Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001659

Physical Location & Seq

Genomic Coordinates Reverse (-)

59630625 .. 59631476

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030323

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGAATGGGACAAACTCTGGATAATTAACAAGAAGATTGCTGATCCTCTTGAGGAAGGCGAGAATTTTCTTGATGTGCTTAACCCATGTACCGAAAAGGAGACAGCAGCTCTTGGGGATCCCAACATGCGAAATCAGAAGCGTGGAGATTCATTGCAACTTGAGAGGAAAGGATACCTAAGCTGTGATGTTCCCTACCTCAGGCTTTCAAAGCATATTAATTGTTCTCTTTGGAATCCCCGATGGGAGGCAGCAGGCTGGGTCAAAGTAAAGAACTTCATCAAGAATATTTGGCTTCAGAATGTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003824 GO:0004812 GO:0004818 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006424 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko00970 ko01100 ko01110 ko01120 map00860 map00970 map01100 map01110 map01120

Pfam Domains

Protein Families

GST_C GST_C_3 tRNA-synt_1c tRNA-synt_1c_C

Protein Analysis

104

Amino Acids

12.1

Weight (kDa)

7.69

Isoelectric Point (pI)

46.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1c_C2	PF20974	15 - 63	2.9e-08	tRNA synthetases class I (E and Q), anti-codon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26710
fragaria_vesca	FvH4_1g07040 FvH4_3g18420 FvH4_5g29940 FvH4_5g29940 FvH4_6g08750
malus_domestica	MD04G1184100.v1.1 MD12G1197300.v1.1
prunus_persica	Prupe.6G302600_v2.0.a1 Prupe.6G302600_v2.0.a1
pyrus_communis	pycom04g16310
rosa_chinensis	RchiOBHm_Chr1g0323481 RchiOBHm_Chr1g0323531 RchiOBHm_Chr1g0330311 RchiOBHm_Chr1g0330321 RchiOBHm_Chr1g0330421 RchiOBHm_Chr1g0330431 RchiOBHm_Chr3g0459011
rosa_laevigata	RLG00000025126 RLG00000029811 RLG00000030323 RLG00000030332
rosa_multiflora	Rmu_co8493977.1_g000001 Rmu_sc0002634.1_g000044 Rmu_sc0004343.1_g000022 Rmu_sc0007290.1_g000009 Rmu_sc0007290.1_g000010
rosa_roxburghii	Rroxscaffold_4G00319950 Rroxscaffold_4G00319960 Rroxscaffold_6G00420600
rosa_rugosa	Rorug01G0088900 Rorug03G0032500 Rorug05G0414800
rosa_samantha	Rh1AG106700 Rh1AG106800 Rh1CG056600 Rh1CG057900 Rh1CG102700 Rh1CG102800 Rh1DG060600 Rh1DG061700 Rh1DG110600 Rh3BG093600 Rh5DG502200 Rh6BG457000 Rh6BG457100
rosa_wichuraiana	Rw1G008430 Rw1G008550 Rw3G007770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	38, 113, 126
AcsI	RAATTY	1 cut(s)	64
AcuI	CTGAAG	1 cut(s)	281
AfaI	GTAC	1 cut(s)	91
AfiI	CCNNNNNNNGG	2 cut(s)	201, 247
AgsI	TTSAA	1 cut(s)	210
AluBI	AGCT	2 cut(s)	110, 183
AluI	AGCT	2 cut(s)	110, 183
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	3 cut(s)	38, 113, 126
ApeKI	GCWGC	2 cut(s)	107, 251
ApoI	RAATTY	1 cut(s)	64
AseI	ATTAAT	1 cut(s)	219
AxyI	CCTNAGG	1 cut(s)	200
BaeI	ACNNNNGTAYC	2 cut(s)	73, 106
BamHI	GGATCC	1 cut(s)	118
BbvI	GCAGC	2 cut(s)	119, 263
BccI	CCATC	1 cut(s)	237
BciVI	GTATCC	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	95
BfuI	GTATCC	1 cut(s)	167
BisI	GCNGC	2 cut(s)	108, 252
BlsI	GCNGC	2 cut(s)	109, 253
BmiI	GGNNCC	1 cut(s)	120
Bpu10I	CCTNAGC	1 cut(s)	179
BpuEI	CTTGAG	2 cut(s)	71, 182
Bsc4I	CCNNNNNNNGG	2 cut(s)	201, 247
Bse21I	CCTNAGG	1 cut(s)	200
Bse3DI	GCAATG	1 cut(s)	152
