Belongs to the class-I aminoacyl-tRNA synthetase family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| tRNA-synt_1c | PF00749 | 106 - 350 | 9.9e-81 | tRNA synthetases class I (E and Q), catalytic domain |
| tRNA-synt_1c_C | PF03950 | 389 - 470 | 1.9e-12 | tRNA synthetases class I (E and Q), anti-codon binding domain |
| tRNA-synt_1c_C2 | PF20974 | 490 - 551 | 1.2e-09 | tRNA synthetases class I (E and Q), anti-codon binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 701 |
| AccBSI | CCGCTC | 1 cut(s) | 93 |
| AccI | GTMKAC | 3 cut(s) | 600, 813, 1347 |
| AciI | CCGC | 6 cut(s) | 93, 105, 406, 430, 1000, 1243 |
| AclWI | GGATC | 4 cut(s) | 740, 1045, 1577, 1590 |
| AcoI | YGGCCR | 1 cut(s) | 564 |
| AcsI | RAATTY | 2 cut(s) | 688, 1520 |
| AcuI | CTGAAG | 4 cut(s) | 519, 1209, 1487, 1627 |
| AfaI | GTAC | 2 cut(s) | 806, 911 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1707 |
| AgsI | TTSAA | 9 cut(s) | 857, 923, 973, 1022, 1072, 1098, 1442, 1516, 1674 |
| AjnI | CCWGG | 1 cut(s) | 1475 |
| AluBI | AGCT | 9 cut(s) | 129, 380, 421, 452, 539, 574, 1006, 1325, 1471 |
| AluI | AGCT | 9 cut(s) | 129, 380, 421, 452, 539, 574, 1006, 1325, 1471 |
| Alw26I | GTCTC | 6 cut(s) | 15, 62, 92, 111, 743, 1189 |
| AlwI | GGATC | 4 cut(s) | 740, 1045, 1577, 1590 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 305, 1187 |
| Ama87I | CYCGRG | 2 cut(s) | 273, 1625 |
| AoxI | GGCC | 2 cut(s) | 564, 1222 |
| ApeKI | GCWGC | 3 cut(s) | 1568, 1571, 1711 |
| ApoI | RAATTY | 2 cut(s) | 688, 1520 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 143, 175 |
| AseI | ATTAAT | 1 cut(s) | 1140 |
| AspA2I | CCTAGG | 1 cut(s) | 1253 |
| AspLEI | GCGC | 2 cut(s) | 337, 1417 |
| AspS9I | GGNCC | 2 cut(s) | 1223, 1369 |
| AsuC2I | CCSGG | 1 cut(s) | 202 |
| AsuHPI | GGTGA | 1 cut(s) | 331 |
| AsuII | TTCGAA | 1 cut(s) | 546 |
| AvaI | CYCGRG | 2 cut(s) | 273, 1625 |
| AvaII | GGWCC | 1 cut(s) | 1369 |
| AvrII | CCTAGG | 1 cut(s) | 1253 |
| BaeGI | GKGCMC | 1 cut(s) | 369 |
| BamHI | GGATCC | 1 cut(s) | 1582 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1538, 1570 |
| BbsI | GAAGAC | 1 cut(s) | 260 |
| BbvCI | CCTCAGC | 2 cut(s) | 306, 992 |
| BbvI | GCAGC | 3 cut(s) | 1580, 1583, 1723 |
| BccI | CCATC | 7 cut(s) | 550, 631, 635, 1035, 1360, 1559, 1697 |
| BciT130I | CCWGG | 1 cut(s) | 1477 |
| BciVI | GTATCC | 1 cut(s) | 1631 |
| BcnI | CCSGG | 1 cut(s) | 202 |
| BcoDI | GTCTC | 6 cut(s) | 15, 62, 92, 111, 743, 1189 |
| BfaI | CTAG | 3 cut(s) | 612, 882, 1254 |
