Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001659

Physical Location & Seq

Genomic Coordinates Reverse (-)

21336051 .. 21337031

Gene Structure 981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG102800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGATATGACCGAGAAGCTGATTAACCAAGGTAAAGCATATGTCGACGATACACCTAGAGAAGAGATGCAAAAGCAACGGATGGATGAGATTGAGTCAAAGAGTAGAAACCACAGCAAAGAGGAAAATTTGGAACTGTGGAAGGAGAAGAAAGCAGGTTCAGAGAGGGGTCTGCATTGTTGTGTTAGAGGGAAGCTGGACATGCAGGACCCTAATAAATCACTCAGAGATCCAGTTTATTATCGTTGCAATCCAATGCCACATCATAGGAAAGAGATGGGGTCCAATTACAAGGTCTACCCAACTTATGATTTTGCTTGTCCATTTGTTGATTCCATTCAAGGTATAACTCATTCCCTTCGATCTAGTGAATACCATGATCGCAACGCCCAGTACTATAGGATTCAAGAGGATATGGGACTGAGAAAAGTCCATGTGTATGAGTTCAGTAGGTTGAACATGGTCTACACACTCCTCAGCAAGCGGAAGCTTTTGTGGTTTGTTCAAAATGACAAGGTCAATGGATGGGATGATCCTCGATTCCCAACTGTTCAAGGAATCGTGCGTAGAGGTCTCAAAGTTGAAGCATTGATACAGTTCATTCTTGAGCAGGGGGCTTCAAAGAATCTGAATCTTATGGAATGGGATAAACTGTGGACTCTTAATAAGAAGATTATTGATCCTATATGCCCAAGACATACTGCAGTCATTGAAGAGGGACGAGTGTTATTGACTCTCTCTAATGGCCCTGAGAAGCCATTTGTCCGCATAATACCTAGGCATAAGAAGTATGAAGGTGCTGGAGAGAAGGCAACAACATTCACAAGGAGCATATGGATAGATCGAGCTGATGCAGAGTCGATATCAGTAGATGAGGAAGTGACATTGATGGATTGGGGGAATGCCGTTGTTAAGAAGATTGACAAAGACCAAGATGGAAATCTTGCGCTCAAGGGGTTTTGCATCTTGAAGGACCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003824 GO:0004812 GO:0004818 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006424 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko00970 ko01100 ko01110 ko01120 map00860 map00970 map01100 map01110 map01120

Pfam Domains

Protein Families

GST_C GST_C_3 tRNA-synt_1c tRNA-synt_1c_C

Protein Analysis

326

Amino Acids

38.1

Weight (kDa)

8.56

Isoelectric Point (pI)

