Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001659

Physical Location & Seq

Genomic Coordinates Reverse (-)

20808714 .. 20811949

Gene Structure 3236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g29940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2157 bp

ATGAAGCTGAAGTCGCTCTCTTTCCCGGTGGAAAACCCTCCGCTTTCAGTAATCGCGGCAGCCAAGCTCGCTGGGGTTTCGGTCCCCGCCGACGCCTCTCTCGCTCCCGGCTCTCCTCCCGTTCTTCACTTCTCCGATGGGCGAAAACTGCGCGGCGTTTCGCCGCTTCTTTGTTATTTCGGTCGTATCTCCGATCTCTGCGGCGGCGATGCGTTTCAAGATGCTCAGATTTTTGAGTGGCTTGAGTACGCTCCGGTGCTCTCAGTTGGCTCTGCTTTTGAGAATGCCTGCAAGCATTTGGATGAGTATTTGGGAAGCCGAACCTTCTTGGTTGATCATTCGTTTTCGGTTGCCGATATTGCTATCTGGTCTGGCCTTGCAGGAGCTGGGCTTAGATGGGAGAGTTTGAGGAAGTCGAAGAAGTATCAGAATTTAAGTAGGTGGTATGGTTCGATATTGGAGCAGCATGGTGATGCATTGAACCAAGTAACATCTGCGTATGTTGGAAAGAAAGGCGCGGTGAAATTGAAAGAGAACTCAGCCAGTCAGCAATCGAATGGCGTGAATGGAGACGTGGCGAAAGCGCGAGGAACATCCGAGGTGGATCTTCCCGAGGCTGAGGTTGGAAAGGTGAAGTTGAGGTTTGCGCCGGAGCCCAGTGGTTATCTTCACATTGGGCACACCAAGGCAGCTTTGATGAATAAGTATTTTGCTCAGCGGTATCAAGGTCAGGTGATTCTGCGGTTTGATGATACAAATCCTGCTAAAGAAAGCAATGAGTTTGTGGATAATATTCTCAAGGACATTGAAACTTTGGGCATCGAGTATGAGATGGTTACCTATACTTCAGATTACTTCCCCGAGTTAATGAAAATGGCCGAGAAGCTGATTATCCAAGGTAAAGCATATGTTGATGATACACCAAGAGAGTTGATGCAAAAAGAACGAATGGATGGGATTGAGTCAAAGTGTAGAAACCACAGCAAAGAGGAAAATTTGAAATTGTGGGAGCAGATGATCGCAGGTACAGAGAGGGGTCTGCAGTGTTGTGTTAGGGGGAAGCTAGATATGCAGGACCCTAATAAGTCACTCAGAGATCCAGTTTATTATCGTTGCAATCCAATGCCACATCATAGGATTGGGTCCAAGTACAAGGTCTACCCAACTTATGATTTCGCTTGTCCATTTGTTGATTCCATTGAAGGTATAACTCATGCACTTCGTTCTAGTGAGTATCATGACCGCAACGCCCAGTACTATTGGATTCAAGGGGATATGGAACTGAGAAGAGTGCATCTATATGAGTTCAGTAGGTTGAACATGGTCTATACACTCCTCAGCAAGCGCAAGCTTTTGTGGTTTGTTCAAAATGGGAAGGTCAATGGATGGGATGATCCTCGATTTCCCACTGTTCAGGGAATTGTGCGTAGAGGTCTCAAAGTCGAAGCATTGTTACAGTTCATTCTTGAGATGGGGGCTTCGAAGAATCTGAATCTTATGGAATGGGACAAACTGTGGACAATTAACAAGAAGATTATCGATCCTGTATGCCCAAGACATACTGCTGTCATTGAAGAGGGACGAGTGTTGTTGACACTCATTAATGGGCCCGAGAAGCCATTTGTCCGCATAATACCTAGGCATAAGAAGTGCGAAAGTGCTGGAGAGAAGGCAACAACATTCACAAGGAGCATATGGATAGATCGAGCTGATGCAGAGTTGATTTCAGTTGACGAGGAAGTGACGCTCATGGATTGGGGGAATGCCATTGTTAAGAAGATTGAGAAAGACAAAGATGGAAATCTTGCGCTCACAGGGGTTTTGCATCTTGAAGGATCTGTGAAAACGACCAAATTGAAGCTTACCTGGCTGCCTGAAATAGATGAACTGGTTAAACTCTCATTGATGGAGTTTGATTATCTGATAACAAAGAAGAAGCTTGAGGAAGGCGAGGATTTCCTCGATGCGGTTAACCCATGTACCGAAAAGGAGACAGCAGCCCTTGGGGATGCCAATATGCGAAATCTGAAGTGTGGAGATGTATTGCAACTTGAGAGGAAAGGATACTTCAGATGTGATGTTCCCTACGTCAGGCCTTCAAAGCCTATTGTTCTCTTTGCAATCCCTGACGGCAGGCAGCAGACTGGGTTAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003824 GO:0004812 GO:0004818 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006424 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko00970 ko01100 ko01110 ko01120 map00860 map00970 map01100 map01110 map01120

