Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007290.1

Orthogroup ID

OG0001659

Physical Location & Seq

Genomic Coordinates Forward (+)

50982 .. 51827

Gene Structure 846 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007290.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atggaatgggataaactgtggactcttaataagaagattattgatcctgtatgcccaagacatactgcagtcattgaagagggacgagtgttattgactctctctaatggccctgagaagccatttgtccgcataatacctaggcataagaagtatgaaggtgctggagagaaggcaacaacattcacaaggagcatatggatagatcgagctgatgcagagtcgatatcagtagatgaggaagtgacattgatggattgggggaatgccattgttaagaagattgacaaggaccaagatggaaatcttgcgctcacaggggttttgcatcttgaaggatctgtgaaaaccaccaaactgaagattacctggctgcctgaaatagatgaactggttaacatctcgttgatggagtttgattatctgataacaaagaagaagcttgaggaaggcgaggatttcgttgatgtgcttaacccatgtaccgaaaaggagacagcagcccttggggatcccaacatgcgaaatctgaattgtggagatgtagtgcaacttgagaggaaaggatacttcagatgtgatgttccctacctcaagccttcaaagcctattgttctctttgcaatccccgatggcaggcagcaggctgggttaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003824 GO:0004812 GO:0004818 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006424 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko00970 ko01100 ko01110 ko01120 map00860 map00970 map01100 map01110 map01120

Pfam Domains

Protein Families

GST_C GST_C_3 tRNA-synt_1c tRNA-synt_1c_C

Protein Analysis

219

Amino Acids

24.81

Weight (kDa)

5.4

Isoelectric Point (pI)