31.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1c	PF00749	2 - 227	8.9e-63	tRNA synthetases class I (E and Q), catalytic domain
tRNA-synt_1c_C	PF03950	230 - 315	1.8e-16	tRNA synthetases class I (E and Q), anti-codon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26710
fragaria_vesca	FvH4_1g07040 FvH4_3g18420 FvH4_5g29940 FvH4_5g29940 FvH4_6g08750
malus_domestica	MD04G1184100.v1.1 MD12G1197300.v1.1
prunus_persica	Prupe.6G302600_v2.0.a1 Prupe.6G302600_v2.0.a1
pyrus_communis	pycom04g16310
rosa_chinensis	RchiOBHm_Chr1g0323481 RchiOBHm_Chr1g0323531 RchiOBHm_Chr1g0330311 RchiOBHm_Chr1g0330321 RchiOBHm_Chr1g0330421 RchiOBHm_Chr1g0330431 RchiOBHm_Chr3g0459011
rosa_laevigata	RLG00000025126 RLG00000029811 RLG00000030323 RLG00000030332
rosa_multiflora	Rmu_co8493977.1_g000001 Rmu_sc0002634.1_g000044 Rmu_sc0004343.1_g000022 Rmu_sc0007290.1_g000009 Rmu_sc0007290.1_g000010
rosa_roxburghii	Rroxscaffold_4G00319950 Rroxscaffold_4G00319960 Rroxscaffold_6G00420600
rosa_rugosa	Rorug01G0088900 Rorug03G0032500 Rorug05G0414800
rosa_samantha	Rh1AG106700 Rh1AG106800 Rh1CG056600 Rh1CG057900 Rh1CG102700 Rh1CG102800 Rh1DG060600 Rh1DG061700 Rh1DG110600 Rh3BG093600 Rh5DG502200 Rh6BG457000 Rh6BG457100
rosa_wichuraiana	Rw1G008430 Rw1G008550 Rw3G007770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	146
AccI	GTMKAC	3 cut(s)	45, 297, 465
AciI	CCGC	2 cut(s)	484, 766
AclWI	GGATC	3 cut(s)	224, 527, 674
AcsI	RAATTY	1 cut(s)	127
AfaI	GTAC	1 cut(s)	395
AgsI	TTSAA	9 cut(s)	341, 407, 457, 506, 554, 584, 621, 713, 970
AluBI	AGCT	4 cut(s)	19, 196, 490, 848
AluI	AGCT	4 cut(s)	19, 196, 490, 848
Alw26I	GTCTC	1 cut(s)	578
AlwI	GGATC	3 cut(s)	224, 527, 674
AoxI	GGCC	1 cut(s)	745
ApoI	RAATTY	1 cut(s)	127
AspA2I	CCTAGG	1 cut(s)	776
AspLEI	GCGC	1 cut(s)	949
AspS9I	GGNCC	4 cut(s)	208, 282, 746, 973
AvaII	GGWCC	3 cut(s)	208, 282, 973
AvrII	CCTAGG	1 cut(s)	776
BarI	GAAGNNNNNNTAC	2 cut(s)	576, 608
BbvCI	CCTCAGC	1 cut(s)	476
BccI	CCATC	5 cut(s)	76, 271, 519, 883, 929
BceAI	ACGGC	1 cut(s)	890
BcoDI	GTCTC	1 cut(s)	578
BfaI	CTAG	3 cut(s)	57, 366, 777
BfmI	CTRYAG	2 cut(s)	397, 702
BfuAI	ACCTGC	1 cut(s)	146
BlnI	CCTAGG	1 cut(s)	776
BmcAI	AGTACT	1 cut(s)	395
Bme18I	GGWCC	3 cut(s)	208, 282, 973
BmgT120I	GGNCC	4 cut(s)	208, 282, 746, 973
BmiI	GGNNCC	2 cut(s)	210, 283
BmrI	ACTGGG	1 cut(s)	385
BmsI	GCATC	3 cut(s)	57, 841, 972
BmuI	ACTGGG	1 cut(s)	385
BpmI	CTGGAG	1 cut(s)	822
Bpu10I	CCTNAGC	1 cut(s)	476
BpuEI	CTTGAG	2 cut(s)	626, 935
BsaBI	GATNNNNATC	1 cut(s)	939
BsaI	GGTCTC	1 cut(s)	578
BsaJI	CCNNGG	2 cut(s)	28, 776
Bse1I	ACTGG	2 cut(s)	233, 391
Bse8I	GATNNNNATC	1 cut(s)	939
BseDI	CCNNGG	2 cut(s)	28, 776
BseGI	GGATG	4 cut(s)	87, 91, 530, 535
BseJI	GATNNNNATC	1 cut(s)	939
BseMII	CTCAG	4 cut(s)	238, 413, 490, 741
BseNI	ACTGG	2 cut(s)	233, 391
