Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001659

Physical Location & Seq

Genomic Coordinates Reverse (-)

7449425 .. 7452295

Gene Structure 2871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG093600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2166 bp

ATGGAGCTCAAGTCGCTTTCCTTCCCCGCCGACAACCCTCCGCTCTCAGTACTCGCGGCGGCCAAGCTCGCCGGGACTTCGCTCCCCACCGACGCCTCTCTCGCCCCCGATTCTCCTCCGGTTCTTCACTTCTCCGACGGGCGAAACCTGCGCGGCGTCTCGGCGCTTCTTCGTTATTTCGGTCGTGTTTCGAATCTGTGCGGCGGCGATGCGTTTCAAGATGCTCAGATTGTTGAGTGGCTTGAGTACGCTCCGGTGCTTTCAGTCGGCTCTGCTTTCGAGAACGCCTGCAAGCATTTAGATGAGTATTTGGGAAGCAGAACCTTCTTGGTTGATCATTCGTTTTCGATGGCCGATATCGCAATCTGGTCAGGCCTTGCAGGAGCTGGGCTTAGATGGGAGAGTTTGAGGAAGTCAAAGAAGTATGTAAATCTTACTAGGTGGTATGGTTCGATATTGGCGGAACATGGTGATGCATTGAATCAAGTAACAGGTGCGTATGTTGGCAAGAAAGGCTCAGCGAAATCGAAAGAGAACCCGGCCAGTCAGCAGTCGAAGGGAGTAAATGTAGATGTAGTGAAAGCAGGAACCAACAGGGGAACATTCGAGGTGGATCTTCCGGAGGCTGAGGTTGGAAAGGTGAAGTTGAGGTTTGCGCCGGAGCCGAGTGGTTATCTTCACATTGGGCACTCGAAAGCTGCGTTGTTGAATCAGTACTTTGCTCAGCGGTATCAAGGTCAGGTTATTGTGCGGTTTGATGATACAAATCCTGCTAAAGAAAGCAACGAGTTTGTGGATAATCTTCTCAAGGATATTGAGACTTTGGGCATCAAGTATGAGACGGTTACCCATACTTCAAATTACTTCCCTGATTTGATGCAAATGGCCGAGAAGCTGATTAATGAAGGTAAAGCATATGTCGATGATACACCTAGAGAGGAGATGCAAAAACAACGAATGGATGGGATTGAGTCAAAGTGTAGAAACCACAGCATAGATGAAAATTTGAATTTGTGGAAGGAGATGATTGCAGGTTCAGAGAGGGGTCTGCAGTGTTGTGTTAGAGGGAAGCTGGATATGCAGGACCCTAATAAATCACTCAGAGATCCAGTTTATTATCGTTGCAATCCAATGCCACATCATAAGATTGGGTCCAAGTACAAGGTATACCCAACTTATGATTTTGCTTGTCCATTTGTTGATTCCATTGAAGGTATAACTCATGCACTTCGATCCAGTGAGTATCATGATCGCAACGCCCAGTACTATCGGATTCAAGATGATATGGGACTGAGAAGAGTGCATCTGTATGAGTTCAGTAGGTTGAACATGGTCTATACACTCCTCAGCAAGCGCAAGCTGTTGTGGTTTGTTCAAAATGAGAAGGTCAACGGATGGGATGATCCTCGATTTCCAACTGTTCAAGGAATTGTGCGTAGAGGTCTCAAAGTTGAAGCATTGATACAGTTCATTCTTGAGCAGGGGGCTTCAAAGAATCTGAATCTTATGGAATGGGACAAACTGTGGACAATTAACAAGAAGATTATTGATCCTGTATGCCCAAGACATACTGCCGTCATTGAAGAGGGACGAGTGTTGTTGACCCTCTCTAATGGCCCTCAGAAGCCATTTGTCCGCATAATACCTAGGCATAAGAAGTATGAAGGTGCTGGAGAAAAGGCAACAACATTCACAAGAAGCGTATGGATAGATCGAGCTGATGCAGAGTTGATATCAGTAGACGAGGAAGTGACATTGATGGATTGGGGGAATGCCATTGTTAAGAAGATTGAGAAAGACCAAGACGGAAATCTTGCGCTCACAGGGGTTTTGCATCTTGAAGGATCTGTGAAAACCACCAAATTGAAGCTTACCTGGCTGCCTGAAATAGATGAACTGGTTAAGCTCTCATTGATGGAGTTTGATTATCTGATAACAAAGAAGAAGCTTGAGGAGGGTGAGGATTTCCTTGATGTGCTTAACCCATATACTGAAAAGGAGACAGCAGCCCTTGGGGATTCCAACATGCGAAATCTGAAGCGTGGAGATGTATTGCAACTTGAGAGGAAAGGGTACTTCAGATGTGATGTTCCCTACCTCAGGCCTTCAAAGCCTATTGTTCTCTTTGCAATCCCCGACGGCAGGCAGCAGGCTGGGTTAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003824 GO:0004812 GO:0004818 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006424 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko00970 ko01100 ko01110 ko01120 map00860 map00970 map01100 map01110 map01120

