Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007290.1

Orthogroup ID

OG0001659

Physical Location & Seq

Genomic Coordinates Forward (+)

50547 .. 50957

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007290.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atgcaggaccctaataaatcactcagagatccagtttattatcgttgcaatccaatgccacatcattggaaagagatagggtccaattacaaggtctacccaacttatgattttgcttgtccatttgttgattccattcaaggtataactcatgcccttcgatctagtgaataccatgatcgcaacgcccggtactataggattcaagaggatatgggactgagaaaagtccatgtgtatgagttcagtaggttgaacatggtctatacactcctcagcaagcggaagcttttgtggtttgttcaaaatgacaaggtcaatggatgggatgatcctcgattcccaactgttcaaggaatcgtgtgtagaggtctcaaagttgaagcattgatacagttcattcttgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003824 GO:0004812 GO:0004818 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006424 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko00970 ko01100 ko01110 ko01120 map00860 map00970 map01100 map01110 map01120

Pfam Domains

Protein Families

GST_C GST_C_3 tRNA-synt_1c tRNA-synt_1c_C

Protein Analysis

136

Amino Acids

16.28

Weight (kDa)

8.97

Isoelectric Point (pI)

36.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26710
fragaria_vesca	FvH4_1g07040 FvH4_3g18420 FvH4_5g29940 FvH4_5g29940 FvH4_6g08750
malus_domestica	MD04G1184100.v1.1 MD12G1197300.v1.1
prunus_persica	Prupe.6G302600_v2.0.a1 Prupe.6G302600_v2.0.a1
pyrus_communis	pycom04g16310
rosa_chinensis	RchiOBHm_Chr1g0323481 RchiOBHm_Chr1g0323531 RchiOBHm_Chr1g0330311 RchiOBHm_Chr1g0330321 RchiOBHm_Chr1g0330421 RchiOBHm_Chr1g0330431 RchiOBHm_Chr3g0459011
rosa_laevigata	RLG00000025126 RLG00000029811 RLG00000030323 RLG00000030332
rosa_multiflora	Rmu_co8493977.1_g000001 Rmu_sc0002634.1_g000044 Rmu_sc0004343.1_g000022 Rmu_sc0007290.1_g000009 Rmu_sc0007290.1_g000010
rosa_roxburghii	Rroxscaffold_4G00319950 Rroxscaffold_4G00319960 Rroxscaffold_6G00420600
rosa_rugosa	Rorug01G0088900 Rorug03G0032500 Rorug05G0414800
rosa_samantha	Rh1AG106700 Rh1AG106800 Rh1CG056600 Rh1CG057900 Rh1CG102700 Rh1CG102800 Rh1DG060600 Rh1DG061700 Rh1DG110600 Rh3BG093600 Rh5DG502200 Rh6BG457000 Rh6BG457100
rosa_wichuraiana	Rw1G008430 Rw1G008550 Rw3G007770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	96
AciI	CCGC	1 cut(s)	283
AclWI	GGATC	2 cut(s)	23, 326
AfaI	GTAC	1 cut(s)	194
AgsI	TTSAA	6 cut(s)	140, 206, 256, 305, 353, 383
AluBI	AGCT	1 cut(s)	289
AluI	AGCT	1 cut(s)	289
Alw26I	GTCTC	1 cut(s)	377
AlwI	GGATC	2 cut(s)	23, 326
AspS9I	GGNCC	2 cut(s)	7, 81
AsuC2I	CCSGG	1 cut(s)	190
AvaII	GGWCC	2 cut(s)	7, 81
BarI	GAAGNNNNNNTAC	2 cut(s)	375, 407
BbvCI	CCTCAGC	1 cut(s)	275
BccI	CCATC	1 cut(s)	318
BcnI	CCSGG	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	377
BfaI	CTAG	1 cut(s)	165
BfmI	CTRYAG	1 cut(s)	196
Bme1390I	CCNGG	1 cut(s)	190
Bme18I	GGWCC	2 cut(s)	7, 81
BmgT120I	GGNCC	2 cut(s)	7, 81
BmiI	GGNNCC	2 cut(s)	9, 82
BmrFI	CCNGG	1 cut(s)	190
Bpu10I	CCTNAGC	1 cut(s)	275
BpuMI	CCSGG	1 cut(s)	190
BsaI	GGTCTC	1 cut(s)	377
Bse1I	ACTGG	1 cut(s)	32
BseGI	GGATG	2 cut(s)	329, 334
BseMII	CTCAG	3 cut(s)	37, 212, 289
BseNI	ACTGG	1 cut(s)	32
BseRI	GAGGAG	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	190
BslFI	GGGAC	1 cut(s)	231
BsmAI	GTCTC	1 cut(s)	377
BsmFI	GGGAC	1 cut(s)	231