Pfam Domains

Protein Families

GST_C GST_C_3 tRNA-synt_1c tRNA-synt_1c_C

Protein Analysis

719

Amino Acids

81.22

Weight (kDa)

7.53

Isoelectric Point (pI)

34.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1c	PF00749	210 - 514	1.2e-103	tRNA synthetases class I (E and Q), catalytic domain
tRNA-synt_1c_C	PF03950	517 - 602	1.5e-15	tRNA synthetases class I (E and Q), anti-codon binding domain
tRNA-synt_1c_C2	PF20974	620 - 693	2.2e-13	tRNA synthetases class I (E and Q), anti-codon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26710
fragaria_vesca	FvH4_1g07040 FvH4_3g18420 FvH4_5g29940 FvH4_5g29940 FvH4_6g08750
malus_domestica	MD04G1184100.v1.1 MD12G1197300.v1.1
prunus_persica	Prupe.6G302600_v2.0.a1 Prupe.6G302600_v2.0.a1
pyrus_communis	pycom04g16310
rosa_chinensis	RchiOBHm_Chr1g0323481 RchiOBHm_Chr1g0323531 RchiOBHm_Chr1g0330311 RchiOBHm_Chr1g0330321 RchiOBHm_Chr1g0330421 RchiOBHm_Chr1g0330431 RchiOBHm_Chr3g0459011
rosa_laevigata	RLG00000025126 RLG00000029811 RLG00000030323 RLG00000030332
rosa_multiflora	Rmu_co8493977.1_g000001 Rmu_sc0002634.1_g000044 Rmu_sc0004343.1_g000022 Rmu_sc0007290.1_g000009 Rmu_sc0007290.1_g000010
rosa_roxburghii	Rroxscaffold_4G00319950 Rroxscaffold_4G00319960 Rroxscaffold_6G00420600
rosa_rugosa	Rorug01G0088900 Rorug03G0032500 Rorug05G0414800
rosa_samantha	Rh1AG106700 Rh1AG106800 Rh1CG056600 Rh1CG057900 Rh1CG102700 Rh1CG102800 Rh1DG060600 Rh1DG061700 Rh1DG110600 Rh3BG093600 Rh5DG502200 Rh6BG457000 Rh6BG457100
rosa_wichuraiana	Rw1G008430 Rw1G008550 Rw3G007770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1013
AccI	GTMKAC	1 cut(s)	1158
AccII	CGCG	4 cut(s)	56, 153, 518, 586
AclWI	GGATC	5 cut(s)	612, 1091, 1388, 1535, 1843
AcoI	YGGCCR	1 cut(s)	876
AcsI	RAATTY	2 cut(s)	430, 994
AcuI	CTGAAG	4 cut(s)	29, 831, 2048, 2053
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	5 cut(s)	248, 1027, 1151, 1256, 1981
AfiI	CCNNNNNNNGG	2 cut(s)	1966, 2091
AjiI	CACGTC	1 cut(s)	574
AjnI	CCWGG	1 cut(s)	1865
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	3 cut(s)	564, 1439, 1985
AlwI	GGATC	5 cut(s)	612, 1091, 1388, 1535, 1843