Pfam Domains

Protein Families

GST_C GST_C_3 tRNA-synt_1c tRNA-synt_1c_C

Protein Analysis

721

Amino Acids

81.54

Weight (kDa)

7.24

Isoelectric Point (pI)

31.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1c	PF00749	213 - 517	7.7e-104	tRNA synthetases class I (E and Q), catalytic domain
tRNA-synt_1c_C	PF03950	520 - 605	5.2e-16	tRNA synthetases class I (E and Q), anti-codon binding domain
tRNA-synt_1c_C2	PF20974	623 - 696	5.1e-14	tRNA synthetases class I (E and Q), anti-codon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26710
fragaria_vesca	FvH4_1g07040 FvH4_3g18420 FvH4_5g29940 FvH4_5g29940 FvH4_6g08750
malus_domestica	MD04G1184100.v1.1 MD12G1197300.v1.1
prunus_persica	Prupe.6G302600_v2.0.a1 Prupe.6G302600_v2.0.a1
pyrus_communis	pycom04g16310
rosa_chinensis	RchiOBHm_Chr1g0323481 RchiOBHm_Chr1g0323531 RchiOBHm_Chr1g0330311 RchiOBHm_Chr1g0330321 RchiOBHm_Chr1g0330421 RchiOBHm_Chr1g0330431 RchiOBHm_Chr3g0459011
rosa_laevigata	RLG00000025126 RLG00000029811 RLG00000030323 RLG00000030332
rosa_multiflora	Rmu_co8493977.1_g000001 Rmu_sc0002634.1_g000044 Rmu_sc0004343.1_g000022 Rmu_sc0007290.1_g000009 Rmu_sc0007290.1_g000010
rosa_roxburghii	Rroxscaffold_4G00319950 Rroxscaffold_4G00319960 Rroxscaffold_6G00420600
rosa_rugosa	Rorug01G0088900 Rorug03G0032500 Rorug05G0414800
rosa_samantha	Rh1AG106700 Rh1AG106800 Rh1CG056600 Rh1CG057900 Rh1CG102700 Rh1CG102800 Rh1DG060600 Rh1DG061700 Rh1DG110600 Rh3BG093600 Rh5DG502200 Rh6BG457000 Rh6BG457100
rosa_wichuraiana	Rw1G008430 Rw1G008550 Rw3G007770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	156, 1022
AccBSI	CCGCTC	1 cut(s)	43
AccI	GTMKAC	2 cut(s)	1167, 1740
AccII	CGCG	2 cut(s)	56, 153
AccIII	TCCGGA	1 cut(s)	619
AclWI	GGATC	6 cut(s)	621, 1100, 1227, 1397, 1544, 1852
AcoI	YGGCCR	4 cut(s)	60, 351, 540, 885
AcsI	RAATTY	2 cut(s)	1003, 1009
AcuI	CTGAAG	2 cut(s)	2057, 2062
AcyI	GRCGYC	2 cut(s)	93, 156
AfaI	GTAC	6 cut(s)	51, 248, 716, 1160, 1265, 2075
AfiI	CCNNNNNNNGG	2 cut(s)	2100, 2142
AjnI	CCWGG	1 cut(s)	1874
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	5 cut(s)	163, 812, 833, 1448, 1994
