Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001659

Physical Location & Seq

Genomic Coordinates Forward (+)

11768643 .. 11769338

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g18420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGGACTGAGAAGAGTGCATATATATGAGTTCAGTAGGTTGAACATGGTCTACACACTCCTTAGCAAGCGCAAGCTTTTGTGGTTTGTTCAAAATGAGAAGGTCAATGGATGGGATGATCCTCGATTTCCCACTGTTCAAGGAATTGTGCGCAGAGGTCTCAAAATTGAAGCATTGATACAATTCATTCTTGAGATGGTGTTTGGACAGACGGATCTTGGGTTTTTTTCAACTGGTCTAGATCAGCGTGTCAGGTGTTGGCGTCTTCAGGAGGATGGTAAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003824 GO:0004812 GO:0004818 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006424 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko00970 ko01100 ko01110 ko01120 map00860 map00970 map01100 map01110 map01120

Pfam Domains

Protein Families

GST_C GST_C_3 tRNA-synt_1c tRNA-synt_1c_C

Protein Analysis

96

Amino Acids

11.29

Weight (kDa)

9.89

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1c	PF00749	4 - 64	5.7e-15	tRNA synthetases class I (E and Q), catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26710
fragaria_vesca	FvH4_1g07040 FvH4_3g18420 FvH4_5g29940 FvH4_5g29940 FvH4_6g08750
malus_domestica	MD04G1184100.v1.1 MD12G1197300.v1.1
prunus_persica	Prupe.6G302600_v2.0.a1 Prupe.6G302600_v2.0.a1
pyrus_communis	pycom04g16310
rosa_chinensis	RchiOBHm_Chr1g0323481 RchiOBHm_Chr1g0323531 RchiOBHm_Chr1g0330311 RchiOBHm_Chr1g0330321 RchiOBHm_Chr1g0330421 RchiOBHm_Chr1g0330431 RchiOBHm_Chr3g0459011
rosa_laevigata	RLG00000025126 RLG00000029811 RLG00000030323 RLG00000030332
rosa_multiflora	Rmu_co8493977.1_g000001 Rmu_sc0002634.1_g000044 Rmu_sc0004343.1_g000022 Rmu_sc0007290.1_g000009 Rmu_sc0007290.1_g000010
rosa_roxburghii	Rroxscaffold_4G00319950 Rroxscaffold_4G00319960 Rroxscaffold_6G00420600
rosa_rugosa	Rorug01G0088900 Rorug03G0032500 Rorug05G0414800
rosa_samantha	Rh1AG106700 Rh1AG106800 Rh1CG056600 Rh1CG057900 Rh1CG102700 Rh1CG102800 Rh1DG060600 Rh1DG061700 Rh1DG110600 Rh3BG093600 Rh5DG502200 Rh6BG457000 Rh6BG457100
rosa_wichuraiana	Rw1G008430 Rw1G008550 Rw3G007770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	152
AccI	GTMKAC	1 cut(s)	51
AclWI	GGATC	2 cut(s)	113, 222
AcuI	CTGAAG	1 cut(s)	251
AcyI	GRCGYC	1 cut(s)	262
AgsI	TTSAA	5 cut(s)	43, 92, 140, 170, 231
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	2 cut(s)	113, 222
AspLEI	GCGC	2 cut(s)	72, 153
BarI	GAAGNNNNNNTAC	2 cut(s)	162, 194
BbsI	GAAGAC	1 cut(s)	257
BccI	CCATC	3 cut(s)	105, 190, 269
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	239
BpiI	GAAGAC	1 cut(s)	257
Bpu10I	CCTNAGC	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	212
BsaHI	GRCGYC	1 cut(s)	262
BsaI	GGTCTC	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	238
BseGI	GGATG	3 cut(s)	116, 121, 280
BseNI	ACTGG	1 cut(s)	238