| BfmI | CTRYAG | 3 cut(s) | 728, 913, 1179 |
| BfuAI | ACCTGC | 1 cut(s) | 701 |
| BfuI | GTATCC | 1 cut(s) | 1631 |
| BglII | AGATCT | 2 cut(s) | 292, 1506 |
| BisI | GCNGC | 4 cut(s) | 94, 1569, 1572, 1712 |
| BlnI | CCTAGG | 1 cut(s) | 1253 |
| BlpI | GCTNAGC | 2 cut(s) | 214, 402 |
| BlsI | GCNGC | 4 cut(s) | 95, 1570, 1573, 1713 |
| BmcAI | AGTACT | 1 cut(s) | 911 |
| Bme1390I | CCNGG | 2 cut(s) | 202, 1477 |
| Bme18I | GGWCC | 1 cut(s) | 1369 |
| BmeT110I | CYCGRG | 2 cut(s) | 273, 1625 |
| BmgT120I | GGNCC | 2 cut(s) | 1223, 1369 |
| BmiI | GGNNCC | 3 cut(s) | 268, 342, 1584 |
| BmrFI | CCNGG | 2 cut(s) | 202, 1477 |
| BmrI | ACTGGG | 1 cut(s) | 901 |
| BmsI | GCATC | 3 cut(s) | 1318, 1444, 1642 |
| BmuI | ACTGGG | 1 cut(s) | 901 |
| BpiI | GAAGAC | 1 cut(s) | 260 |
| BpmI | CTGGAG | 1 cut(s) | 1299 |
| Bpu10I | CCTNAGC | 2 cut(s) | 306, 992 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 214, 402 |
| Bpu14I | TTCGAA | 1 cut(s) | 546 |
| BpuEI | CTTGAG | 1 cut(s) | 1649 |
| BpuMI | CCSGG | 1 cut(s) | 202 |
| BsaBI | GATNNNNATC | 1 cut(s) | 444 |
| BsaJI | CCNNGG | 4 cut(s) | 274, 583, 1253, 1576 |
| BsaWI | WCCGGW | 1 cut(s) | 1371 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 25, 1602, 1632 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1707 |
| Bse1I | ACTGG | 4 cut(s) | 89, 749, 907, 1503 |
| Bse3DI | GCAATG | 1 cut(s) | 469 |
| Bse8I | GATNNNNATC | 1 cut(s) | 444 |
| BseBI | CCWGG | 1 cut(s) | 1477 |
| BseDI | CCNNGG | 4 cut(s) | 274, 583, 1253, 1576 |
| BseGI | GGATG | 3 cut(s) | 642, 646, 1046 |
| BseJI | GATNNNNATC | 1 cut(s) | 444 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1707 |
| BseMI | GCAATG | 1 cut(s) | 469 |
| BseMII | CTCAG | 8 cut(s) | 228, 297, 416, 754, 929, 1006, 1218, 1710 |
| BseNI | ACTGG | 4 cut(s) | 89, 749, 907, 1503 |
| BseRI | GAGGAG | 5 cut(s) | 123, 291, 533, 692, 980 |
| BseSI | GKGCMC | 1 cut(s) | 369 |
| BseXI | GCAGC | 3 cut(s) | 1580, 1583, 1723 |
| BseYI | CCCAGC | 1 cut(s) | 235 |
| BshFI | GGCC | 2 cut(s) | 566, 1224 |
| BsiHKCI | CYCGRG | 2 cut(s) | 273, 1625 |
| BsiSI | CCGG | 3 cut(s) | 201, 338, 1372 |
| BslFI | GGGAC | 3 cut(s) | 95, 948, 1209 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1707 |
| BsmAI | GTCTC | 6 cut(s) | 15, 62, 92, 111, 743, 1189 |
| BsmBI | CGTCTC | 1 cut(s) | 15 |
| BsmFI | GGGAC | 3 cut(s) | 95, 948, 1209 |
| BsmI | GAATGC | 2 cut(s) | 281, 1384 |
| BsnI | GGCC | 2 cut(s) | 566, 1224 |
| BsoBI | CYCGRG | 2 cut(s) | 273, 1625 |
| Bsp119I | TTCGAA | 1 cut(s) | 546 |