AlwI	GGATC	6 cut(s)	621, 1100, 1227, 1397, 1544, 1852
AlwNI	CAGNNNCTG	1 cut(s)	386
Aor13HI	TCCGGA	1 cut(s)	619
AoxI	GGCC	7 cut(s)	60, 351, 373, 540, 885, 1615, 2102
ApeKI	GCWGC	4 cut(s)	698, 1879, 2006, 2146
ApoI	RAATTY	2 cut(s)	1003, 1009
AseI	ATTAAT	1 cut(s)	900
AspA2I	CCTAGG	1 cut(s)	1646
AspLEI	GCGC	5 cut(s)	153, 166, 658, 1356, 1819
AspS9I	GGNCC	3 cut(s)	1084, 1152, 1616
AsuC2I	CCSGG	2 cut(s)	73, 539
AsuHPI	GGTGA	3 cut(s)	482, 652, 1970
AsuII	TTCGAA	1 cut(s)	191
AvaII	GGWCC	2 cut(s)	1084, 1152
AvrII	CCTAGG	1 cut(s)	1646
AxyI	CCTNAGG	1 cut(s)	2099
BaeGI	GKGCMC	1 cut(s)	690
BanII	GRGCYC	1 cut(s)	9
BarI	GAAGNNNNNNTAC	2 cut(s)	1446, 1478
Bbv12I	GWGCWC	1 cut(s)	9
BbvCI	CCTCAGC	2 cut(s)	627, 1346
BbvI	GCAGC	4 cut(s)	685, 1866, 2018, 2158
BccI	CCATC	6 cut(s)	343, 390, 956, 1389, 1753, 1909
BceAI	ACGGC	2 cut(s)	1559, 2155
BciT130I	CCWGG	1 cut(s)	1876
BclI	TGATCA	1 cut(s)	334
BcnI	CCSGG	2 cut(s)	73, 539
BcoDI	GTCTC	5 cut(s)	163, 812, 833, 1448, 1994
BfaI	CTAG	3 cut(s)	438, 933, 1647
BfmI	CTRYAG	1 cut(s)	1049
BfoI	RGCGCY	1 cut(s)	167
BfuAI	ACCTGC	2 cut(s)	156, 1022
BisI	GCNGC	9 cut(s)	57, 60, 154, 202, 205, 699, 1880, 2007, 2147
BlnI	CCTAGG	1 cut(s)	1646
BlpI	GCTNAGC	2 cut(s)	517, 723
BlsI	GCNGC	9 cut(s)	58, 61, 155, 203, 206, 700, 1881, 2008, 2148
BmcAI	AGTACT	3 cut(s)	51, 716, 1265
Bme1390I	CCNGG	3 cut(s)	73, 539, 1876
Bme18I	GGWCC	2 cut(s)	1084, 1152
BmgT120I	GGNCC	3 cut(s)	1084, 1152, 1616
BmiI	GGNNCC	4 cut(s)	589, 663, 1086, 1153
BmrFI	CCNGG	3 cut(s)	73, 539, 1876
BmrI	ACTGGG	1 cut(s)	1255
BmsI	GCATC	9 cut(s)	199, 211, 463, 837, 867, 933, 1312, 1711, 1843
BmuI	ACTGGG	1 cut(s)	1255
BpmI	CTGGAG	1 cut(s)	1692
Bpu10I	CCTNAGC	2 cut(s)	627, 1346
Bpu1102I	GCTNAGC	2 cut(s)	517, 723
Bpu14I	TTCGAA	1 cut(s)	191
BpuEI	CTTGAG	5 cut(s)	263, 791, 1496, 1970, 2081
BpuMI	CCSGG	2 cut(s)	73, 539
BsaBI	GATNNNNATC	1 cut(s)	765
BsaHI	GRCGYC	2 cut(s)	93, 156
BsaI	GGTCTC	1 cut(s)	1448
BsaJI	CCNNGG	2 cut(s)	1646, 2011
BsaWI	WCCGGW	3 cut(s)	118, 253, 619
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 552, 582
Bsc4I	CCNNNNNNNGG	2 cut(s)	2100, 2142