AlwNI	CAGNNNCTG	1 cut(s)	386
Ama87I	CYCGRG	3 cut(s)	611, 860, 1610
AoxI	GGCC	4 cut(s)	373, 876, 1607, 2093
ApaI	GGGCCC	1 cut(s)	1611
ApeKI	GCWGC	6 cut(s)	59, 463, 689, 1870, 1997, 2137
ApoI	RAATTY	2 cut(s)	430, 994
AseI	ATTAAT	1 cut(s)	1602
AspA2I	CCTAGG	1 cut(s)	1637
AspLEI	GCGC	6 cut(s)	153, 518, 586, 649, 1347, 1810
AspS9I	GGNCC	5 cut(s)	82, 1075, 1143, 1607, 1608
AsuC2I	CCSGG	2 cut(s)	26, 108
AsuHPI	GGTGA	4 cut(s)	482, 532, 643, 745
AsuII	TTCGAA	1 cut(s)	1481
AvaI	CYCGRG	3 cut(s)	611, 860, 1610
AvaII	GGWCC	3 cut(s)	82, 1075, 1143
AvrII	CCTAGG	1 cut(s)	1637
BaeGI	GKGCMC	2 cut(s)	681, 1611
BaeI	ACNNNNGTAYC	2 cut(s)	1963, 1996
BanII	GRGCYC	2 cut(s)	657, 1611
BarI	GAAGNNNNNNTAC	2 cut(s)	1437, 1469
Bbv12I	GWGCWC	1 cut(s)	261
BbvCI	CCTCAGC	2 cut(s)	618, 1337
BbvI	GCAGC	6 cut(s)	71, 475, 701, 1857, 2009, 2149
BccI	CCATC	8 cut(s)	131, 390, 826, 947, 1380, 1465, 1790, 1900
BceAI	ACGGC	1 cut(s)	2146
BciT130I	CCWGG	1 cut(s)	1867
BciVI	GTATCC	1 cut(s)	2057
BclI	TGATCA	1 cut(s)	334
BcnI	CCSGG	2 cut(s)	26, 108
BcoDI	GTCTC	3 cut(s)	564, 1439, 1985
BfaI	CTAG	3 cut(s)	1064, 1227, 1638
BfmI	CTRYAG	1 cut(s)	1040
BfuAI	ACCTGC	1 cut(s)	1013
BfuI	GTATCC	1 cut(s)	2057
BlnI	CCTAGG	1 cut(s)	1637
BlpI	GCTNAGC	1 cut(s)	714
BmcAI	AGTACT	1 cut(s)	1256
Bme1390I	CCNGG	3 cut(s)	26, 108, 1867
Bme18I	GGWCC	3 cut(s)	82, 1075, 1143
BmeT110I	CYCGRG	3 cut(s)	611, 860, 1610
BmgBI	CACGTC	1 cut(s)	574
BmgT120I	GGNCC	5 cut(s)	82, 1075, 1143, 1607, 1608
BmiI	GGNNCC	5 cut(s)	84, 654, 1077, 1144, 1609
BmrFI	CCNGG	3 cut(s)	26, 108, 1867
BmrI	ACTGGG	3 cut(s)	651, 1246, 2154
BmuI	ACTGGG	3 cut(s)	651, 1246, 2154
BpmI	CTGGAG	1 cut(s)	1683
Bpu10I	CCTNAGC	2 cut(s)	618, 1337
Bpu1102I	GCTNAGC	1 cut(s)	714
Bpu14I	TTCGAA	1 cut(s)	1481
BpuEI	CTTGAG	5 cut(s)	263, 782, 1487, 1961, 2072
BpuMI	CCSGG	2 cut(s)	26, 108
Bsa29I	ATCGAT	1 cut(s)	1539
BsaBI	GATNNNNATC	2 cut(s)	756, 1800
BsaHI	GRCGYC	1 cut(s)	93
BsaI	GGTCTC	1 cut(s)	1439
BsaJI	CCNNGG	6 cut(s)	597, 612, 684, 895, 1637, 2002
BsaWI	WCCGGW	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	2 cut(s)	1966, 2091
Bse1I	ACTGG	6 cut(s)	543, 657, 1100, 1252, 1893, 2149