| Bsp1286I | GDGCHC | 1 cut(s) | 369 |
| Bsp143I | GATC | 8 cut(s) | 292, 745, 878, 895, 1050, 1318, 1506, 1582 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 214, 402 |
| BspACI | CCGC | 6 cut(s) | 93, 105, 406, 430, 1000, 1243 |
| BspANI | GGCC | 2 cut(s) | 566, 1224 |
| BspCNI | CTCAG | 8 cut(s) | 227, 298, 415, 753, 930, 1005, 1219, 1711 |
| BspLI | GGNNCC | 3 cut(s) | 268, 342, 1584 |
| BspMAI | CTGCAG | 2 cut(s) | 732, 1183 |
| BspMI | ACCTGC | 1 cut(s) | 701 |
| BspPI | GGATC | 4 cut(s) | 740, 1045, 1577, 1590 |
| BspT104I | TTCGAA | 1 cut(s) | 546 |
| BsrBI | CCGCTC | 1 cut(s) | 93 |
| BsrDI | GCAATG | 1 cut(s) | 469 |
| BsrI | ACTGG | 4 cut(s) | 89, 749, 907, 1503 |
| BssECI | CCNNGG | 4 cut(s) | 274, 583, 1253, 1576 |
| BssMI | GATC | 8 cut(s) | 292, 745, 878, 895, 1050, 1318, 1506, 1582 |
| BssT1I | CCWWGG | 3 cut(s) | 583, 1253, 1576 |
| Bst2UI | CCWGG | 1 cut(s) | 1477 |
| Bst4CI | ACNGT | 3 cut(s) | 9, 1068, 1131 |
| Bst6I | CTCTTC | 1 cut(s) | 1185 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 155 |
| BstBI | TTCGAA | 1 cut(s) | 546 |
| BstC8I | GCNNGC | 4 cut(s) | 198, 998, 1709, 1716 |
| BstDEI | CTNAG | 8 cut(s) | 214, 306, 402, 740, 938, 992, 1227, 1719 |
| BstEII | GGTNACC | 1 cut(s) | 523 |
| BstF5I | GGATG | 3 cut(s) | 642, 646, 1046 |
| BstHHI | GCGC | 2 cut(s) | 337, 1417 |
| BstKTI | GATC | 8 cut(s) | 295, 748, 881, 898, 1053, 1321, 1509, 1585 |
| BstMAI | GTCTC | 6 cut(s) | 15, 62, 92, 111, 743, 1189 |
| BstMBI | GATC | 8 cut(s) | 292, 745, 878, 895, 1050, 1318, 1506, 1582 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 102, 155, 427, 1675 |
| BstNI | CCWGG | 1 cut(s) | 1477 |
| BstNSI | RCATGY | 2 cut(s) | 953, 1594 |
| BstPI | GGTNACC | 1 cut(s) | 523 |
| BstSCI | CCNGG | 2 cut(s) | 200, 1475 |
| BstSFI | CTRYAG | 3 cut(s) | 728, 913, 1179 |
| BstSLI | GKGCMC | 1 cut(s) | 369 |
| BstV1I | GCAGC | 3 cut(s) | 1580, 1583, 1723 |
| BstV2I | GAAGAC | 1 cut(s) | 260 |
| BstX2I | RGATCY | 4 cut(s) | 292, 745, 1506, 1582 |
| BstYI | RGATCY | 4 cut(s) | 292, 745, 1506, 1582 |
| BsuI | GTATCC | 1 cut(s) | 1631 |
| BsuRI | GGCC | 2 cut(s) | 566, 1224 |
| BtsCI | GGATG | 3 cut(s) | 642, 646, 1046 |
| BtsI | GCAGTG | 1 cut(s) | 737 |
| BtsIMutI | CAGTG | 1 cut(s) | 737 |
| BveI | ACCTGC | 1 cut(s) | 701 |
| Cac8I | GCNNGC | 4 cut(s) | 198, 998, 1709, 1716 |
| CaiI | CAGNNNCTG | 2 cut(s) | 305, 1187 |
| CfoI | GCGC | 2 cut(s) | 337, 1417 |
| Cfr13I | GGNCC | 2 cut(s) | 1223, 1369 |
| CseI | GACGC | 1 cut(s) | 147 |
