Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001659

Physical Location & Seq

Genomic Coordinates Reverse (-)

18566257 .. 18567102

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG106700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGAATGGGATAAACTGTGGACTCTTAATAAGAAGATTATTGATCCTGTATGCCCAAGACATACTGCAGTCATTGAAGAGGGACGAGTGTTATTGACTCTCTCTAATGGCCCTGAGAAGCCATTTGTCCGCATAATACCTAGGCATAAGAAGTATGAAGGTGCTGGAGAGAAGGCAACAACATTCACAAGGAGCATATGGATAGATCGAGCTGATGCAGAGTCGATATCAGTAGATGAGGAAGTGACATTGATGGATTGGGGGAATGCCATTGTTAAGAAGATTGACAAAGACCAAGATGGAAATCTTGCGCTCACAGGGGTTTTGCATCTTGAAGGATCTGTGAAAACCACCAAACTGAAGCTTACCTGGCTGCCTGAAATAGATGAACTGGTTAAGATCTCGTTGATGGAGTTTGATTATCTGATAACAAAGAAGAAGCTTGAGGAAGGCGAGGATTTCGTTGATGTGCTCAACCCATGTACCGAAAAGGAGACAGCAGCCCTTGGGGATCCCAACATGCGAAATCTGAAGTGTGGAGATGTAGTGCAACTTGAGAGGAAAGGATACTTCAGATGTGATGTTCCCTACCTCAAGCCTTCAAAGCCTATTGTTCTCTTTGCAATCCCCGATGGCAGGCAGCAGGCTGGGTTAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003824 GO:0004812 GO:0004818 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006424 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko00970 ko01100 ko01110 ko01120 map00860 map00970 map01100 map01110 map01120

Pfam Domains

Protein Families

GST_C GST_C_3 tRNA-synt_1c tRNA-synt_1c_C

Protein Analysis

219

Amino Acids

24.83

Weight (kDa)

5.77

Isoelectric Point (pI)