Bse3DI	GCAATG	1 cut(s)	781
Bse8I	GATNNNNATC	2 cut(s)	756, 1800
BseBI	CCWGG	1 cut(s)	1867
BseCI	ATCGAT	1 cut(s)	1539
BseDI	CCNNGG	6 cut(s)	597, 612, 684, 895, 1637, 2002
BseGI	GGATG	6 cut(s)	307, 593, 958, 1391, 1396, 2014
BseJI	GATNNNNATC	2 cut(s)	756, 1800
BseLI	CCNNNNNNNGG	2 cut(s)	1966, 2091
BseMI	GCAATG	1 cut(s)	781
BseMII	CTCAG	8 cut(s)	239, 276, 552, 609, 728, 1105, 1274, 1351
BseNI	ACTGG	6 cut(s)	543, 657, 1100, 1252, 1893, 2149
BseRI	GAGGAG	2 cut(s)	105, 1325
BseSI	GKGCMC	2 cut(s)	681, 1611
BseXI	GCAGC	6 cut(s)	71, 475, 701, 1857, 2009, 2149
BseYI	CCCAGC	2 cut(s)	71, 386
Bsh1236I	CGCG	4 cut(s)	56, 153, 518, 586
Bsh1285I	CGRYCG	1 cut(s)	184
BshFI	GGCC	4 cut(s)	375, 878, 1609, 2095
BshVI	ATCGAT	1 cut(s)	1539
BsiEI	CGRYCG	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	261
BsiHKCI	CYCGRG	3 cut(s)	611, 860, 1610
BsiSI	CCGG	4 cut(s)	26, 108, 254, 650
BslFI	GGGAC	3 cut(s)	68, 1520, 1593
BslI	CCNNNNNNNGG	2 cut(s)	1966, 2091
BsmAI	GTCTC	3 cut(s)	564, 1439, 1985
BsmBI	CGTCTC	1 cut(s)	564
BsmFI	GGGAC	3 cut(s)	68, 1520, 1593
BsmI	GAATGC	2 cut(s)	289, 1768
BsnI	GGCC	4 cut(s)	375, 878, 1609, 2095
Bso31I	GGTCTC	1 cut(s)	1439
BsoBI	CYCGRG	3 cut(s)	611, 860, 1610
Bsp119I	TTCGAA	1 cut(s)	1481
Bsp120I	GGGCCC	1 cut(s)	1607
Bsp1286I	GDGCHC	4 cut(s)	261, 657, 681, 1611
Bsp143I	GATC	9 cut(s)	193, 334, 604, 1017, 1096, 1393, 1540, 1702, 1835
Bsp1720I	GCTNAGC	1 cut(s)	714
BspANI	GGCC	4 cut(s)	375, 878, 1609, 2095
BspCNI	CTCAG	8 cut(s)	238, 275, 551, 610, 727, 1104, 1275, 1350
BspDI	ATCGAT	1 cut(s)	1539
BspFNI	CGCG	4 cut(s)	56, 153, 518, 586
BspHI	TCATGA	1 cut(s)	1237
BspLI	GGNNCC	5 cut(s)	84, 654, 1077, 1144, 1609
BspMAI	CTGCAG	1 cut(s)	1044
BspMI	ACCTGC	1 cut(s)	1013
BspPI	GGATC	5 cut(s)	612, 1091, 1388, 1535, 1843
BspT104I	TTCGAA	1 cut(s)	1481
BspTNI	GGTCTC	1 cut(s)	1439
BsrDI	GCAATG	1 cut(s)	781
BsrI	ACTGG	6 cut(s)	543, 657, 1100, 1252, 1893, 2149
BssECI	CCNNGG	6 cut(s)	597, 612, 684, 895, 1637, 2002
BssMI	GATC	9 cut(s)	193, 334, 604, 1017, 1096, 1393, 1540, 1702, 1835
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	4 cut(s)	684, 895, 1637, 2002