Bse1I	ACTGG	5 cut(s)	543, 1109, 1236, 1261, 1902
Bse21I	CCTNAGG	1 cut(s)	2099
Bse8I	GATNNNNATC	1 cut(s)	765
BseAI	TCCGGA	1 cut(s)	619
BseBI	CCWGG	1 cut(s)	1876
BseDI	CCNNGG	2 cut(s)	1646, 2011
BseGI	GGATG	3 cut(s)	967, 1400, 1405
BseJI	GATNNNNATC	1 cut(s)	765
BseLI	CCNNNNNNNGG	2 cut(s)	2100, 2142
BseNI	ACTGG	5 cut(s)	543, 1109, 1236, 1261, 1902
BseRI	GAGGAG	4 cut(s)	105, 953, 1334, 1967
BseSI	GKGCMC	1 cut(s)	690
BseXI	GCAGC	4 cut(s)	685, 1866, 2018, 2158
BseYI	CCCAGC	2 cut(s)	386, 2153
Bsh1236I	CGCG	2 cut(s)	56, 153
Bsh1285I	CGRYCG	1 cut(s)	184
BshFI	GGCC	7 cut(s)	62, 353, 375, 542, 887, 1617, 2104
BsiEI	CGRYCG	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	6 cut(s)	72, 119, 254, 539, 620, 659
BslFI	GGGAC	4 cut(s)	88, 1302, 1529, 1602
BslI	CCNNNNNNNGG	2 cut(s)	2100, 2142
BsmAI	GTCTC	5 cut(s)	163, 812, 833, 1448, 1994
BsmBI	CGTCTC	2 cut(s)	163, 833
BsmFI	GGGAC	4 cut(s)	88, 1302, 1529, 1602
BsmI	GAATGC	1 cut(s)	1777
BsnI	GGCC	7 cut(s)	62, 353, 375, 542, 887, 1617, 2104
Bso31I	GGTCTC	1 cut(s)	1448
Bsp119I	TTCGAA	1 cut(s)	191
Bsp1286I	GDGCHC	2 cut(s)	9, 690
Bsp13I	TCCGGA	1 cut(s)	619
Bsp143I	GATC	9 cut(s)	334, 613, 1105, 1232, 1249, 1402, 1549, 1711, 1844
Bsp1720I	GCTNAGC	2 cut(s)	517, 723
BspANI	GGCC	7 cut(s)	62, 353, 375, 542, 887, 1617, 2104
BspEI	TCCGGA	1 cut(s)	619
BspFNI	CGCG	2 cut(s)	56, 153
BspHI	TCATGA	1 cut(s)	1246
BspLI	GGNNCC	4 cut(s)	589, 663, 1086, 1153
BspMAI	CTGCAG	1 cut(s)	1053
BspMI	ACCTGC	2 cut(s)	156, 1022
BspPI	GGATC	6 cut(s)	621, 1100, 1227, 1397, 1544, 1852
BspT104I	TTCGAA	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	1448
BsrBI	CCGCTC	1 cut(s)	43
BsrI	ACTGG	5 cut(s)	543, 1109, 1236, 1261, 1902
BssECI	CCNNGG	2 cut(s)	1646, 2011
BssMI	GATC	9 cut(s)	334, 613, 1105, 1232, 1249, 1402, 1549, 1711, 1844
BssNAI	GTATAC	1 cut(s)	1168
BssNI	GRCGYC	2 cut(s)	93, 156
BssT1I	CCWWGG	2 cut(s)	1646, 2011
Bst1107I	GTATAC	1 cut(s)	1168
Bst2UI	CCWGG	1 cut(s)	1876
Bst4CI	ACNGT	4 cut(s)	844, 1420, 1467, 1524
Bst6I	CTCTTC	2 cut(s)	1291, 1578
BstACI	GRCGYC	2 cut(s)	93, 156
BstBI	TTCGAA	1 cut(s)	191
BstC8I	GCNNGC	7 cut(s)	69, 289, 293, 1352, 1358, 2144, 2151