BseLI	CCNNNNNNNGG	2 cut(s)	201, 247
BseMI	GCAATG	1 cut(s)	152
BseMII	CTCAG	1 cut(s)	214
BseXI	GCAGC	2 cut(s)	119, 263
BseYI	CCCAGC	1 cut(s)	258
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	2 cut(s)	201, 247
BsmAI	GTCTC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	23
Bsp143I	GATC	2 cut(s)	43, 118
BspCNI	CTCAG	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	120
BspPI	GGATC	3 cut(s)	38, 113, 126
BsrDI	GCAATG	1 cut(s)	152
BssMI	GATC	2 cut(s)	43, 118
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	2 cut(s)	179, 200
BstENI	CCTNNNNNAGG	1 cut(s)	199
BstKTI	GATC	2 cut(s)	46, 121
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	2 cut(s)	43, 118
BstMWI	GCNNNNNNNGC	1 cut(s)	211
BstNSI	RCATGY	1 cut(s)	130
BstV1I	GCAGC	2 cut(s)	119, 263
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
Bsu36I	CCTNAGG	1 cut(s)	200
BsuI	GTATCC	1 cut(s)	167
Cac8I	GCNNGC	1 cut(s)	256
Csp6I	GTAC	1 cut(s)	90
CviAII	CATG	2 cut(s)	87, 127
CviJI	RGCY	5 cut(s)	110, 183, 205, 258, 295
CviKI_1	RGCY	5 cut(s)	110, 183, 205, 258, 295
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	2 cut(s)	179, 200
DpnI	GATC	2 cut(s)	45, 120
DpnII	GATC	2 cut(s)	43, 118
Eco57I	CTGAAG	1 cut(s)	281
Eco81I	CCTNAGG	1 cut(s)	200
EcoNI	CCTNNNNNAGG	1 cut(s)	199
FaeI	CATG	2 cut(s)	90, 130
FaiI	YATR	3 cut(s)	88, 128, 216
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	2 cut(s)	86, 126
Fnu4HI	GCNGC	2 cut(s)	108, 252
Fsp4HI	GCNGC	2 cut(s)	108, 252
GluI	GCNGC	2 cut(s)	108, 252
GsaI	CCCAGC	1 cut(s)	262
Hin1II	CATG	2 cut(s)	90, 130
HinfI	GANTC	2 cut(s)	149, 235
Hpy188I	TCNGA	2 cut(s)	138, 300
Hpy188III	TCNNGA	4 cut(s)	19, 50, 71, 283
HpyAV	CCTTC	1 cut(s)	50
HpyCH4V	TGCA	1 cut(s)	157
HpyF10VI	GCNNNNNNNGC	1 cut(s)	211
HpyF3I	CTNAG	2 cut(s)	179, 200
Hsp92II	CATG	2 cut(s)	90, 130
Kzo9I	GATC	2 cut(s)	43, 118
LpnPI	CCDG	4 cut(s)	4, 187, 240, 244
Lsp1109I	GCAGC	2 cut(s)	119, 263
MalI	GATC	2 cut(s)	45, 120
MboI	GATC	2 cut(s)	43, 118
MboII	GAAGA	1 cut(s)	46
MflI	RGATCY	1 cut(s)	118
MluCI	AATT	3 cut(s)	24, 64, 220
MnlI	CCTC	5 cut(s)	46, 57, 159, 209, 241
MseI	TTAA	4 cut(s)	27, 81, 219, 310
MwoI	GCNNNNNNNGC	1 cut(s)	211
NdeII	GATC	2 cut(s)	43, 118
NlaIII	CATG	2 cut(s)	90, 130
NlaIV	GGNNCC	1 cut(s)	120
NspI	RCATGY	1 cut(s)	130
PfeI	GAWTC	2 cut(s)	149, 235
PkrI	GCNGC	2 cut(s)	109, 253
PshBI	ATTAAT	1 cut(s)	219
PspFI	CCCAGC	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	120
PsuI	RGATCY	1 cut(s)	118
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
SaqAI	TTAA	4 cut(s)	27, 81, 219, 310
SatI	GCNGC	2 cut(s)	108, 252
Sau3AI	GATC	2 cut(s)	43, 118
SetI	ASST	4 cut(s)	112, 180, 185, 201
SmlI	CTYRAG	2 cut(s)	50, 161
SmoI	CTYRAG	2 cut(s)	50, 161
Sse9I	AATT	3 cut(s)	24, 64, 220
SspI	AATATT	1 cut(s)	289
TasI	AATT	3 cut(s)	24, 64, 220
TfiI	GAWTC	2 cut(s)	149, 235
Tru1I	TTAA	4 cut(s)	27, 81, 219, 310
Tru9I	TTAA	4 cut(s)	27, 81, 219, 310
TseI	GCWGC	2 cut(s)	107, 251
TspDTI	ATGAA	2 cut(s)	141, 268
VspI	ATTAAT	1 cut(s)	219
XagI	CCTNNNNNAGG	1 cut(s)	199
XapI	RAATTY	1 cut(s)	64
XceI	RCATGY	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.