Bst2UI	CCWGG	1 cut(s)	1867
Bst4CI	ACNGT	3 cut(s)	1411, 1458, 1515
Bst6I	CTCTTC	2 cut(s)	1282, 1569
BstACI	GRCGYC	1 cut(s)	93
BstBI	TTCGAA	1 cut(s)	1481
BstC8I	GCNNGC	6 cut(s)	69, 289, 293, 1343, 1349, 2135
BstDEI	CTNAG	9 cut(s)	225, 262, 392, 538, 618, 714, 1091, 1283, 1337
BstEII	GGTNACC	1 cut(s)	835
BstENI	CCTNNNNNAGG	1 cut(s)	2089
BstF5I	GGATG	6 cut(s)	307, 593, 958, 1391, 1396, 2014
BstFNI	CGCG	4 cut(s)	56, 153, 518, 586
BstHHI	GCGC	6 cut(s)	153, 518, 586, 649, 1347, 1810
BstKTI	GATC	9 cut(s)	196, 337, 607, 1020, 1099, 1396, 1543, 1705, 1838
BstMAI	GTCTC	3 cut(s)	564, 1439, 1985
BstMBI	GATC	9 cut(s)	193, 334, 604, 1017, 1096, 1393, 1540, 1702, 1835
BstMCI	CGRYCG	1 cut(s)	184
BstMWI	GCNNNNNNNGC	9 cut(s)	13, 68, 101, 148, 359, 1069, 1615, 1867, 2101
BstNI	CCWGG	1 cut(s)	1867
BstPI	GGTNACC	1 cut(s)	835
BstSCI	CCNGG	3 cut(s)	24, 106, 1865
BstSFI	CTRYAG	1 cut(s)	1040
BstSLI	GKGCMC	2 cut(s)	681, 1611
BstUI	CGCG	4 cut(s)	56, 153, 518, 586
BstV1I	GCAGC	6 cut(s)	71, 475, 701, 1857, 2009, 2149
BstX2I	RGATCY	3 cut(s)	604, 1096, 1835
BstYI	RGATCY	3 cut(s)	604, 1096, 1835
Bsu15I	ATCGAT	1 cut(s)	1539
BsuI	GTATCC	1 cut(s)	2057
BsuRI	GGCC	4 cut(s)	375, 878, 1609, 2095
BsuTUI	ATCGAT	1 cut(s)	1539
BtgZI	GCGATG	1 cut(s)	222
BtrI	CACGTC	1 cut(s)	574
BtsCI	GGATG	6 cut(s)	307, 593, 958, 1391, 1396, 2014
BtsI	GCAGTG	1 cut(s)	1049
BtsIMutI	CAGTG	3 cut(s)	664, 1049, 1407
BveI	ACCTGC	1 cut(s)	1013
Cac8I	GCNNGC	6 cut(s)	69, 289, 293, 1343, 1349, 2135
CaiI	CAGNNNCTG	1 cut(s)	386
CciI	TCATGA	1 cut(s)	1237
CfoI	GCGC	6 cut(s)	153, 518, 586, 649, 1347, 1810
Cfr13I	GGNCC	5 cut(s)	82, 1075, 1143, 1607, 1608
ClaI	ATCGAT	1 cut(s)	1539
CseI	GACGC	2 cut(s)	101, 1753
Csp6I	GTAC	5 cut(s)	247, 1026, 1150, 1255, 1980
CviAII	CATG	6 cut(s)	467, 1214, 1238, 1321, 1750, 1977
CviQI	GTAC	5 cut(s)	247, 1026, 1150, 1255, 1980
DdeI	CTNAG	9 cut(s)	225, 262, 392, 538, 618, 714, 1091, 1283, 1337
DpnI	GATC	9 cut(s)	195, 336, 606, 1019, 1098, 1395, 1542, 1704, 1837
DpnII	GATC	9 cut(s)	193, 334, 604, 1017, 1096, 1393, 1540, 1702, 1835
EaeI	YGGCCR	1 cut(s)	876
Eam1104I	CTCTTC	2 cut(s)	1282, 1569
