Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001659

Physical Location & Seq

Genomic Coordinates Forward (+)

10952016 .. 10953537

Gene Structure 1522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55339

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGCCACATCATAAGACTGGGTCCGAGTACAAGGTCTACCCAACTTATGATTTTGCTTGTCCATTTGTTGATTCCATTGAAGGTATAACTCATGCCCTTCGATCTAGTGAATATCATGATCGCAACGCCCAGTACTATCGGATTCAAGAGGATATGGAACTGAGAGAAAAGTGCATCTGTATGAGTTCAAAGGTCAATGGATGGGATGATCCTCGATTTCCAAATGTTCAAGGAATTGTGCGTCGAAGTCTCAAAGTTGAAGCATTGATACAGTTCATTCTTGAACAGTATAAAGGAGCTGGAGAGAAGGTAACAAGATTCACAAGGAGCATATGGATAGATCGAGCTGATGCAGAGTCGATATCAGTAGATGAGGAAGTGACATTGATGGATTGGGGGAATGCCATTGTTAAGATTGACAAAGACCTAGACGGAAATCTTGTGCTCACAAGGGTTTTGCATCTTGAAGGATCTGTGAAAACCACCGAATTGAAGCTTACCTGGCTGCCACAAATAGATGAAATGCTTGAGGAAGACAAGAATTTTCTTGATGTGCTTAACCCATGTACCGAAAAGGAGACAGCAGCTCTTGGGGATCCCAAAATGCGAAATCTGAAGCGTGGAGATGTATTGCAACTTGAGAGGAAAGGATATCACAGCTTAAATGTTCCCTACCTCAGGCTTTCAAAGCCTATTGTTCTCTTTTTGATCAATCCCCGATGGCAGGCAGCAGGCTGGGTTAAAGTAAGAACTTCGTCAAGAATATTTGGCTTCAGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003824 GO:0004812 GO:0004818 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006424 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko00970 ko01100 ko01110 ko01120 map00860 map00970 map01100 map01110 map01120

Pfam Domains

Protein Families

GST_C GST_C_3 tRNA-synt_1c tRNA-synt_1c_C

Protein Analysis

260

Amino Acids

30.15

Weight (kDa)

6.61

Isoelectric Point (pI)