24.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26710
fragaria_vesca	FvH4_1g07040 FvH4_3g18420 FvH4_5g29940 FvH4_5g29940 FvH4_6g08750
malus_domestica	MD04G1184100.v1.1 MD12G1197300.v1.1
prunus_persica	Prupe.6G302600_v2.0.a1 Prupe.6G302600_v2.0.a1
pyrus_communis	pycom04g16310
rosa_chinensis	RchiOBHm_Chr1g0323481 RchiOBHm_Chr1g0323531 RchiOBHm_Chr1g0330311 RchiOBHm_Chr1g0330321 RchiOBHm_Chr1g0330421 RchiOBHm_Chr1g0330431 RchiOBHm_Chr3g0459011
rosa_laevigata	RLG00000025126 RLG00000029811 RLG00000030323 RLG00000030332
rosa_multiflora	Rmu_co8493977.1_g000001 Rmu_sc0002634.1_g000044 Rmu_sc0004343.1_g000022 Rmu_sc0007290.1_g000009 Rmu_sc0007290.1_g000010
rosa_roxburghii	Rroxscaffold_4G00319950 Rroxscaffold_4G00319960 Rroxscaffold_6G00420600
rosa_rugosa	Rorug01G0088900 Rorug03G0032500 Rorug05G0414800
rosa_samantha	Rh1AG106700 Rh1AG106800 Rh1CG056600 Rh1CG057900 Rh1CG102700 Rh1CG102800 Rh1DG060600 Rh1DG061700 Rh1DG110600 Rh3BG093600 Rh5DG502200 Rh6BG457000 Rh6BG457100
rosa_wichuraiana	Rw1G008430 Rw1G008550 Rw3G007770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	130
AclWI	GGATC	4 cut(s)	38, 346, 506, 519
AcuI	CTGAAG	2 cut(s)	380, 556
AfaI	GTAC	1 cut(s)	484
AfiI	CCNNNNNNNGG	1 cut(s)	636
AgsI	TTSAA	3 cut(s)	77, 335, 603
AjnI	CCWGG	1 cut(s)	368
AluBI	AGCT	2 cut(s)	212, 442
AluI	AGCT	2 cut(s)	212, 442
Alw26I	GTCTC	1 cut(s)	488
AlwI	GGATC	4 cut(s)	38, 346, 506, 519
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	3 cut(s)	373, 500, 640
AspA2I	CCTAGG	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	313
AspS9I	GGNCC	2 cut(s)	110, 292
AvaII	GGWCC	1 cut(s)	292
AvrII	CCTAGG	1 cut(s)	140
BaeI	ACNNNNGTAYC	2 cut(s)	466, 499
BamHI	GGATCC	1 cut(s)	511
BbvI	GCAGC	3 cut(s)	360, 512, 652
BccI	CCATC	4 cut(s)	247, 293, 403, 626
BciT130I	CCWGG	1 cut(s)	370
BciVI	GTATCC	1 cut(s)	560
BcoDI	GTCTC	1 cut(s)	488
BfaI	CTAG	1 cut(s)	141
BfmI	CTRYAG	1 cut(s)	66
BfuI	GTATCC	1 cut(s)	560
BisI	GCNGC	3 cut(s)	374, 501, 641
BlnI	CCTAGG	1 cut(s)	140
BlsI	GCNGC	3 cut(s)	375, 502, 642
Bme1390I	CCNGG	1 cut(s)	370
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	2 cut(s)	110, 292
BmiI	GGNNCC	1 cut(s)	513
BmrFI	CCNGG	1 cut(s)	370
BmsI	GCATC	2 cut(s)	205, 337
BpmI	CTGGAG	1 cut(s)	186
BpuEI	CTTGAG	3 cut(s)	464, 575, 578
BsaBI	GATNNNNATC	1 cut(s)	303
BsaJI	CCNNGG	2 cut(s)	140, 505
BsaXI	ACNNNNNCTCC	2 cut(s)	531, 561
Bsc4I	CCNNNNNNNGG	1 cut(s)	636
Bse1I	ACTGG	1 cut(s)	396
Bse8I	GATNNNNATC	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	370
BseDI	CCNNGG	2 cut(s)	140, 505
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	636
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	396
BseXI	GCAGC	3 cut(s)	360, 512, 652
BseYI	CCCAGC	1 cut(s)	647
BshFI	GGCC	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	636
BsmAI	GTCTC	1 cut(s)	488
BsmFI	GGGAC	1 cut(s)	96
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	1 cut(s)	111
Bsp143I	GATC	4 cut(s)	43, 205, 338, 511
BspACI	CCGC	1 cut(s)	130
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	513
BspMAI	CTGCAG	1 cut(s)	70
BspPI	GGATC	4 cut(s)	38, 346, 506, 519
BsrI	ACTGG	1 cut(s)	396
BssECI	CCNNGG	2 cut(s)	140, 505
BssMI	GATC	4 cut(s)	43, 205, 338, 511
BssT1I	CCWWGG	2 cut(s)	140, 505
Bst2UI	CCWGG	1 cut(s)	370
Bst4CI	ACNGT	1 cut(s)	18
Bst6I	CTCTTC	1 cut(s)	72
BstC8I	GCNNGC	2 cut(s)	638, 645
BstDEI	CTNAG	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	4 cut(s)	46, 208, 341, 514
BstMAI	GTCTC	1 cut(s)	488
BstMBI	GATC	4 cut(s)	43, 205, 338, 511
BstMWI	GCNNNNNNNGC	1 cut(s)	604
BstNI	CCWGG	1 cut(s)	370
BstNSI	RCATGY	1 cut(s)	523
BstSCI	CCNGG	1 cut(s)	368
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	3 cut(s)	360, 512, 652
BstX2I	RGATCY	2 cut(s)	338, 511
BstYI	RGATCY	2 cut(s)	338, 511
BsuI	GTATCC	1 cut(s)	560
BsuRI	GGCC	1 cut(s)	111
Cac8I	GCNNGC	2 cut(s)	638, 645
CfoI	GCGC	1 cut(s)	313