EarI	CTCTTC	2 cut(s)	1282, 1569
Eco130I	CCWWGG	4 cut(s)	684, 895, 1637, 2002
Eco147I	AGGCCT	1 cut(s)	2095
Eco24I	GRGCYC	2 cut(s)	657, 1611
Eco31I	GGTCTC	1 cut(s)	1439
Eco47I	GGWCC	3 cut(s)	82, 1075, 1143
Eco57I	CTGAAG	4 cut(s)	29, 831, 2048, 2053
Eco88I	CYCGRG	3 cut(s)	611, 860, 1610
Eco91I	GGTNACC	1 cut(s)	835
EcoNI	CCTNNNNNAGG	1 cut(s)	2089
EcoO109I	RGGNCCY	1 cut(s)	1075
EcoO65I	GGTNACC	1 cut(s)	835
EcoRII	CCWGG	1 cut(s)	1865
EcoT14I	CCWWGG	4 cut(s)	684, 895, 1637, 2002
EcoT22I	ATGCAT	1 cut(s)	478
EcoT38I	GRGCYC	2 cut(s)	657, 1611
ErhI	CCWWGG	4 cut(s)	684, 895, 1637, 2002
Esp3I	CGTCTC	1 cut(s)	564
FaeI	CATG	6 cut(s)	470, 1217, 1241, 1324, 1753, 1980
FaqI	GGGAC	3 cut(s)	68, 1520, 1593
FatI	CATG	6 cut(s)	466, 1213, 1237, 1320, 1749, 1976
FauI	CCCGC	1 cut(s)	94
FauNDI	CATATG	2 cut(s)	907, 1694
FbaI	TGATCA	1 cut(s)	334
FblI	GTMKAC	1 cut(s)	1158
FokI	GGATG	6 cut(s)	314, 580, 965, 1398, 1403, 2021
FriOI	GRGCYC	2 cut(s)	657, 1611
FspBI	CTAG	3 cut(s)	1064, 1227, 1638
GlaI	GCGC	6 cut(s)	152, 517, 585, 648, 1346, 1809
GsaI	CCCAGC	2 cut(s)	75, 390
GsuI	CTGGAG	1 cut(s)	1683
HaeIII	GGCC	4 cut(s)	375, 878, 1609, 2095
HapII	CCGG	4 cut(s)	26, 108, 254, 650
HgaI	GACGC	2 cut(s)	101, 1753
HhaI	GCGC	6 cut(s)	153, 518, 586, 649, 1347, 1810
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	6 cut(s)	470, 1217, 1241, 1324, 1753, 1980
Hin6I	GCGC	6 cut(s)	151, 516, 584, 647, 1345, 1808
HinP1I	GCGC	6 cut(s)	151, 516, 584, 647, 1345, 1808
HincII	GTYRAC	3 cut(s)	1593, 1732, 1972
HindII	GTYRAC	3 cut(s)	1593, 1732, 1972
HindIII	AAGCTT	3 cut(s)	1349, 1859, 1937
HinfI	GANTC	6 cut(s)	736, 962, 1193, 1264, 1486, 1492
HpaI	GTTAAC	1 cut(s)	1972
HpaII	CCGG	4 cut(s)	26, 108, 254, 650
HphI	GGTGA	4 cut(s)	482, 532, 643, 745
Hpy166II	GTNNAC	5 cut(s)	1159, 1518, 1593, 1732, 1972
Hpy188III	TCNNGA	5 cut(s)	218, 611, 1238, 1466, 1829
Hpy8I	GTNNAC	5 cut(s)	1159, 1518, 1593, 1732, 1972
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	7 cut(s)	334, 1196, 1369, 1663, 1826, 1940, 2106
HpyCH4III	ACNGT	3 cut(s)	1411, 1458, 1515
HpyCH4IV	ACGT	2 cut(s)	573, 2088
HpyF10VI	GCNNNNNNNGC	9 cut(s)	13, 68, 101, 148, 359, 1069, 1615, 1867, 2101