| CsiI | ACCWGGT | 1 cut(s) | 1475 |
| Csp6I | GTAC | 2 cut(s) | 805, 910 |
| CviAII | CATG | 7 cut(s) | 140, 176, 869, 893, 950, 976, 1591 |
| CviQI | GTAC | 2 cut(s) | 805, 910 |
| DdeI | CTNAG | 8 cut(s) | 214, 306, 402, 740, 938, 992, 1227, 1719 |
| DpnI | GATC | 8 cut(s) | 294, 747, 880, 897, 1052, 1320, 1508, 1584 |
| DpnII | GATC | 8 cut(s) | 292, 745, 878, 895, 1050, 1318, 1506, 1582 |
| EaeI | YGGCCR | 1 cut(s) | 564 |
| Eam1104I | CTCTTC | 1 cut(s) | 1185 |
| EarI | CTCTTC | 1 cut(s) | 1185 |
| EciI | GGCGGA | 1 cut(s) | 120 |
| Eco130I | CCWWGG | 3 cut(s) | 583, 1253, 1576 |
| Eco32I | GATATC | 1 cut(s) | 1341 |
| Eco47I | GGWCC | 1 cut(s) | 1369 |
| Eco57I | CTGAAG | 4 cut(s) | 519, 1209, 1487, 1627 |
| Eco88I | CYCGRG | 2 cut(s) | 273, 1625 |
| Eco91I | GGTNACC | 1 cut(s) | 523 |
| EcoO65I | GGTNACC | 1 cut(s) | 523 |
| EcoRII | CCWGG | 1 cut(s) | 1475 |
| EcoRV | GATATC | 1 cut(s) | 1341 |
| EcoT14I | CCWWGG | 3 cut(s) | 583, 1253, 1576 |
| ErhI | CCWWGG | 3 cut(s) | 583, 1253, 1576 |
| Esp3I | CGTCTC | 1 cut(s) | 15 |
| FaeI | CATG | 7 cut(s) | 143, 179, 872, 896, 953, 979, 1594 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 405, 437 |
| FaqI | GGGAC | 3 cut(s) | 95, 948, 1209 |
| FatI | CATG | 7 cut(s) | 139, 175, 868, 892, 949, 975, 1590 |
| FauNDI | CATATG | 2 cut(s) | 595, 1310 |
| FblI | GTMKAC | 3 cut(s) | 600, 813, 1347 |
| Fnu4HI | GCNGC | 4 cut(s) | 94, 1569, 1572, 1712 |
| FokI | GGATG | 3 cut(s) | 649, 653, 1053 |
| Fsp4HI | GCNGC | 4 cut(s) | 94, 1569, 1572, 1712 |
| FspBI | CTAG | 3 cut(s) | 612, 882, 1254 |
| GlaI | GCGC | 2 cut(s) | 336, 1416 |
| GluI | GCNGC | 4 cut(s) | 94, 1569, 1572, 1712 |
| GsaI | CCCAGC | 1 cut(s) | 239 |
| GsuI | CTGGAG | 1 cut(s) | 1299 |
| HaeIII | GGCC | 2 cut(s) | 566, 1224 |
| HapII | CCGG | 3 cut(s) | 201, 338, 1372 |
| HgaI | GACGC | 1 cut(s) | 147 |
| HhaI | GCGC | 2 cut(s) | 337, 1417 |
| Hin1II | CATG | 7 cut(s) | 143, 179, 872, 896, 953, 979, 1594 |
| Hin6I | GCGC | 2 cut(s) | 335, 1415 |
| HinP1I | GCGC | 2 cut(s) | 335, 1415 |
| HincII | GTYRAC | 1 cut(s) | 601 |
| HindII | GTYRAC | 1 cut(s) | 601 |
| HindIII | AAGCTT | 2 cut(s) | 1004, 1469 |
| HpaII | CCGG | 3 cut(s) | 201, 338, 1372 |
| HphI | GGTGA | 1 cut(s) | 331 |
| Hpy166II | GTNNAC | 5 cut(s) | 137, 601, 814, 1134, 1348 |
| Hpy188III | TCNNGA | 3 cut(s) | 923, 1439, 1627 |
| Hpy8I | GTNNAC | 5 cut(s) | 137, 601, 814, 1134, 1348 |
| Hpy99I | CGWCG | 2 cut(s) | 163, 605 |
| HpyAV | CCTTC | 8 cut(s) | 27, 56, 691, 884, 1265, 1279, 1510, 1680 |
