Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001659

Physical Location & Seq

Genomic Coordinates Reverse (-)

59724243 .. 59725754

Gene Structure 1512 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030332

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGCCACATCATAAGATTGGGTCCGAGTACAAGGTCTACCCAACTTATGATTTTGCTTGTCCATTTGTTGATTCCATTAAAGGTATAACTCATGCCCTTCCATCTAGTGAATATCATGATCACAACGCCCGCAAGCGCAAGCTATTGTTGTTTGTTCAAAATGAGAAGGTCAATGGATGGGATGATCCTCGATTTCCAACTGTTCAAGGAATTGCGCGTCGAGGTCTCAAAGTTGAAGCATTGGTACACTTCATTCTTGAGCAGTATAAAGTGGCTGGAGAGAAGGCAACAACATTCACAAGGAGCATATGGATAGATCGAGCTGATGCAGAGTCGATATCAGTAGATGAGGAAATTGACAAAGACCTAGACAGAAATCTTGTGCTCACAAGGGTTTTGCATCTTGAAGGATCTGTGAAAACCACCGAATTGAAGCTGACCTGGCTGTCACAAATAGATGAACTGCTTGAGGAAGGCGAGAATTTTCTTGTGCTTAACCCACGTACCGAAAAGGAGACAGCAGCTCTTGGGGATCCCAACATGCGAAATCTGAAGCGTGGAGATGTATTGCAACTTGAGAGGAAAGGATACTTAAGCTGTGATGTTCCCTACCTCAGGCTTTCAAAGCCTATTGTTCTCTTTTCAATCCCCGATGGCAGGCAGCAGGCTGGGTTAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003824 GO:0004812 GO:0004818 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006424 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko00970 ko01100 ko01110 ko01120 map00860 map00970 map01100 map01110 map01120

Pfam Domains

Protein Families

GST_C GST_C_3 tRNA-synt_1c tRNA-synt_1c_C

Protein Analysis

227

Amino Acids

25.86

Weight (kDa)

6.4

Isoelectric Point (pI)