BslFI	GGGAC	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	18
Bso31I	GGTCTC	1 cut(s)	164
Bsp143I	GATC	3 cut(s)	118, 214, 241
BspPI	GGATC	2 cut(s)	113, 222
BspTNI	GGTCTC	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	238
BssMI	GATC	3 cut(s)	118, 214, 241
BssNI	GRCGYC	1 cut(s)	262
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	1 cut(s)	7
BstACI	GRCGYC	1 cut(s)	262
BstC8I	GCNNGC	2 cut(s)	68, 74
BstDEI	CTNAG	2 cut(s)	8, 62
BstF5I	GGATG	3 cut(s)	116, 121, 280
BstHHI	GCGC	2 cut(s)	72, 153
BstKTI	GATC	3 cut(s)	121, 217, 244
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	3 cut(s)	118, 214, 241
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BtsCI	GGATG	3 cut(s)	116, 121, 280
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	68, 74
CfoI	GCGC	2 cut(s)	72, 153
CseI	GACGC	1 cut(s)	251
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	1 cut(s)	76
CviKI_1	RGCY	1 cut(s)	76
DdeI	CTNAG	2 cut(s)	8, 62
DpnI	GATC	3 cut(s)	120, 216, 243
DpnII	GATC	3 cut(s)	118, 214, 241
Eam1104I	CTCTTC	1 cut(s)	7
EarI	CTCTTC	1 cut(s)	7
Eco31I	GGTCTC	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	251
FaeI	CATG	1 cut(s)	49
FaiI	YATR	6 cut(s)	21, 23, 25, 27, 47, 286
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	1 cut(s)	45
FblI	GTMKAC	1 cut(s)	51
FokI	GGATG	2 cut(s)	123, 128
FspBI	CTAG	1 cut(s)	239
FspI	TGCGCA	1 cut(s)	152
GlaI	GCGC	2 cut(s)	71, 152
HgaI	GACGC	1 cut(s)	251
HhaI	GCGC	2 cut(s)	72, 153
Hin1I	GRCGYC	1 cut(s)	262
Hin1II	CATG	1 cut(s)	49
Hin6I	GCGC	2 cut(s)	70, 151
HinP1I	GCGC	2 cut(s)	70, 151
HindIII	AAGCTT	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188III	TCNNGA	3 cut(s)	191, 239, 269
Hpy8I	GTNNAC	1 cut(s)	52
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4V	TGCA	1 cut(s)	19
HpyF3I	CTNAG	2 cut(s)	8, 62
Hsp92I	GRCGYC	1 cut(s)	262
Hsp92II	CATG	1 cut(s)	49
HspAI	GCGC	2 cut(s)	70, 151
Kzo9I	GATC	3 cut(s)	118, 214, 241
LpnPI	CCDG	3 cut(s)	219, 238, 254
MaeI	CTAG	1 cut(s)	239
MalI	GATC	3 cut(s)	120, 216, 243
MboI	GATC	3 cut(s)	118, 214, 241
MboII	GAAGA	2 cut(s)	24, 257
MflI	RGATCY	1 cut(s)	214
MluCI	AATT	3 cut(s)	144, 165, 182
MnlI	CCTC	3 cut(s)	132, 149, 265
MslI	CAYNNNNRTG	1 cut(s)	24
NdeII	GATC	3 cut(s)	118, 214, 241
NlaIII	CATG	1 cut(s)	49
NsbI	TGCGCA	1 cut(s)	152
PsrI	GAACNNNNNNTAC	2 cut(s)	35, 67
PsuI	RGATCY	1 cut(s)	214
RseI	CAYNNNNRTG	1 cut(s)	24
Sau3AI	GATC	3 cut(s)	118, 214, 241
SetI	ASST	5 cut(s)	41, 78, 105, 160, 257
SmiMI	CAYNNNNRTG	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	3 cut(s)	144, 165, 182
SspMI	CTAG	1 cut(s)	239
TaaI	ACNGT	1 cut(s)	136
TaqI	TCGA	1 cut(s)	124
TasI	AATT	3 cut(s)	144, 165, 182
TscAI	CASTG	1 cut(s)	139
TspDTI	ATGAA	1 cut(s)	175
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	1 cut(s)	139
XbaI	TCTAGA	1 cut(s)	238
XmiI	GTMKAC	1 cut(s)	51
XspI	CTAG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.