BstEII	GGTNACC	1 cut(s)	844
BstENI	CCTNNNNNAGG	1 cut(s)	2098
BstF5I	GGATG	3 cut(s)	967, 1400, 1405
BstFNI	CGCG	2 cut(s)	56, 153
BstH2I	RGCGCY	1 cut(s)	167
BstHHI	GCGC	5 cut(s)	153, 166, 658, 1356, 1819
BstKTI	GATC	9 cut(s)	337, 616, 1108, 1235, 1252, 1405, 1552, 1714, 1847
BstMAI	GTCTC	5 cut(s)	163, 812, 833, 1448, 1994
BstMBI	GATC	9 cut(s)	334, 613, 1105, 1232, 1249, 1402, 1549, 1711, 1844
BstMCI	CGRYCG	1 cut(s)	184
BstMWI	GCNNNNNNNGC	9 cut(s)	13, 68, 101, 148, 359, 513, 1078, 1876, 2110
BstNI	CCWGG	1 cut(s)	1876
BstNSI	RCATGY	1 cut(s)	2029
BstPI	GGTNACC	1 cut(s)	844
BstSCI	CCNGG	3 cut(s)	71, 537, 1874
BstSFI	CTRYAG	1 cut(s)	1049
BstSLI	GKGCMC	1 cut(s)	690
BstUI	CGCG	2 cut(s)	56, 153
BstV1I	GCAGC	4 cut(s)	685, 1866, 2018, 2158
BstX2I	RGATCY	3 cut(s)	613, 1105, 1844
BstYI	RGATCY	3 cut(s)	613, 1105, 1844
BstZ17I	GTATAC	1 cut(s)	1168
Bsu36I	CCTNAGG	1 cut(s)	2099
BsuRI	GGCC	7 cut(s)	62, 353, 375, 542, 887, 1617, 2104
BtgZI	GCGATG	1 cut(s)	222
BtsCI	GGATG	3 cut(s)	967, 1400, 1405
BtsI	GCAGTG	1 cut(s)	1058
BtsIMutI	CAGTG	2 cut(s)	1058, 1243
BveI	ACCTGC	2 cut(s)	156, 1022
Cac8I	GCNNGC	7 cut(s)	69, 289, 293, 1352, 1358, 2144, 2151
CaiI	CAGNNNCTG	1 cut(s)	386
CciI	TCATGA	1 cut(s)	1246
CfoI	GCGC	5 cut(s)	153, 166, 658, 1356, 1819
Cfr13I	GGNCC	3 cut(s)	1084, 1152, 1616
CseI	GACGC	2 cut(s)	101, 145
Csp6I	GTAC	6 cut(s)	50, 247, 715, 1159, 1264, 2074
CviAII	CATG	5 cut(s)	467, 1223, 1247, 1330, 2026
CviQI	GTAC	6 cut(s)	50, 247, 715, 1159, 1264, 2074
DpnI	GATC	9 cut(s)	336, 615, 1107, 1234, 1251, 1404, 1551, 1713, 1846
DpnII	GATC	9 cut(s)	334, 613, 1105, 1232, 1249, 1402, 1549, 1711, 1844
EaeI	YGGCCR	4 cut(s)	60, 351, 540, 885
Eam1104I	CTCTTC	2 cut(s)	1291, 1578
EarI	CTCTTC	2 cut(s)	1291, 1578
EciI	GGCGGA	1 cut(s)	476
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	2 cut(s)	1646, 2011
Eco147I	AGGCCT	2 cut(s)	375, 2104
Eco24I	GRGCYC	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	1448
Eco32I	GATATC	2 cut(s)	358, 1734
Eco47I	GGWCC	2 cut(s)	1084, 1152
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	2 cut(s)	2057, 2062
Eco81I	CCTNAGG	1 cut(s)	2099