35.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1c	PF00749	3 - 42	1.5e-09	tRNA synthetases class I (E and Q), catalytic domain
tRNA-synt_1c	PF00749	45 - 88	1.4e-06	tRNA synthetases class I (E and Q), catalytic domain
tRNA-synt_1c_C2	PF20974	155 - 201	5.8e-09	tRNA synthetases class I (E and Q), anti-codon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26710
fragaria_vesca	FvH4_1g07040 FvH4_3g18420 FvH4_5g29940 FvH4_5g29940 FvH4_6g08750
malus_domestica	MD04G1184100.v1.1 MD12G1197300.v1.1
prunus_persica	Prupe.6G302600_v2.0.a1 Prupe.6G302600_v2.0.a1
pyrus_communis	pycom04g16310
rosa_chinensis	RchiOBHm_Chr1g0323481 RchiOBHm_Chr1g0323531 RchiOBHm_Chr1g0330311 RchiOBHm_Chr1g0330321 RchiOBHm_Chr1g0330421 RchiOBHm_Chr1g0330431 RchiOBHm_Chr3g0459011
rosa_laevigata	RLG00000025126 RLG00000029811 RLG00000030323 RLG00000030332
rosa_multiflora	Rmu_co8493977.1_g000001 Rmu_sc0002634.1_g000044 Rmu_sc0004343.1_g000022 Rmu_sc0007290.1_g000009 Rmu_sc0007290.1_g000010
rosa_roxburghii	Rroxscaffold_4G00319950 Rroxscaffold_4G00319960 Rroxscaffold_6G00420600
rosa_rugosa	Rorug01G0088900 Rorug03G0032500 Rorug05G0414800
rosa_samantha	Rh1AG106700 Rh1AG106800 Rh1CG056600 Rh1CG057900 Rh1CG102700 Rh1CG102800 Rh1DG060600 Rh1DG061700 Rh1DG110600 Rh3BG093600 Rh5DG502200 Rh6BG457000 Rh6BG457100
rosa_wichuraiana	Rw1G008430 Rw1G008550 Rw3G007770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	445
AccI	GTMKAC	1 cut(s)	36
AccII	CGCG	1 cut(s)	217
AciI	CCGC	1 cut(s)	130
AclWI	GGATC	4 cut(s)	179, 418, 527, 540
AcsI	RAATTY	1 cut(s)	481
AcuI	CTGAAG	1 cut(s)	572
AfaI	GTAC	3 cut(s)	29, 246, 505
AfiI	CCNNNNNNNGG	2 cut(s)	615, 657
AflII	CTTAAG	1 cut(s)	592
AgsI	TTSAA	7 cut(s)	158, 206, 236, 407, 433, 624, 645
AjnI	CCWGG	1 cut(s)	440
AluBI	AGCT	5 cut(s)	142, 323, 436, 524, 597
AluI	AGCT	5 cut(s)	142, 323, 436, 524, 597
Alw21I	GWGCWC	1 cut(s)	387
Alw26I	GTCTC	2 cut(s)	230, 509
AlwI	GGATC	4 cut(s)	179, 418, 527, 540
ApeKI	GCWGC	2 cut(s)	521, 661
ApoI	RAATTY	1 cut(s)	481
AspLEI	GCGC	2 cut(s)	138, 217
AspS9I	GGNCC	1 cut(s)	21
AvaII	GGWCC	1 cut(s)	21
AxyI	CCTNAGG	1 cut(s)	614
BaeI	ACNNNNGTAYC	2 cut(s)	487, 520
BamHI	GGATCC	1 cut(s)	532
BarI	GAAGNNNNNNTAC	2 cut(s)	228, 260
Bbv12I	GWGCWC	1 cut(s)	387
BbvI	GCAGC	2 cut(s)	533, 673
BccI	CCATC	3 cut(s)	109, 171, 647
BciT130I	CCWGG	1 cut(s)	442
BciVI	GTATCC	1 cut(s)	581
BclI	TGATCA	1 cut(s)	118
BcoDI	GTCTC	2 cut(s)	230, 509
BfaI	CTAG	2 cut(s)	105, 368
BfrI	CTTAAG	1 cut(s)	592
BfuI	GTATCC	1 cut(s)	581
BisI	GCNGC	2 cut(s)	522, 662
BlsI	GCNGC	2 cut(s)	523, 663
Bme1390I	CCNGG	1 cut(s)	442
Bme18I	GGWCC	1 cut(s)	21
BmgT120I	GGNCC	1 cut(s)	21
BmiI	GGNNCC	2 cut(s)	22, 534
BmrFI	CCNGG	1 cut(s)	442
BmsI	GCATC	2 cut(s)	316, 409
BpmI	CTGGAG	1 cut(s)	297
BpuEI	CTTGAG	3 cut(s)	278, 488, 596
BsaAI	YACGTR	1 cut(s)	503
BsaI	GGTCTC	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	2 cut(s)	615, 657