BseRI	GAGGAG	1 cut(s)	464
BshFI	GGCC	1 cut(s)	747
BslFI	GGGAC	2 cut(s)	432, 732
BsmAI	GTCTC	1 cut(s)	578
BsmFI	GGGAC	2 cut(s)	432, 732
BsmI	GAATGC	1 cut(s)	907
BsnI	GGCC	1 cut(s)	747
Bso31I	GGTCTC	1 cut(s)	578
Bsp143I	GATC	6 cut(s)	229, 362, 379, 532, 679, 841
BspACI	CCGC	2 cut(s)	484, 766
BspANI	GGCC	1 cut(s)	747
BspCNI	CTCAG	4 cut(s)	237, 414, 489, 742
BspLI	GGNNCC	2 cut(s)	210, 283
BspMAI	CTGCAG	1 cut(s)	706
BspMI	ACCTGC	1 cut(s)	146
BspPI	GGATC	3 cut(s)	224, 527, 674
BspTNI	GGTCTC	1 cut(s)	578
BsrI	ACTGG	2 cut(s)	233, 391
BssECI	CCNNGG	2 cut(s)	28, 776
BssMI	GATC	6 cut(s)	229, 362, 379, 532, 679, 841
BssT1I	CCWWGG	2 cut(s)	28, 776
Bst4CI	ACNGT	4 cut(s)	138, 550, 597, 654
Bst6I	CTCTTC	2 cut(s)	57, 708
BstC8I	GCNNGC	1 cut(s)	482
BstDEI	CTNAG	4 cut(s)	224, 422, 476, 750
BstF5I	GGATG	4 cut(s)	87, 91, 530, 535
BstHHI	GCGC	1 cut(s)	949
BstKTI	GATC	6 cut(s)	232, 365, 382, 535, 682, 844
BstMAI	GTCTC	1 cut(s)	578
BstMBI	GATC	6 cut(s)	229, 362, 379, 532, 679, 841
BstMWI	GCNNNNNNNGC	1 cut(s)	202
BstNSI	RCATGY	1 cut(s)	205
BstSFI	CTRYAG	2 cut(s)	397, 702
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuRI	GGCC	1 cut(s)	747
BtsCI	GGATG	4 cut(s)	87, 91, 530, 535
BveI	ACCTGC	1 cut(s)	146
Cac8I	GCNNGC	1 cut(s)	482
CfoI	GCGC	1 cut(s)	949
Cfr13I	GGNCC	4 cut(s)	208, 282, 746, 973
Csp6I	GTAC	1 cut(s)	394
CviAII	CATG	4 cut(s)	202, 377, 434, 460
CviJI	RGCY	7 cut(s)	19, 196, 490, 617, 747, 757, 848
CviKI_1	RGCY	7 cut(s)	19, 196, 490, 617, 747, 757, 848
CviQI	GTAC	1 cut(s)	394
DdeI	CTNAG	4 cut(s)	224, 422, 476, 750
DpnI	GATC	6 cut(s)	231, 364, 381, 534, 681, 843
DpnII	GATC	6 cut(s)	229, 362, 379, 532, 679, 841
Eam1104I	CTCTTC	2 cut(s)	57, 708
EarI	CTCTTC	2 cut(s)	57, 708
Eco130I	CCWWGG	2 cut(s)	28, 776
Eco31I	GGTCTC	1 cut(s)	578
Eco32I	GATATC	1 cut(s)	864
Eco47I	GGWCC	3 cut(s)	208, 282, 973
EcoO109I	RGGNCCY	2 cut(s)	208, 973
EcoRV	GATATC	1 cut(s)	864
EcoT14I	CCWWGG	2 cut(s)	28, 776
ErhI	CCWWGG	2 cut(s)	28, 776
FaeI	CATG	4 cut(s)	205, 380, 437, 463
FaqI	GGGAC	2 cut(s)	432, 732
FatI	CATG	4 cut(s)	201, 376, 433, 459
FauNDI	CATATG	2 cut(s)	40, 833
FblI	GTMKAC	3 cut(s)	45, 297, 465
FokI	GGATG	4 cut(s)	94, 98, 537, 542
FspBI	CTAG	3 cut(s)	57, 366, 777
GlaI	GCGC	1 cut(s)	948
GsuI	CTGGAG	1 cut(s)	822
HaeIII	GGCC	1 cut(s)	747
HhaI	GCGC	1 cut(s)	949
Hin1II	CATG	4 cut(s)	205, 380, 437, 463
Hin6I	GCGC	1 cut(s)	947
HinP1I	GCGC	1 cut(s)	947
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HindIII	AAGCTT	1 cut(s)	488
Hpy166II	GTNNAC	4 cut(s)	46, 298, 466, 657
Hpy188I	TCNGA	3 cut(s)	163, 227, 630
Hpy188III	TCNNGA	3 cut(s)	407, 605, 967
Hpy8I	GTNNAC	4 cut(s)	46, 298, 466, 657
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	5 cut(s)	136, 368, 788, 802, 964
HpyCH4III	ACNGT	4 cut(s)	138, 550, 597, 654