Eco91I	GGTNACC	1 cut(s)	844
EcoICRI	GAGCTC	1 cut(s)	7
EcoNI	CCTNNNNNAGG	1 cut(s)	2098
EcoO109I	RGGNCCY	1 cut(s)	1084
EcoO65I	GGTNACC	1 cut(s)	844
EcoRII	CCWGG	1 cut(s)	1874
EcoRV	GATATC	2 cut(s)	358, 1734
EcoT14I	CCWWGG	2 cut(s)	1646, 2011
EcoT22I	ATGCAT	1 cut(s)	478
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	2 cut(s)	1646, 2011
Esp3I	CGTCTC	2 cut(s)	163, 833
FaeI	CATG	5 cut(s)	470, 1226, 1250, 1333, 2029
FaqI	GGGAC	4 cut(s)	88, 1302, 1529, 1602
FatI	CATG	5 cut(s)	466, 1222, 1246, 1329, 2025
FauI	CCCGC	1 cut(s)	34
FauNDI	CATATG	1 cut(s)	916
FbaI	TGATCA	1 cut(s)	334
FblI	GTMKAC	2 cut(s)	1167, 1740
Fnu4HI	GCNGC	9 cut(s)	57, 60, 154, 202, 205, 699, 1880, 2007, 2147
FokI	GGATG	3 cut(s)	974, 1407, 1412
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	9 cut(s)	57, 60, 154, 202, 205, 699, 1880, 2007, 2147
FspBI	CTAG	3 cut(s)	438, 933, 1647
GlaI	GCGC	5 cut(s)	152, 165, 657, 1355, 1818
GluI	GCNGC	9 cut(s)	57, 60, 154, 202, 205, 699, 1880, 2007, 2147
GsaI	CCCAGC	2 cut(s)	390, 2157
GsuI	CTGGAG	1 cut(s)	1692
HaeII	RGCGCY	1 cut(s)	167
HaeIII	GGCC	7 cut(s)	62, 353, 375, 542, 887, 1617, 2104
HapII	CCGG	6 cut(s)	72, 119, 254, 539, 620, 659
HgaI	GACGC	2 cut(s)	101, 145
HhaI	GCGC	5 cut(s)	153, 166, 658, 1356, 1819
Hin1I	GRCGYC	2 cut(s)	93, 156
Hin1II	CATG	5 cut(s)	470, 1226, 1250, 1333, 2029
Hin6I	GCGC	5 cut(s)	151, 164, 656, 1354, 1817
HinP1I	GCGC	5 cut(s)	151, 164, 656, 1354, 1817
HincII	GTYRAC	2 cut(s)	1390, 1602
HindII	GTYRAC	2 cut(s)	1390, 1602
HindIII	AAGCTT	2 cut(s)	1868, 1946
HpaII	CCGG	6 cut(s)	72, 119, 254, 539, 620, 659
HphI	GGTGA	3 cut(s)	482, 652, 1970
Hpy166II	GTNNAC	5 cut(s)	1168, 1390, 1527, 1602, 1741
Hpy188III	TCNNGA	7 cut(s)	218, 280, 620, 1247, 1277, 1475, 1838
Hpy8I	GTNNAC	5 cut(s)	1168, 1390, 1527, 1602, 1741
Hpy99I	CGWCG	3 cut(s)	95, 140, 2141
HpyCH4III	ACNGT	4 cut(s)	844, 1420, 1467, 1524
HpyF10VI	GCNNNNNNNGC	9 cut(s)	13, 68, 101, 148, 359, 513, 1078, 1876, 2110
Hsp92I	GRCGYC	2 cut(s)	93, 156
Hsp92II	CATG	5 cut(s)	470, 1226, 1250, 1333, 2029
HspAI	GCGC	5 cut(s)	151, 164, 656, 1354, 1817
Kpn2I	TCCGGA	1 cut(s)	619