HpyF3I	CTNAG	9 cut(s)	225, 262, 392, 538, 618, 714, 1091, 1283, 1337
HpySE526I	ACGT	2 cut(s)	573, 2088
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	6 cut(s)	470, 1217, 1241, 1324, 1753, 1980
HspAI	GCGC	6 cut(s)	151, 516, 584, 647, 1345, 1808
Ksp22I	TGATCA	1 cut(s)	334
KspAI	GTTAAC	1 cut(s)	1972
Kzo9I	GATC	9 cut(s)	193, 334, 604, 1017, 1096, 1393, 1540, 1702, 1835
LmnI	GCTCC	7 cut(s)	109, 256, 383, 460, 652, 1009, 1689
Lsp1109I	GCAGC	6 cut(s)	71, 475, 701, 1857, 2009, 2149
MaeI	CTAG	3 cut(s)	1064, 1227, 1638
MaeII	ACGT	2 cut(s)	573, 2088
MaeIII	GTNAC	5 cut(s)	487, 835, 1086, 1452, 1741
MalI	GATC	9 cut(s)	195, 336, 606, 1019, 1098, 1395, 1542, 1704, 1837
MboI	GATC	9 cut(s)	193, 334, 604, 1017, 1096, 1393, 1540, 1702, 1835
MflI	RGATCY	3 cut(s)	604, 1096, 1835
MhlI	GDGCHC	4 cut(s)	261, 657, 681, 1611
MluCI	AATT	7 cut(s)	430, 524, 994, 1001, 1419, 1521, 1853
MlyI	GAGTC	1 cut(s)	971
MmeI	TCCRAC	2 cut(s)	484, 604
Mph1103I	ATGCAT	1 cut(s)	478
MseI	TTAA	8 cut(s)	434, 866, 1524, 1602, 1773, 1893, 1971, 2150
MslI	CAYNNNNRTG	3 cut(s)	300, 471, 1299
MspA1I	CMGCKG	1 cut(s)	718
MspI	CCGG	4 cut(s)	26, 108, 254, 650
MspR9I	CCNGG	3 cut(s)	26, 108, 1867
Mva1269I	GAATGC	2 cut(s)	289, 1768
MvaI	CCWGG	1 cut(s)	1867
MvnI	CGCG	4 cut(s)	56, 153, 518, 586
MwoI	GCNNNNNNNGC	9 cut(s)	13, 68, 101, 148, 359, 1069, 1615, 1867, 2101
NciI	CCSGG	2 cut(s)	26, 108
NdeI	CATATG	2 cut(s)	907, 1694
NdeII	GATC	9 cut(s)	193, 334, 604, 1017, 1096, 1393, 1540, 1702, 1835
NlaIII	CATG	6 cut(s)	470, 1217, 1241, 1324, 1753, 1980
NlaIV	GGNNCC	5 cut(s)	84, 654, 1077, 1144, 1609
NmeAIII	GCCGAG	1 cut(s)	904
NmuCI	GTSAC	2 cut(s)	1086, 1741
NsiI	ATGCAT	1 cut(s)	478
NspV	TTCGAA	1 cut(s)	1481
PagI	TCATGA	1 cut(s)	1237
PceI	AGGCCT	1 cut(s)	2095
PctI	GAATGC	2 cut(s)	289, 1768
PfeI	GAWTC	5 cut(s)	736, 1193, 1264, 1486, 1492
PleI	GAGTC	1 cut(s)	970
PpsI	GAGTC	1 cut(s)	970
PpuMI	RGGWCCY	1 cut(s)	1075
PshBI	ATTAAT	1 cut(s)	1602
Psp5II	RGGWCCY	1 cut(s)	1075
Psp6I	CCWGG	1 cut(s)	1865
PspEI	GGTNACC	1 cut(s)	835
PspFI	CCCAGC	2 cut(s)	71, 386
PspGI	CCWGG	1 cut(s)	1865