Bse21I	CCTNAGG	1 cut(s)	614
BseBI	CCWGG	1 cut(s)	442
BseGI	GGATG	2 cut(s)	182, 187
BseLI	CCNNNNNNNGG	2 cut(s)	615, 657
BseMII	CTCAG	1 cut(s)	628
BseXI	GCAGC	2 cut(s)	533, 673
BseYI	CCCAGC	1 cut(s)	668
Bsh1236I	CGCG	1 cut(s)	217
BsiHKAI	GWGCWC	1 cut(s)	387
BslI	CCNNNNNNNGG	2 cut(s)	615, 657
BsmAI	GTCTC	2 cut(s)	230, 509
Bso31I	GGTCTC	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp143I	GATC	5 cut(s)	118, 184, 316, 410, 532
BspACI	CCGC	1 cut(s)	130
BspCNI	CTCAG	1 cut(s)	627
BspFNI	CGCG	1 cut(s)	217
BspHI	TCATGA	1 cut(s)	115
BspLI	GGNNCC	2 cut(s)	22, 534
BspPI	GGATC	4 cut(s)	179, 418, 527, 540
BspTI	CTTAAG	1 cut(s)	592
BspTNI	GGTCTC	1 cut(s)	230
BssMI	GATC	5 cut(s)	118, 184, 316, 410, 532
Bst2UI	CCWGG	1 cut(s)	442
Bst4CI	ACNGT	1 cut(s)	202
BstAFI	CTTAAG	1 cut(s)	592
BstBAI	YACGTR	1 cut(s)	503
BstC8I	GCNNGC	5 cut(s)	130, 134, 140, 659, 666
BstDEI	CTNAG	1 cut(s)	614
BstENI	CCTNNNNNAGG	1 cut(s)	613
BstF5I	GGATG	2 cut(s)	182, 187
BstFNI	CGCG	1 cut(s)	217
BstHHI	GCGC	2 cut(s)	138, 217
BstKTI	GATC	5 cut(s)	121, 187, 319, 413, 535
BstMAI	GTCTC	2 cut(s)	230, 509
BstMBI	GATC	5 cut(s)	118, 184, 316, 410, 532
BstMWI	GCNNNNNNNGC	2 cut(s)	442, 625
BstNI	CCWGG	1 cut(s)	442
BstNSI	RCATGY	1 cut(s)	544
BstSCI	CCNGG	1 cut(s)	440
BstUI	CGCG	1 cut(s)	217
BstV1I	GCAGC	2 cut(s)	533, 673
BstX2I	RGATCY	2 cut(s)	410, 532
BstYI	RGATCY	2 cut(s)	410, 532
Bsu36I	CCTNAGG	1 cut(s)	614
BsuI	GTATCC	1 cut(s)	581
BtsCI	GGATG	2 cut(s)	182, 187
Cac8I	GCNNGC	5 cut(s)	130, 134, 140, 659, 666
CciI	TCATGA	1 cut(s)	115
CfoI	GCGC	2 cut(s)	138, 217
Cfr13I	GGNCC	1 cut(s)	21
CseI	GACGC	1 cut(s)	206
Csp6I	GTAC	3 cut(s)	28, 245, 504
CviAII	CATG	3 cut(s)	92, 116, 541
CviQI	GTAC	3 cut(s)	28, 245, 504
DdeI	CTNAG	1 cut(s)	614
DpnI	GATC	5 cut(s)	120, 186, 318, 412, 534
DpnII	GATC	5 cut(s)	118, 184, 316, 410, 532
DrdI	GACNNNNNNGTC	1 cut(s)	445
DseDI	GACNNNNNNGTC	1 cut(s)	445
Eco31I	GGTCTC	1 cut(s)	230
Eco32I	GATATC	1 cut(s)	339
Eco47I	GGWCC	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	572
Eco81I	CCTNAGG	1 cut(s)	614
EcoNI	CCTNNNNNAGG	1 cut(s)	613
EcoRII	CCWGG	1 cut(s)	440
EcoRV	GATATC	1 cut(s)	339
FaeI	CATG	3 cut(s)	95, 119, 544
FaiI	YATR	9 cut(s)	12, 48, 86, 93, 117, 267, 308, 310, 542
FatI	CATG	3 cut(s)	91, 115, 540
FauI	CCCGC	1 cut(s)	137
FauNDI	CATATG	1 cut(s)	308
FbaI	TGATCA	1 cut(s)	118
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	2 cut(s)	522, 662
FokI	GGATG	2 cut(s)	189, 194
Fsp4HI	GCNGC	2 cut(s)	522, 662
FspBI	CTAG	2 cut(s)	105, 368
GlaI	GCGC	2 cut(s)	137, 216
GluI	GCNGC	2 cut(s)	522, 662
GsaI	CCCAGC	1 cut(s)	672
GsuI	CTGGAG	1 cut(s)	297
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	2 cut(s)	138, 217
Hin1II	CATG	3 cut(s)	95, 119, 544
Hin6I	GCGC	2 cut(s)	136, 215
HinP1I	GCGC	2 cut(s)	136, 215
HinfI	GANTC	2 cut(s)	71, 332
Hpy166II	GTNNAC	2 cut(s)	37, 247
Hpy188I	TCNGA	2 cut(s)	25, 552