HpyCH4V	TGCA	7 cut(s)	70, 175, 205, 249, 704, 854, 963
HpyF10VI	GCNNNNNNNGC	1 cut(s)	202
HpyF3I	CTNAG	4 cut(s)	224, 422, 476, 750
Hsp92II	CATG	4 cut(s)	205, 380, 437, 463
HspAI	GCGC	1 cut(s)	947
Kzo9I	GATC	6 cut(s)	229, 362, 379, 532, 679, 841
LmnI	GCTCC	1 cut(s)	828
LpnPI	CCDG	8 cut(s)	141, 182, 191, 246, 404, 596, 762, 786
LweI	GCATC	3 cut(s)	57, 841, 972
MaeI	CTAG	3 cut(s)	57, 366, 777
MaeIII	GTNAC	1 cut(s)	880
MalI	GATC	6 cut(s)	231, 364, 381, 534, 681, 843
MboI	GATC	6 cut(s)	229, 362, 379, 532, 679, 841
MboII	GAAGA	5 cut(s)	74, 160, 682, 725, 928
MflI	RGATCY	1 cut(s)	229
MluCI	AATT	2 cut(s)	127, 286
MlyI	GAGTC	4 cut(s)	104, 652, 727, 866
MnlI	CCTC	9 cut(s)	115, 159, 182, 403, 485, 546, 563, 709, 868
MseI	TTAA	3 cut(s)	24, 663, 912
MslI	CAYNNNNRTG	2 cut(s)	180, 438
Mva1269I	GAATGC	1 cut(s)	907
MwoI	GCNNNNNNNGC	1 cut(s)	202
NdeI	CATATG	2 cut(s)	40, 833
NdeII	GATC	6 cut(s)	229, 362, 379, 532, 679, 841
NlaIII	CATG	4 cut(s)	205, 380, 437, 463
NlaIV	GGNNCC	2 cut(s)	210, 283
NmuCI	GTSAC	1 cut(s)	880
NspI	RCATGY	1 cut(s)	205
PctI	GAATGC	1 cut(s)	907
PfeI	GAWTC	6 cut(s)	332, 403, 540, 558, 625, 631
PflFI	GACNNNGTC	1 cut(s)	515
PleI	GAGTC	4 cut(s)	103, 652, 727, 865
PpsI	GAGTC	4 cut(s)	103, 652, 727, 865
PpuMI	RGGWCCY	2 cut(s)	208, 973
Psp5II	RGGWCCY	2 cut(s)	208, 973
PspN4I	GGNNCC	2 cut(s)	210, 283
PspPI	GGNCC	4 cut(s)	208, 282, 746, 973
PspPPI	RGGWCCY	2 cut(s)	208, 973
PsrI	GAACNNNNNNTAC	2 cut(s)	449, 481
PstI	CTGCAG	1 cut(s)	706
PsuI	RGATCY	1 cut(s)	229
PsyI	GACNNNGTC	1 cut(s)	515
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
RseI	CAYNNNNRTG	2 cut(s)	180, 438
SalI	GTCGAC	1 cut(s)	44
SaqAI	TTAA	3 cut(s)	24, 663, 912
Sau3AI	GATC	6 cut(s)	229, 362, 379, 532, 679, 841
Sau96I	GGNCC	4 cut(s)	208, 282, 746, 973
ScaI	AGTACT	1 cut(s)	395
SchI	GAGTC	4 cut(s)	104, 652, 727, 866
SfaNI	GCATC	3 cut(s)	57, 841, 972
SfcI	CTRYAG	2 cut(s)	397, 702
SinI	GGWCC	3 cut(s)	208, 282, 973
SmiMI	CAYNNNNRTG	2 cut(s)	180, 438
SmlI	CTYRAG	2 cut(s)	605, 950
SmoI	CTYRAG	2 cut(s)	605, 950
Sse9I	AATT	2 cut(s)	127, 286
SsiI	CCGC	2 cut(s)	484, 766
SspMI	CTAG	3 cut(s)	57, 366, 777
StyI	CCWWGG	2 cut(s)	28, 776
TaaI	ACNGT	4 cut(s)	138, 550, 597, 654
TaqI	TCGA	5 cut(s)	45, 361, 538, 844, 860
TaqII	GACCGA	1 cut(s)	26
TasI	AATT	2 cut(s)	127, 286
TatI	WGTACW	1 cut(s)	393
TfiI	GAWTC	6 cut(s)	332, 403, 540, 558, 625, 631
Tru1I	TTAA	3 cut(s)	24, 663, 912
Tru9I	TTAA	3 cut(s)	24, 663, 912
TseFI	GTSAC	1 cut(s)	880
Tsp45I	GTSAC	1 cut(s)	880
TspDTI	ATGAA	2 cut(s)	589, 807
TspGWI	ACGGA	1 cut(s)	94
Tth111I	GACNNNGTC	1 cut(s)	515
VpaK11BI	GGWCC	3 cut(s)	208, 282, 973
XapI	RAATTY	1 cut(s)	127
XceI	RCATGY	1 cut(s)	205
XmaJI	CCTAGG	1 cut(s)	776
XmiI	GTMKAC	3 cut(s)	45, 297, 465
XspI	CTAG	3 cut(s)	57, 366, 777
ZrmI	AGTACT	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.