| HpyCH4III | ACNGT | 3 cut(s) | 9, 1068, 1131 |
| HpyCH4V | TGCA | 9 cut(s) | 179, 730, 765, 949, 1181, 1331, 1435, 1621, 1694 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 102, 155, 427, 1675 |
| HpyF3I | CTNAG | 8 cut(s) | 214, 306, 402, 740, 938, 992, 1227, 1719 |
| Hsp92II | CATG | 7 cut(s) | 143, 179, 872, 896, 953, 979, 1594 |
| HspAI | GCGC | 2 cut(s) | 335, 1415 |
| Kzo9I | GATC | 8 cut(s) | 292, 745, 878, 895, 1050, 1318, 1506, 1582 |
| LmnI | GCTCC | 5 cut(s) | 36, 278, 1305, 1565, 1660 |
| Lsp1109I | GCAGC | 3 cut(s) | 1580, 1583, 1723 |
| LweI | GCATC | 3 cut(s) | 1318, 1444, 1642 |
| MabI | ACCWGGT | 1 cut(s) | 1475 |
| MaeI | CTAG | 3 cut(s) | 612, 882, 1254 |
| MaeIII | GTNAC | 2 cut(s) | 523, 1357 |
| MalI | GATC | 8 cut(s) | 294, 747, 880, 897, 1052, 1320, 1508, 1584 |
| MbiI | CCGCTC | 1 cut(s) | 93 |
| MboI | GATC | 8 cut(s) | 292, 745, 878, 895, 1050, 1318, 1506, 1582 |
| MboII | GAAGA | 7 cut(s) | 265, 347, 473, 1159, 1202, 1405, 1555 |
| MflI | RGATCY | 4 cut(s) | 292, 745, 1506, 1582 |
| MhlI | GDGCHC | 1 cut(s) | 369 |
| MluCI | AATT | 3 cut(s) | 682, 688, 1520 |
| MlyI | GAGTC | 4 cut(s) | 180, 659, 1204, 1343 |
| MmeI | TCCRAC | 1 cut(s) | 292 |
| MseI | TTAA | 6 cut(s) | 53, 579, 1140, 1389, 1503, 1724 |
| MslI | CAYNNNNRTG | 1 cut(s) | 954 |
| MspA1I | CMGCKG | 1 cut(s) | 406 |
| MspI | CCGG | 3 cut(s) | 201, 338, 1372 |
| MspR9I | CCNGG | 2 cut(s) | 202, 1477 |
| Mva1269I | GAATGC | 2 cut(s) | 281, 1384 |
| MvaI | CCWGG | 1 cut(s) | 1477 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 102, 155, 427, 1675 |
| NciI | CCSGG | 1 cut(s) | 202 |
| NdeI | CATATG | 2 cut(s) | 595, 1310 |
| NdeII | GATC | 8 cut(s) | 292, 745, 878, 895, 1050, 1318, 1506, 1582 |
| NlaIII | CATG | 7 cut(s) | 143, 179, 872, 896, 953, 979, 1594 |
| NlaIV | GGNNCC | 3 cut(s) | 268, 342, 1584 |
| NmeAIII | GCCGAG | 1 cut(s) | 592 |
| NmuCI | GTSAC | 1 cut(s) | 1357 |
| NspI | RCATGY | 2 cut(s) | 953, 1594 |
| NspV | TTCGAA | 1 cut(s) | 546 |
| PaeR7I | CTCGAG | 1 cut(s) | 1625 |
| PctI | GAATGC | 2 cut(s) | 281, 1384 |
| PfeI | GAWTC | 7 cut(s) | 388, 848, 919, 1058, 1076, 1102, 1108 |
| PflFI | GACNNNGTC | 2 cut(s) | 7, 1031 |
| PkrI | GCNGC | 4 cut(s) | 95, 1570, 1573, 1713 |
| PleI | GAGTC | 4 cut(s) | 179, 658, 1204, 1342 |
| PpsI | GAGTC | 4 cut(s) | 179, 658, 1204, 1342 |
| PshBI | ATTAAT | 1 cut(s) | 1140 |
| Psp6I | CCWGG | 1 cut(s) | 1475 |
| PspEI | GGTNACC | 1 cut(s) | 523 |
| PspFI | CCCAGC | 1 cut(s) | 235 |
| PspGI | CCWGG | 1 cut(s) | 1475 |