Cfr13I	GGNCC	2 cut(s)	110, 292
Csp6I	GTAC	1 cut(s)	483
CviAII	CATG	2 cut(s)	480, 520
CviJI	RGCY	9 cut(s)	111, 121, 212, 373, 442, 503, 598, 607, 647
CviKI_1	RGCY	9 cut(s)	111, 121, 212, 373, 442, 503, 598, 607, 647
CviQI	GTAC	1 cut(s)	483
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	4 cut(s)	45, 207, 340, 513
DpnII	GATC	4 cut(s)	43, 205, 338, 511
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
Eco130I	CCWWGG	2 cut(s)	140, 505
Eco32I	GATATC	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	292
Eco57I	CTGAAG	2 cut(s)	380, 556
EcoRII	CCWGG	1 cut(s)	368
EcoRV	GATATC	1 cut(s)	228
EcoT14I	CCWWGG	2 cut(s)	140, 505
ErhI	CCWWGG	2 cut(s)	140, 505
FaeI	CATG	2 cut(s)	483, 523
FaiI	YATR	9 cut(s)	52, 63, 134, 147, 156, 197, 199, 481, 521
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	2 cut(s)	479, 519
FauNDI	CATATG	1 cut(s)	197
Fnu4HI	GCNGC	3 cut(s)	374, 501, 641
Fsp4HI	GCNGC	3 cut(s)	374, 501, 641
FspBI	CTAG	1 cut(s)	141
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	3 cut(s)	374, 501, 641
GsaI	CCCAGC	1 cut(s)	651
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	111
HhaI	GCGC	1 cut(s)	313
Hin1II	CATG	2 cut(s)	483, 523
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	3 cut(s)	22, 97, 221
HpaI	GTTAAC	1 cut(s)	397
Hpy166II	GTNNAC	2 cut(s)	21, 397
Hpy188I	TCNGA	3 cut(s)	426, 531, 575
Hpy188III	TCNNGA	1 cut(s)	332
Hpy8I	GTNNAC	2 cut(s)	21, 397
HpyAV	CCTTC	5 cut(s)	152, 166, 329, 443, 609
HpyCH4III	ACNGT	1 cut(s)	18
HpyCH4V	TGCA	5 cut(s)	68, 218, 328, 550, 623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	604
HpyF3I	CTNAG	1 cut(s)	114
Hsp92II	CATG	2 cut(s)	483, 523
HspAI	GCGC	1 cut(s)	311
KspAI	GTTAAC	1 cut(s)	397
Kzo9I	GATC	4 cut(s)	43, 205, 338, 511
LmnI	GCTCC	1 cut(s)	192
Lsp1109I	GCAGC	3 cut(s)	360, 512, 652
LweI	GCATC	2 cut(s)	205, 337
MaeI	CTAG	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	4 cut(s)	45, 207, 340, 513
MboI	GATC	4 cut(s)	43, 205, 338, 511
MboII	GAAGA	5 cut(s)	46, 89, 292, 373, 448
MflI	RGATCY	2 cut(s)	338, 511
MluCI	AATT	1 cut(s)	532
MlyI	GAGTC	3 cut(s)	16, 91, 230
MnlI	CCTC	6 cut(s)	73, 232, 439, 448, 552, 602
MseI	TTAA	5 cut(s)	27, 276, 396, 474, 653
MspR9I	CCNGG	1 cut(s)	370
Mva1269I	GAATGC	1 cut(s)	271
MvaI	CCWGG	1 cut(s)	370
MwoI	GCNNNNNNNGC	1 cut(s)	604
NdeI	CATATG	1 cut(s)	197
NdeII	GATC	4 cut(s)	43, 205, 338, 511
NlaIII	CATG	2 cut(s)	483, 523
NlaIV	GGNNCC	1 cut(s)	513
NmuCI	GTSAC	1 cut(s)	244
NspI	RCATGY	1 cut(s)	523
PctI	GAATGC	1 cut(s)	271
PkrI	GCNGC	3 cut(s)	375, 502, 642
PleI	GAGTC	3 cut(s)	16, 91, 229
PpsI	GAGTC	3 cut(s)	16, 91, 229
Psp6I	CCWGG	1 cut(s)	368
PspFI	CCCAGC	1 cut(s)	647
PspGI	CCWGG	1 cut(s)	368
PspN4I	GGNNCC	1 cut(s)	513
PspPI	GGNCC	2 cut(s)	110, 292
PstI	CTGCAG	1 cut(s)	70
PsuI	RGATCY	2 cut(s)	338, 511
RsaI	GTAC	1 cut(s)	484
RsaNI	GTAC	1 cut(s)	483
SaqAI	TTAA	5 cut(s)	27, 276, 396, 474, 653
SatI	GCNGC	3 cut(s)	374, 501, 641
Sau3AI	GATC	4 cut(s)	43, 205, 338, 511
Sau96I	GGNCC	2 cut(s)	110, 292
SchI	GAGTC	3 cut(s)	16, 91, 230
ScrFI	CCNGG	1 cut(s)	370
SetI	ASST	6 cut(s)	142, 163, 214, 371, 444, 594
SfaNI	GCATC	2 cut(s)	205, 337
SfcI	CTRYAG	1 cut(s)	66
SinI	GGWCC	1 cut(s)	292
SmlI	CTYRAG	3 cut(s)	443, 554, 593
SmoI	CTYRAG	3 cut(s)	443, 554, 593
Sse9I	AATT	1 cut(s)	532
SsiI	CCGC	1 cut(s)	130
SspMI	CTAG	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	368
StyI	CCWWGG	2 cut(s)	140, 505
TaaI	ACNGT	1 cut(s)	18
TaqI	TCGA	2 cut(s)	208, 224
TasI	AATT	1 cut(s)	532
Tru1I	TTAA	5 cut(s)	27, 276, 396, 474, 653
Tru9I	TTAA	5 cut(s)	27, 276, 396, 474, 653
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	3 cut(s)	373, 500, 640
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	2 cut(s)	171, 402
VpaK11BI	GGWCC	1 cut(s)	292
XceI	RCATGY	1 cut(s)	523
XmaJI	CCTAGG	1 cut(s)	140
XspI	CTAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.