, 2024
SmlI	CTYRAG	4 cut(s)	167, 1158, 1236, 2273
SmoI	CTYRAG	4 cut(s)	167, 1158, 1236, 2273
SnaBI	TACGTA	2 cut(s)	1409, 1543
SsiI	CCGC	9 cut(s)	589, 670, 757, 1118, 1517, 1725, 2372, 2406, 2431
SspI	AATATT	2 cut(s)	1020, 1627
SspMI	CTAG	3 cut(s)	1254, 1479, 1691
StyD4I	CCNGG	2 cut(s)	1579, 2176
StyI	CCWWGG	1 cut(s)	1401
TaaI	ACNGT	8 cut(s)	15, 666, 997, 1045, 1283, 1451, 1645, 2134
TaiI	ACGT	5 cut(s)	391, 1278, 1411, 1545, 2561
TaqI	TCGA	8 cut(s)	125, 253, 475, 714, 858, 1446, 1791, 1951
TaqII	GACCGA	1 cut(s)	2259
TauI	GCSGC	3 cut(s)	760, 1121, 1519
TfiI	GAWTC	4 cut(s)	152, 397, 940, 1856
Tru1I	TTAA	6 cut(s)	168, 249, 1278, 1509, 2274, 2319
Tru9I	TTAA	6 cut(s)	168, 249, 1278, 1509, 2274, 2319
TscAI	CASTG	2 cut(s)	195, 1648
TseFI	GTSAC	4 cut(s)	190, 198, 384, 1575
TseI	GCWGC	5 cut(s)	172, 818, 1832, 2490, 2493
Tsp45I	GTSAC	4 cut(s)	190, 198, 384, 1575
TspGWI	ACGGA	3 cut(s)	390, 921, 1357
TspRI	CASTG	2 cut(s)	195, 1648
Tth111I	GACNNNGTC	3 cut(s)	40, 76, 196
Van91I	CCANNNNNTGG	1 cut(s)	744
Vha464I	CTTAAG	2 cut(s)	167, 2273
VpaK11BI	GGWCC	1 cut(s)	413
XapI	RAATTY	4 cut(s)	378, 464, 575, 2365
XceI	RCATGY	2 cut(s)	1193, 2431
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1676
XmiI	GTMKAC	3 cut(s)	226, 1446, 1791
XmnI	GAANNNNTTC	1 cut(s)	1210
XspI	CTAG	3 cut(s)	1254, 1479, 1691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.