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	9 cut(s)	334, 613, 1105, 1232, 1249, 1402, 1549, 1711, 1844
LmnI	GCTCC	5 cut(s)	4, 87, 256, 383, 661
Lsp1109I	GCAGC	4 cut(s)	685, 1866, 2018, 2158
LweI	GCATC	9 cut(s)	199, 211, 463, 837, 867, 933, 1312, 1711, 1843
MaeI	CTAG	3 cut(s)	438, 933, 1647
MaeIII	GTNAC	3 cut(s)	487, 844, 1750
MalI	GATC	9 cut(s)	336, 615, 1107, 1234, 1251, 1404, 1551, 1713, 1846
MbiI	CCGCTC	1 cut(s)	43
MboI	GATC	9 cut(s)	334, 613, 1105, 1232, 1249, 1402, 1549, 1711, 1844
MflI	RGATCY	3 cut(s)	613, 1105, 1844
MhlI	GDGCHC	2 cut(s)	9, 690
MluCI	AATT	6 cut(s)	859, 1003, 1009, 1428, 1530, 1862
MlyI	GAGTC	1 cut(s)	980
MmeI	TCCRAC	4 cut(s)	159, 613, 1439, 2046
Mph1103I	ATGCAT	1 cut(s)	478
MroI	TCCGGA	1 cut(s)	619
MseI	TTAA	6 cut(s)	900, 1533, 1782, 1902, 1980, 2159
MslI	CAYNNNNRTG	3 cut(s)	300, 471, 1308
MspA1I	CMGCKG	1 cut(s)	727
MspI	CCGG	6 cut(s)	72, 119, 254, 539, 620, 659
MspR9I	CCNGG	3 cut(s)	73, 539, 1876
Mva1269I	GAATGC	1 cut(s)	1777
MvaI	CCWGG	1 cut(s)	1876
MvnI	CGCG	2 cut(s)	56, 153
MwoI	GCNNNNNNNGC	9 cut(s)	13, 68, 101, 148, 359, 513, 1078, 1876, 2110
NciI	CCSGG	2 cut(s)	73, 539
NdeI	CATATG	1 cut(s)	916
NdeII	GATC	9 cut(s)	334, 613, 1105, 1232, 1249, 1402, 1549, 1711, 1844
NlaIII	CATG	5 cut(s)	470, 1226, 1250, 1333, 2029
NlaIV	GGNNCC	4 cut(s)	589, 663, 1086, 1153
NmeAIII	GCCGAG	3 cut(s)	140, 690, 913
NmuCI	GTSAC	1 cut(s)	1750
NsiI	ATGCAT	1 cut(s)	478
NspI	RCATGY	1 cut(s)	2029
NspV	TTCGAA	1 cut(s)	191
PagI	TCATGA	1 cut(s)	1246
PceI	AGGCCT	2 cut(s)	375, 2104
PcsI	WCGNNNNNNNCGW	1 cut(s)	698
PctI	GAATGC	1 cut(s)	1777
PfeI	GAWTC	9 cut(s)	110, 193, 481, 709, 1202, 1273, 1495, 1501, 2018
PkrI	GCNGC	9 cut(s)	58, 61, 155, 203, 206, 700, 1881, 2008, 2148
PleI	GAGTC	1 cut(s)	979
PpsI	GAGTC	1 cut(s)	979
PpuMI	RGGWCCY	1 cut(s)	1084
PshBI	ATTAAT	1 cut(s)	900
Psp124BI	GAGCTC	1 cut(s)	9
Psp5II	RGGWCCY	1 cut(s)	1084
Psp6I	CCWGG	1 cut(s)	1874
PspEI	GGTNACC	1 cut(s)	844
PspFI	CCCAGC	2 cut(s)	386, 2153
PspGI	CCWGG	1 cut(s)	1874
PspN4I	GGNNCC	4 cut(s)	589, 663, 1086, 1153
PspPI	GGNCC	3 cut(s)	1084, 1152, 1616
PspPPI	RGGWCCY	1 cut(s)	1084
PstI	CTGCAG	1 cut(s)	1053