Bso31I	GGTCTC	1 cut(s)	377
Bsp143I	GATC	4 cut(s)	28, 161, 178, 331
BspACI	CCGC	1 cut(s)	283
BspCNI	CTCAG	3 cut(s)	36, 213, 288
BspLI	GGNNCC	2 cut(s)	9, 82
BspPI	GGATC	2 cut(s)	23, 326
BspTNI	GGTCTC	1 cut(s)	377
BsrI	ACTGG	1 cut(s)	32
BssMI	GATC	4 cut(s)	28, 161, 178, 331
Bst4CI	ACNGT	2 cut(s)	349, 396
BstC8I	GCNNGC	1 cut(s)	281
BstDEI	CTNAG	3 cut(s)	23, 221, 275
BstF5I	GGATG	2 cut(s)	329, 334
BstKTI	GATC	4 cut(s)	31, 164, 181, 334
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	4 cut(s)	28, 161, 178, 331
BstSCI	CCNGG	1 cut(s)	188
BstSFI	CTRYAG	1 cut(s)	196
BstX2I	RGATCY	1 cut(s)	28
BstXI	CCANNNNNNTGG	1 cut(s)	66
BstYI	RGATCY	1 cut(s)	28
BtsCI	GGATG	2 cut(s)	329, 334
Cac8I	GCNNGC	1 cut(s)	281
Cfr13I	GGNCC	2 cut(s)	7, 81
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	4 cut(s)	152, 176, 233, 259
CviJI	RGCY	1 cut(s)	289
CviKI_1	RGCY	1 cut(s)	289
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	3 cut(s)	23, 221, 275
DpnI	GATC	4 cut(s)	30, 163, 180, 333
DpnII	GATC	4 cut(s)	28, 161, 178, 331
Eco31I	GGTCTC	1 cut(s)	377
Eco47I	GGWCC	2 cut(s)	7, 81
EcoO109I	RGGNCCY	1 cut(s)	7
FaeI	CATG	4 cut(s)	155, 179, 236, 262
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	4 cut(s)	151, 175, 232, 258
FblI	GTMKAC	1 cut(s)	96
FokI	GGATG	2 cut(s)	336, 341
FspBI	CTAG	1 cut(s)	165
HapII	CCGG	1 cut(s)	190
Hin1II	CATG	4 cut(s)	155, 179, 236, 262
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	4 cut(s)	131, 202, 339, 357
HpaII	CCGG	1 cut(s)	190
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	1 cut(s)	26
Hpy188III	TCNNGA	2 cut(s)	206, 404
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	1 cut(s)	167
HpyCH4III	ACNGT	2 cut(s)	349, 396
HpyCH4V	TGCA	2 cut(s)	4, 48
HpyF3I	CTNAG	3 cut(s)	23, 221, 275
Hsp92II	CATG	4 cut(s)	155, 179, 236, 262
Kzo9I	GATC	4 cut(s)	28, 161, 178, 331
LpnPI	CCDG	2 cut(s)	45, 203
MaeI	CTAG	1 cut(s)	165
MalI	GATC	4 cut(s)	30, 163, 180, 333
MboI	GATC	4 cut(s)	28, 161, 178, 331
MflI	RGATCY	1 cut(s)	28
MluCI	AATT	1 cut(s)	85
MnlI	CCTC	4 cut(s)	202, 284, 345, 362
MslI	CAYNNNNRTG	1 cut(s)	237
MspI	CCGG	1 cut(s)	190
MspR9I	CCNGG	1 cut(s)	190
NciI	CCSGG	1 cut(s)	190
NdeII	GATC	4 cut(s)	28, 161, 178, 331
NlaIII	CATG	4 cut(s)	155, 179, 236, 262
NlaIV	GGNNCC	2 cut(s)	9, 82
PfeI	GAWTC	4 cut(s)	131, 202, 339, 357
PflFI	GACNNNGTC	1 cut(s)	314
PpuMI	RGGWCCY	1 cut(s)	7
Psp5II	RGGWCCY	1 cut(s)	7
PspN4I	GGNNCC	2 cut(s)	9, 82
PspPI	GGNCC	2 cut(s)	7, 81
PspPPI	RGGWCCY	1 cut(s)	7
PsuI	RGATCY	1 cut(s)	28
PsyI	GACNNNGTC	1 cut(s)	314
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
RseI	CAYNNNNRTG	1 cut(s)	237
Sau3AI	GATC	4 cut(s)	28, 161, 178, 331
Sau96I	GGNCC	2 cut(s)	7, 81
ScrFI	CCNGG	1 cut(s)	190
SetI	ASST	6 cut(s)	96, 145, 254, 291, 318, 373
SfcI	CTRYAG	1 cut(s)	196
SinI	GGWCC	2 cut(s)	7, 81
SmiMI	CAYNNNNRTG	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
Sse9I	AATT	1 cut(s)	85
SsiI	CCGC	1 cut(s)	283
SspMI	CTAG	1 cut(s)	165
StyD4I	CCNGG	1 cut(s)	188
TaaI	ACNGT	2 cut(s)	349, 396
TaqI	TCGA	2 cut(s)	160, 337
TasI	AATT	1 cut(s)	85
TfiI	GAWTC	4 cut(s)	131, 202, 339, 357
TspDTI	ATGAA	1 cut(s)	388
Tth111I	GACNNNGTC	1 cut(s)	314
VpaK11BI	GGWCC	2 cut(s)	7, 81
XmiI	GTMKAC	1 cut(s)	96
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.