21.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1c_C	PF03950	18 - 103	3.8e-17	tRNA synthetases class I (E and Q), anti-codon binding domain
tRNA-synt_1c_C2	PF20974	121 - 194	6.1e-16	tRNA synthetases class I (E and Q), anti-codon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26710
fragaria_vesca	FvH4_1g07040 FvH4_3g18420 FvH4_5g29940 FvH4_5g29940 FvH4_6g08750
malus_domestica	MD04G1184100.v1.1 MD12G1197300.v1.1
prunus_persica	Prupe.6G302600_v2.0.a1 Prupe.6G302600_v2.0.a1
pyrus_communis	pycom04g16310
rosa_chinensis	RchiOBHm_Chr1g0323481 RchiOBHm_Chr1g0323531 RchiOBHm_Chr1g0330311 RchiOBHm_Chr1g0330321 RchiOBHm_Chr1g0330421 RchiOBHm_Chr1g0330431 RchiOBHm_Chr3g0459011
rosa_laevigata	RLG00000025126 RLG00000029811 RLG00000030323 RLG00000030332
rosa_multiflora	Rmu_co8493977.1_g000001 Rmu_sc0002634.1_g000044 Rmu_sc0004343.1_g000022 Rmu_sc0007290.1_g000009 Rmu_sc0007290.1_g000010
rosa_roxburghii	Rroxscaffold_4G00319950 Rroxscaffold_4G00319960 Rroxscaffold_6G00420600
rosa_rugosa	Rorug01G0088900 Rorug03G0032500 Rorug05G0414800
rosa_samantha	Rh1AG106700 Rh1AG106800 Rh1CG056600 Rh1CG057900 Rh1CG102700 Rh1CG102800 Rh1DG060600 Rh1DG061700 Rh1DG110600 Rh3BG093600 Rh5DG502200 Rh6BG457000 Rh6BG457100
rosa_wichuraiana	Rw1G008430 Rw1G008550 Rw3G007770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	130
AclWI	GGATC	4 cut(s)	38, 346, 506, 519
AcuI	CTGAAG	3 cut(s)	380, 551, 556
AfaI	GTAC	1 cut(s)	484
AfiI	CCNNNNNNNGG	1 cut(s)	636
AgsI	TTSAA	3 cut(s)	77, 335, 603
AjnI	CCWGG	1 cut(s)	368
AluBI	AGCT	3 cut(s)	212, 364, 442
AluI	AGCT	3 cut(s)	212, 364, 442
Alw21I	GWGCWC	1 cut(s)	474
Alw26I	GTCTC	1 cut(s)	488
AlwI	GGATC	4 cut(s)	38, 346, 506, 519
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	3 cut(s)	373, 500, 640
AspA2I	CCTAGG	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	313
AspS9I	GGNCC	1 cut(s)	110
AvrII	CCTAGG	1 cut(s)	140
BaeI	ACNNNNGTAYC	2 cut(s)	466, 499
BamHI	GGATCC	1 cut(s)	511
Bbv12I	GWGCWC	1 cut(s)	474
BbvI	GCAGC	3 cut(s)	360, 512, 652
BccI	CCATC	4 cut(s)	247, 293, 403, 626
BciT130I	CCWGG	1 cut(s)	370
BciVI	GTATCC	1 cut(s)	560
BcoDI	GTCTC	1 cut(s)	488
BfaI	CTAG	1 cut(s)	141
BfmI	CTRYAG	1 cut(s)	66
BfuI	GTATCC	1 cut(s)	560
BglII	AGATCT	1 cut(s)	399
BisI	GCNGC	3 cut(s)	374, 501, 641
BlnI	CCTAGG	1 cut(s)	140
BlsI	GCNGC	3 cut(s)	375, 502, 642
Bme1390I	CCNGG	1 cut(s)	370
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	513
BmrFI	CCNGG	1 cut(s)	370
BmsI	GCATC	2 cut(s)	205, 337
BpmI	CTGGAG	1 cut(s)	186
BpuEI	CTTGAG	3 cut(s)	464, 575, 578
BsaBI	GATNNNNATC	1 cut(s)	303
BsaJI	CCNNGG	2 cut(s)	140, 505
BsaXI	ACNNNNNCTCC	2 cut(s)	531, 561
Bsc4I	CCNNNNNNNGG	1 cut(s)	636
Bse1I	ACTGG	1 cut(s)	396
Bse8I	GATNNNNATC	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	370
BseDI	CCNNGG	2 cut(s)	140, 505
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	636
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	396
BseXI	GCAGC	3 cut(s)	360, 512, 652
BseYI	CCCAGC	1 cut(s)	647
BshFI	GGCC	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	474
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	636
BsmAI	GTCTC	1 cut(s)	488
BsmFI	GGGAC	1 cut(s)	96
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp143I	GATC	5 cut(s)	43, 205, 338, 399, 511
BspACI	CCGC	1 cut(s)	130
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	513
BspMAI	CTGCAG	1 cut(s)	70
BspPI	GGATC	4 cut(s)	38, 346, 506, 519
BsrI	ACTGG	1 cut(s)	396
BssECI	CCNNGG	2 cut(s)	140, 505
BssMI	GATC	5 cut(s)	43, 205, 338, 399, 511
BssT1I	CCWWGG	2 cut(s)	140, 505
Bst2UI	CCWGG	1 cut(s)	370
Bst4CI	ACNGT	1 cut(s)	18
Bst6I	CTCTTC	1 cut(s)	72
BstC8I	GCNNGC	2 cut(s)	638, 645
BstDEI	CTNAG	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	5 cut(s)	46, 208, 341, 402, 514
BstMAI	GTCTC	1 cut(s)	488
BstMBI	GATC	5 cut(s)	43, 205, 338, 399, 511
BstMWI	GCNNNNNNNGC	2 cut(s)	370, 604
BstNI	CCWGG	1 cut(s)	370
BstNSI	RCATGY	1 cut(s)	523