| PspN4I | GGNNCC | 3 cut(s) | 268, 342, 1584 |
| PspPI | GGNCC | 2 cut(s) | 1223, 1369 |
| PstI | CTGCAG | 2 cut(s) | 732, 1183 |
| PstNI | CAGNNNCTG | 2 cut(s) | 305, 1187 |
| PsuI | RGATCY | 4 cut(s) | 292, 745, 1506, 1582 |
| PsyI | GACNNNGTC | 2 cut(s) | 7, 1031 |
| RsaI | GTAC | 2 cut(s) | 806, 911 |
| RsaNI | GTAC | 2 cut(s) | 805, 910 |
| RseI | CAYNNNNRTG | 1 cut(s) | 954 |
| SalI | GTCGAC | 1 cut(s) | 599 |
| SaqAI | TTAA | 6 cut(s) | 53, 579, 1140, 1389, 1503, 1724 |
| SatI | GCNGC | 4 cut(s) | 94, 1569, 1572, 1712 |
| Sau3AI | GATC | 8 cut(s) | 292, 745, 878, 895, 1050, 1318, 1506, 1582 |
| Sau96I | GGNCC | 2 cut(s) | 1223, 1369 |
| ScaI | AGTACT | 1 cut(s) | 911 |
| SchI | GAGTC | 4 cut(s) | 180, 659, 1204, 1343 |
| ScrFI | CCNGG | 2 cut(s) | 202, 1477 |
| SduI | GDGCHC | 1 cut(s) | 369 |
| SexAI | ACCWGGT | 1 cut(s) | 1475 |
| SfaNI | GCATC | 3 cut(s) | 1318, 1444, 1642 |
| SfcI | CTRYAG | 3 cut(s) | 728, 913, 1179 |
| Sfr274I | CTCGAG | 1 cut(s) | 1625 |
| SfuI | TTCGAA | 1 cut(s) | 546 |
| SinI | GGWCC | 1 cut(s) | 1369 |
| SlaI | CTCGAG | 1 cut(s) | 1625 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 954 |
| SmlI | CTYRAG | 2 cut(s) | 1625, 1664 |
| SmoI | CTYRAG | 2 cut(s) | 1625, 1664 |
| Sse9I | AATT | 3 cut(s) | 682, 688, 1520 |
| SsiI | CCGC | 6 cut(s) | 93, 105, 406, 430, 1000, 1243 |
| SspMI | CTAG | 3 cut(s) | 612, 882, 1254 |
| StyD4I | CCNGG | 2 cut(s) | 200, 1475 |
| StyI | CCWWGG | 3 cut(s) | 583, 1253, 1576 |
| TaaI | ACNGT | 3 cut(s) | 9, 1068, 1131 |
| TasI | AATT | 3 cut(s) | 682, 688, 1520 |
| TatI | WGTACW | 2 cut(s) | 804, 909 |
| TauI | GCSGC | 1 cut(s) | 96 |
| TfiI | GAWTC | 7 cut(s) | 388, 848, 919, 1058, 1076, 1102, 1108 |
| Tru1I | TTAA | 6 cut(s) | 53, 579, 1140, 1389, 1503, 1724 |
| Tru9I | TTAA | 6 cut(s) | 53, 579, 1140, 1389, 1503, 1724 |
| TscAI | CASTG | 1 cut(s) | 737 |
| TseFI | GTSAC | 1 cut(s) | 1357 |
| TseI | GCWGC | 3 cut(s) | 1568, 1571, 1711 |
| Tsp45I | GTSAC | 1 cut(s) | 1357 |
| TspDTI | ATGAA | 5 cut(s) | 75, 638, 719, 1284, 1509 |
| TspGWI | ACGGA | 2 cut(s) | 649, 1419 |
| TspRI | CASTG | 1 cut(s) | 737 |
| Tth111I | GACNNNGTC | 2 cut(s) | 7, 1031 |
| VpaK11BI | GGWCC | 1 cut(s) | 1369 |
| VspI | ATTAAT | 1 cut(s) | 1140 |
| XapI | RAATTY | 2 cut(s) | 688, 1520 |
| XceI | RCATGY | 2 cut(s) | 953, 1594 |
| XhoI | CTCGAG | 1 cut(s) | 1625 |
| XmaJI | CCTAGG | 1 cut(s) | 1253 |
| XmiI | GTMKAC | 3 cut(s) | 600, 813, 1347 |
| XspI | CTAG | 3 cut(s) | 612, 882, 1254 |
| ZrmI | AGTACT | 1 cut(s) | 911 |