Hpy188III	TCNNGA	3 cut(s)	116, 257, 404
Hpy8I	GTNNAC	2 cut(s)	37, 247
Hpy99I	CGWCG	1 cut(s)	222
HpyAV	CCTTC	5 cut(s)	107, 160, 277, 401, 467
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	1 cut(s)	502
HpyCH4V	TGCA	3 cut(s)	329, 400, 571
HpyF10VI	GCNNNNNNNGC	2 cut(s)	442, 625
HpyF3I	CTNAG	1 cut(s)	614
HpySE526I	ACGT	1 cut(s)	502
Hsp92II	CATG	3 cut(s)	95, 119, 544
HspAI	GCGC	2 cut(s)	136, 215
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	5 cut(s)	118, 184, 316, 410, 532
LmnI	GCTCC	1 cut(s)	303
LpnPI	CCDG	7 cut(s)	261, 427, 454, 601, 643, 650, 654
Lsp1109I	GCAGC	2 cut(s)	533, 673
LweI	GCATC	2 cut(s)	316, 409
MaeI	CTAG	2 cut(s)	105, 368
MaeII	ACGT	1 cut(s)	502
MaeIII	GTNAC	1 cut(s)	447
MalI	GATC	5 cut(s)	120, 186, 318, 412, 534
MboI	GATC	5 cut(s)	118, 184, 316, 410, 532
MflI	RGATCY	2 cut(s)	410, 532
MhlI	GDGCHC	1 cut(s)	387
MluCI	AATT	4 cut(s)	210, 354, 428, 481
MlyI	GAGTC	1 cut(s)	341
MmeI	TCCRAC	1 cut(s)	221
MnlI	CCTC	6 cut(s)	198, 215, 343, 463, 573, 623
MseI	TTAA	4 cut(s)	78, 495, 593, 674
MspCI	CTTAAG	1 cut(s)	592
MspR9I	CCNGG	1 cut(s)	442
MvaI	CCWGG	1 cut(s)	442
MvnI	CGCG	1 cut(s)	217
MwoI	GCNNNNNNNGC	2 cut(s)	442, 625
NdeI	CATATG	1 cut(s)	308
NdeII	GATC	5 cut(s)	118, 184, 316, 410, 532
NlaIII	CATG	3 cut(s)	95, 119, 544
NlaIV	GGNNCC	2 cut(s)	22, 534
NmuCI	GTSAC	1 cut(s)	447
NspI	RCATGY	1 cut(s)	544
PagI	TCATGA	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	71
PkrI	GCNGC	2 cut(s)	523, 663
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
Ppu21I	YACGTR	1 cut(s)	503
Psp6I	CCWGG	1 cut(s)	440
PspFI	CCCAGC	1 cut(s)	668
PspGI	CCWGG	1 cut(s)	440
PspN4I	GGNNCC	2 cut(s)	22, 534
PspPI	GGNCC	1 cut(s)	21
PsuI	RGATCY	2 cut(s)	410, 532
RsaI	GTAC	3 cut(s)	29, 246, 505
RsaNI	GTAC	3 cut(s)	28, 245, 504
SaqAI	TTAA	4 cut(s)	78, 495, 593, 674
SatI	GCNGC	2 cut(s)	522, 662
Sau3AI	GATC	5 cut(s)	118, 184, 316, 410, 532
Sau96I	GGNCC	1 cut(s)	21
SchI	GAGTC	1 cut(s)	341
ScrFI	CCNGG	1 cut(s)	442
SduI	GDGCHC	1 cut(s)	387
SfaNI	GCATC	2 cut(s)	316, 409
SinI	GGWCC	1 cut(s)	21
SmlI	CTYRAG	4 cut(s)	257, 467, 575, 592
SmoI	CTYRAG	4 cut(s)	257, 467, 575, 592
Sse9I	AATT	4 cut(s)	210, 354, 428, 481
SsiI	CCGC	1 cut(s)	130
SspMI	CTAG	2 cut(s)	105, 368
StyD4I	CCNGG	1 cut(s)	440
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	1 cut(s)	505
TaqI	TCGA	4 cut(s)	190, 220, 319, 335
TasI	AATT	4 cut(s)	210, 354, 428, 481
TatI	WGTACW	1 cut(s)	27
TfiI	GAWTC	1 cut(s)	71
Tru1I	TTAA	4 cut(s)	78, 495, 593, 674
Tru9I	TTAA	4 cut(s)	78, 495, 593, 674
TseFI	GTSAC	1 cut(s)	447
TseI	GCWGC	2 cut(s)	521, 661
Tsp45I	GTSAC	1 cut(s)	447
TspDTI	ATGAA	2 cut(s)	241, 474
Vha464I	CTTAAG	1 cut(s)	592
VpaK11BI	GGWCC	1 cut(s)	21
XagI	CCTNNNNNAGG	1 cut(s)	613
XapI	RAATTY	1 cut(s)	481
XceI	RCATGY	1 cut(s)	544
XmiI	GTMKAC	1 cut(s)	36
XspI	CTAG	2 cut(s)	105, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.