BstSCI	CCNGG	1 cut(s)	368
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	3 cut(s)	360, 512, 652
BstX2I	RGATCY	3 cut(s)	338, 399, 511
BstYI	RGATCY	3 cut(s)	338, 399, 511
BsuI	GTATCC	1 cut(s)	560
BsuRI	GGCC	1 cut(s)	111
Cac8I	GCNNGC	2 cut(s)	638, 645
CfoI	GCGC	1 cut(s)	313
Cfr13I	GGNCC	1 cut(s)	110
Csp6I	GTAC	1 cut(s)	483
CviAII	CATG	2 cut(s)	480, 520
CviQI	GTAC	1 cut(s)	483
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	5 cut(s)	45, 207, 340, 401, 513
DpnII	GATC	5 cut(s)	43, 205, 338, 399, 511
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
Eco130I	CCWWGG	2 cut(s)	140, 505
Eco32I	GATATC	1 cut(s)	228
Eco57I	CTGAAG	3 cut(s)	380, 551, 556
EcoRII	CCWGG	1 cut(s)	368
EcoRV	GATATC	1 cut(s)	228
EcoT14I	CCWWGG	2 cut(s)	140, 505
ErhI	CCWWGG	2 cut(s)	140, 505
FaeI	CATG	2 cut(s)	483, 523
FaiI	YATR	9 cut(s)	52, 63, 134, 147, 156, 197, 199, 481, 521
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	2 cut(s)	479, 519
FauNDI	CATATG	1 cut(s)	197
Fnu4HI	GCNGC	3 cut(s)	374, 501, 641
Fsp4HI	GCNGC	3 cut(s)	374, 501, 641
FspBI	CTAG	1 cut(s)	141
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	3 cut(s)	374, 501, 641
GsaI	CCCAGC	1 cut(s)	651
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	111
HhaI	GCGC	1 cut(s)	313
Hin1II	CATG	2 cut(s)	483, 523
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HindIII	AAGCTT	2 cut(s)	362, 440
HinfI	GANTC	3 cut(s)	22, 97, 221
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	3 cut(s)	426, 531, 575
Hpy188III	TCNNGA	1 cut(s)	332
Hpy8I	GTNNAC	1 cut(s)	21
HpyAV	CCTTC	5 cut(s)	152, 166, 329, 443, 609
HpyCH4III	ACNGT	1 cut(s)	18
HpyCH4V	TGCA	5 cut(s)	68, 218, 328, 550, 623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	370, 604
HpyF3I	CTNAG	1 cut(s)	114
Hsp92II	CATG	2 cut(s)	483, 523
HspAI	GCGC	1 cut(s)	311
Kzo9I	GATC	5 cut(s)	43, 205, 338, 399, 511
LmnI	GCTCC	1 cut(s)	192
Lsp1109I	GCAGC	3 cut(s)	360, 512, 652
LweI	GCATC	2 cut(s)	205, 337
MaeI	CTAG	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	5 cut(s)	45, 207, 340, 401, 513
MboI	GATC	5 cut(s)	43, 205, 338, 399, 511
MboII	GAAGA	4 cut(s)	46, 89, 292, 448
MflI	RGATCY	3 cut(s)	338, 399, 511
MhlI	GDGCHC	1 cut(s)	474
MlyI	GAGTC	3 cut(s)	16, 91, 230
MnlI	CCTC	6 cut(s)	73, 232, 439, 448, 552, 602
MseI	TTAA	4 cut(s)	27, 276, 396, 653
MspR9I	CCNGG	1 cut(s)	370
Mva1269I	GAATGC	1 cut(s)	271
MvaI	CCWGG	1 cut(s)	370
MwoI	GCNNNNNNNGC	2 cut(s)	370, 604
NdeI	CATATG	1 cut(s)	197
NdeII	GATC	5 cut(s)	43, 205, 338, 399, 511
NlaIII	CATG	2 cut(s)	483, 523
NlaIV	GGNNCC	1 cut(s)	513
NmuCI	GTSAC	1 cut(s)	244
NspI	RCATGY	1 cut(s)	523
PctI	GAATGC	1 cut(s)	271
PkrI	GCNGC	3 cut(s)	375, 502, 642
PleI	GAGTC	3 cut(s)	16, 91, 229
PpsI	GAGTC	3 cut(s)	16, 91, 229
Psp6I	CCWGG	1 cut(s)	368
PspFI	CCCAGC	1 cut(s)	647
PspGI	CCWGG	1 cut(s)	368
PspN4I	GGNNCC	1 cut(s)	513
PspPI	GGNCC	1 cut(s)	110
PstI	CTGCAG	1 cut(s)	70
PsuI	RGATCY	3 cut(s)	338, 399, 511
RsaI	GTAC	1 cut(s)	484
RsaNI	GTAC	1 cut(s)	483
SaqAI	TTAA	4 cut(s)	27, 276, 396, 653
SatI	GCNGC	3 cut(s)	374, 501, 641
Sau3AI	GATC	5 cut(s)	43, 205, 338, 399, 511
Sau96I	GGNCC	1 cut(s)	110
SchI	GAGTC	3 cut(s)	16, 91, 230
ScrFI	CCNGG	1 cut(s)	370
SduI	GDGCHC	1 cut(s)	474
SetI	ASST	7 cut(s)	142, 163, 214, 366, 371, 444, 594
SfaNI	GCATC	2 cut(s)	205, 337
SfcI	CTRYAG	1 cut(s)	66
SmlI	CTYRAG	3 cut(s)	443, 554, 593
SmoI	CTYRAG	3 cut(s)	443, 554, 593
SsiI	CCGC	1 cut(s)	130
SspMI	CTAG	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	368
StyI	CCWWGG	2 cut(s)	140, 505
TaaI	ACNGT	1 cut(s)	18
TaqI	TCGA	2 cut(s)	208, 224
Tru1I	TTAA	4 cut(s)	27, 276, 396, 653
Tru9I	TTAA	4 cut(s)	27, 276, 396, 653
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	3 cut(s)	373, 500, 640
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	2 cut(s)	171, 402
XceI	RCATGY	1 cut(s)	523
XmaJI	CCTAGG	1 cut(s)	140
XspI	CTAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.