PspN4I	GGNNCC	5 cut(s)	84, 654, 1077, 1144, 1609
PspOMI	GGGCCC	1 cut(s)	1607
PspPI	GGNCC	5 cut(s)	82, 1075, 1143, 1607, 1608
PspPPI	RGGWCCY	1 cut(s)	1075
PstI	CTGCAG	1 cut(s)	1044
PstNI	CAGNNNCTG	1 cut(s)	386
PsuI	RGATCY	3 cut(s)	604, 1096, 1835
RsaI	GTAC	5 cut(s)	248, 1027, 1151, 1256, 1981
RsaNI	GTAC	5 cut(s)	247, 1026, 1150, 1255, 1980
RseI	CAYNNNNRTG	3 cut(s)	300, 471, 1299
SaqAI	TTAA	8 cut(s)	434, 866, 1524, 1602, 1773, 1893, 1971, 2150
Sau3AI	GATC	9 cut(s)	193, 334, 604, 1017, 1096, 1393, 1540, 1702, 1835
Sau96I	GGNCC	5 cut(s)	82, 1075, 1143, 1607, 1608
ScaI	AGTACT	1 cut(s)	1256
SchI	GAGTC	1 cut(s)	971
ScrFI	CCNGG	3 cut(s)	26, 108, 1867
SduI	GDGCHC	4 cut(s)	261, 657, 681, 1611
SfcI	CTRYAG	1 cut(s)	1040
SfuI	TTCGAA	1 cut(s)	1481
SinI	GGWCC	3 cut(s)	82, 1075, 1143
SmiMI	CAYNNNNRTG	3 cut(s)	300, 471, 1299
SmlI	CTYRAG	5 cut(s)	242, 797, 1466, 1940, 2051
SmoI	CTYRAG	5 cut(s)	242, 797, 1466, 1940, 2051
Sse9I	AATT	7 cut(s)	430, 524, 994, 1001, 1419, 1521, 1853
SseBI	AGGCCT	1 cut(s)	2095
SspI	AATATT	1 cut(s)	793
SspMI	CTAG	3 cut(s)	1064, 1227, 1638
StuI	AGGCCT	1 cut(s)	2095
StyD4I	CCNGG	3 cut(s)	24, 106, 1865
StyI	CCWWGG	4 cut(s)	684, 895, 1637, 2002
TaaI	ACNGT	3 cut(s)	1411, 1458, 1515
TaiI	ACGT	2 cut(s)	576, 2091
TaqII	GACCGA	2 cut(s)	70, 170
TasI	AATT	7 cut(s)	430, 524, 994, 1001, 1419, 1521, 1853
TatI	WGTACW	2 cut(s)	1149, 1254
TauI	GCSGC	5 cut(s)	59, 156, 166, 204, 207
TfiI	GAWTC	5 cut(s)	736, 1193, 1264, 1486, 1492
Tru1I	TTAA	8 cut(s)	434, 866, 1524, 1602, 1773, 1893, 1971, 2150
Tru9I	TTAA	8 cut(s)	434, 866, 1524, 1602, 1773, 1893, 1971, 2150
TscAI	CASTG	3 cut(s)	664, 1049, 1414
TseFI	GTSAC	2 cut(s)	1086, 1741
TseI	GCWGC	6 cut(s)	59, 463, 689, 1870, 1997, 2137
Tsp45I	GTSAC	2 cut(s)	1086, 1741
TspDTI	ATGAA	5 cut(s)	17, 713, 884, 1450, 1899
TspRI	CASTG	3 cut(s)	664, 1049, 1414
VpaK11BI	GGWCC	3 cut(s)	82, 1075, 1143
VspI	ATTAAT	1 cut(s)	1602
XagI	CCTNNNNNAGG	1 cut(s)	2089
XapI	RAATTY	2 cut(s)	430, 994
XmaJI	CCTAGG	1 cut(s)	1637
XmiI	GTMKAC	1 cut(s)	1158
XspI	CTAG	3 cut(s)	1064, 1227, 1638
ZrmI	AGTACT	1 cut(s)	1256
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.