PstNI	CAGNNNCTG	1 cut(s)	386
PsuI	RGATCY	3 cut(s)	613, 1105, 1844
RsaI	GTAC	6 cut(s)	51, 248, 716, 1160, 1265, 2075
RsaNI	GTAC	6 cut(s)	50, 247, 715, 1159, 1264, 2074
RseI	CAYNNNNRTG	3 cut(s)	300, 471, 1308
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	6 cut(s)	900, 1533, 1782, 1902, 1980, 2159
SatI	GCNGC	9 cut(s)	57, 60, 154, 202, 205, 699, 1880, 2007, 2147
Sau3AI	GATC	9 cut(s)	334, 613, 1105, 1232, 1249, 1402, 1549, 1711, 1844
Sau96I	GGNCC	3 cut(s)	1084, 1152, 1616
ScaI	AGTACT	3 cut(s)	51, 716, 1265
SchI	GAGTC	1 cut(s)	980
ScrFI	CCNGG	3 cut(s)	73, 539, 1876
SduI	GDGCHC	2 cut(s)	9, 690
SfaNI	GCATC	9 cut(s)	199, 211, 463, 837, 867, 933, 1312, 1711, 1843
SfcI	CTRYAG	1 cut(s)	1049
SfuI	TTCGAA	1 cut(s)	191
SinI	GGWCC	2 cut(s)	1084, 1152
SmiMI	CAYNNNNRTG	3 cut(s)	300, 471, 1308
SmlI	CTYRAG	6 cut(s)	8, 242, 806, 1475, 1949, 2060
SmoI	CTYRAG	6 cut(s)	8, 242, 806, 1475, 1949, 2060
Sse9I	AATT	6 cut(s)	859, 1003, 1009, 1428, 1530, 1862
SseBI	AGGCCT	2 cut(s)	375, 2104
SspMI	CTAG	3 cut(s)	438, 933, 1647
SstI	GAGCTC	1 cut(s)	9
StuI	AGGCCT	2 cut(s)	375, 2104
StyD4I	CCNGG	3 cut(s)	71, 537, 1874
StyI	CCWWGG	2 cut(s)	1646, 2011
TaaI	ACNGT	4 cut(s)	844, 1420, 1467, 1524
TaqII	GACCGA	1 cut(s)	170
TasI	AATT	6 cut(s)	859, 1003, 1009, 1428, 1530, 1862
TatI	WGTACW	4 cut(s)	49, 714, 1158, 1263
TauI	GCSGC	5 cut(s)	59, 62, 156, 204, 207
TfiI	GAWTC	9 cut(s)	110, 193, 481, 709, 1202, 1273, 1495, 1501, 2018
Tru1I	TTAA	6 cut(s)	900, 1533, 1782, 1902, 1980, 2159
Tru9I	TTAA	6 cut(s)	900, 1533, 1782, 1902, 1980, 2159
TscAI	CASTG	2 cut(s)	1058, 1243
TseFI	GTSAC	1 cut(s)	1750
TseI	GCWGC	4 cut(s)	698, 1879, 2006, 2146
Tsp45I	GTSAC	1 cut(s)	1750
TspDTI	ATGAA	5 cut(s)	918, 1014, 1459, 1677, 1908
TspGWI	ACGGA	2 cut(s)	1407, 1821
TspRI	CASTG	2 cut(s)	1058, 1243
VpaK11BI	GGWCC	2 cut(s)	1084, 1152
VspI	ATTAAT	1 cut(s)	900
XagI	CCTNNNNNAGG	1 cut(s)	2098
XapI	RAATTY	2 cut(s)	1003, 1009
XceI	RCATGY	1 cut(s)	2029
XmaJI	CCTAGG	1 cut(s)	1646
XmiI	GTMKAC	2 cut(s)	1167, 1740
XspI	CTAG	3 cut(s)	438, 933, 1647
ZrmI	AGTACT	3 cut(s)	51, 716, 1265
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.