41.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1c	PF00749	3 - 64	2.5e-15	tRNA synthetases class I (E and Q), catalytic domain
tRNA-synt_1c_C	PF03950	98 - 148	1e-08	tRNA synthetases class I (E and Q), anti-codon binding domain
tRNA-synt_1c_C2	PF20974	178 - 219	4.1e-07	tRNA synthetases class I (E and Q), anti-codon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26710
fragaria_vesca	FvH4_1g07040 FvH4_3g18420 FvH4_5g29940 FvH4_5g29940 FvH4_6g08750
malus_domestica	MD04G1184100.v1.1 MD12G1197300.v1.1
prunus_persica	Prupe.6G302600_v2.0.a1 Prupe.6G302600_v2.0.a1
pyrus_communis	pycom04g16310
rosa_chinensis	RchiOBHm_Chr1g0323481 RchiOBHm_Chr1g0323531 RchiOBHm_Chr1g0330311 RchiOBHm_Chr1g0330321 RchiOBHm_Chr1g0330421 RchiOBHm_Chr1g0330431 RchiOBHm_Chr3g0459011
rosa_laevigata	RLG00000025126 RLG00000029811 RLG00000030323 RLG00000030332
rosa_multiflora	Rmu_co8493977.1_g000001 Rmu_sc0002634.1_g000044 Rmu_sc0004343.1_g000022 Rmu_sc0007290.1_g000009 Rmu_sc0007290.1_g000010
rosa_roxburghii	Rroxscaffold_4G00319950 Rroxscaffold_4G00319960 Rroxscaffold_6G00420600
rosa_rugosa	Rorug01G0088900 Rorug03G0032500 Rorug05G0414800
rosa_samantha	Rh1AG106700 Rh1AG106800 Rh1CG056600 Rh1CG057900 Rh1CG102700 Rh1CG102800 Rh1DG060600 Rh1DG061700 Rh1DG110600 Rh3BG093600 Rh5DG502200 Rh6BG457000 Rh6BG457100
rosa_wichuraiana	Rw1G008430 Rw1G008550 Rw3G007770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	36
AclWI	GGATC	4 cut(s)	203, 478, 590, 603
AcsI	RAATTY	1 cut(s)	541
AcuI	CTGAAG	2 cut(s)	635, 757
AfaI	GTAC	3 cut(s)	29, 134, 568
AfiI	CCNNNNNNNGG	2 cut(s)	678, 724
AgsI	TTSAA	9 cut(s)	80, 146, 189, 230, 260, 284, 467, 493, 687
AjnI	CCWGG	1 cut(s)	500
AluBI	AGCT	5 cut(s)	299, 347, 496, 587, 660
AluI	AGCT	5 cut(s)	299, 347, 496, 587, 660
Alw21I	GWGCWC	1 cut(s)	447
Alw26I	GTCTC	2 cut(s)	254, 572
AlwI	GGATC	4 cut(s)	203, 478, 590, 603
ApeKI	GCWGC	3 cut(s)	505, 584, 728
ApoI	RAATTY	1 cut(s)	541
AspS9I	GGNCC	1 cut(s)	21
AvaII	GGWCC	1 cut(s)	21
AxyI	CCTNAGG	1 cut(s)	677
BaeI	ACNNNNGTAYC	2 cut(s)	550, 583
BamHI	GGATCC	1 cut(s)	595
BarI	GAAGNNNNNNTAC	2 cut(s)	252, 284
BbsI	GAAGAC	1 cut(s)	540
Bbv12I	GWGCWC	1 cut(s)	447
BbvI	GCAGC	3 cut(s)	492, 596, 740
BccI	CCATC	3 cut(s)	195, 382, 714
BciT130I	CCWGG	1 cut(s)	502
BclI	TGATCA	1 cut(s)	708
BcoDI	GTCTC	2 cut(s)	254, 572
BfaI	CTAG	2 cut(s)	105, 428
BisI	GCNGC	3 cut(s)	506, 585, 729
BlsI	GCNGC	3 cut(s)	507, 586, 730
BmcAI	AGTACT	1 cut(s)	134
Bme1390I	CCNGG	1 cut(s)	502
Bme18I	GGWCC	1 cut(s)	21
BmgT120I	GGNCC	1 cut(s)	21
BmiI	GGNNCC	2 cut(s)	22, 597
BmrFI	CCNGG	1 cut(s)	502
BmrI	ACTGGG	2 cut(s)	27, 124
BmsI	GCATC	3 cut(s)	183, 340, 469
BmuI	ACTGGG	2 cut(s)	27, 124
BpiI	GAAGAC	1 cut(s)	540
BpmI	CTGGAG	1 cut(s)	321
BpuEI	CTTGAG	2 cut(s)	548, 659
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	2 cut(s)	678, 724
Bse1I	ACTGG	2 cut(s)	22, 130
Bse21I	CCTNAGG	1 cut(s)	677
BseBI	CCWGG	1 cut(s)	502
BseGI	GGATG	2 cut(s)	206, 211
BseLI	CCNNNNNNNGG	2 cut(s)	678, 724
BseMII	CTCAG	2 cut(s)	152, 691
BseNI	ACTGG	2 cut(s)	22, 130
BseXI	GCAGC	3 cut(s)	492, 596, 740
BseYI	CCCAGC	1 cut(s)	735
BsiHKAI	GWGCWC	1 cut(s)	447
BslI	CCNNNNNNNGG	2 cut(s)	678, 724
BsmAI	GTCTC	2 cut(s)	254, 572
BsmI	GAATGC	1 cut(s)	406
Bsp1286I	GDGCHC	1 cut(s)	447
Bsp143I	GATC	7 cut(s)	101, 118, 208, 340, 470, 595, 708
BspCNI	CTCAG	2 cut(s)	153, 690
BspHI	TCATGA	1 cut(s)	115
BspLI	GGNNCC	2 cut(s)	22, 597
BspPI	GGATC	4 cut(s)	203, 478, 590, 603
BsrI	ACTGG	2 cut(s)	22, 130
BssMI	GATC	7 cut(s)	101, 118, 208, 340, 470, 595, 708
Bst2UI	CCWGG	1 cut(s)	502
Bst4CI	ACNGT	2 cut(s)	273, 288
BstC8I	GCNNGC	2 cut(s)	726, 733
BstDEI	CTNAG	2 cut(s)	161, 677
BstENI	CCTNNNNNAGG	1 cut(s)	676
BstF5I	GGATG	2 cut(s)	206, 211
BstKTI	GATC	7 cut(s)	104, 121, 211, 343, 473, 598, 711
BstMAI	GTCTC	2 cut(s)	254, 572
BstMBI	GATC	7 cut(s)	101, 118, 208, 340, 470, 595, 708
BstMWI	GCNNNNNNNGC	2 cut(s)	502, 688
BstNI	CCWGG	1 cut(s)	502
BstSCI	CCNGG	1 cut(s)	500
BstV1I	GCAGC	3 cut(s)	492, 596, 740
BstV2I	GAAGAC	1 cut(s)	540
BstX2I	RGATCY	2 cut(s)	470, 595
BstYI	RGATCY	2 cut(s)	470, 595
Bsu36I	CCTNAGG	1 cut(s)	677
BtsCI	GGATG	2 cut(s)	206, 211
Cac8I	GCNNGC	2 cut(s)	726, 733
CciI	TCATGA	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	21
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	3 cut(s)	28, 133, 567
CviAII	CATG	3 cut(s)	92, 116, 564
CviQI	GTAC	3 cut(s)	28, 133, 567
DdeI	CTNAG	2 cut(s)	161, 677
DpnI	GATC	7 cut(s)	103, 120, 210, 342, 472, 597, 710
DpnII	GATC	7 cut(s)	101, 118, 208, 340, 470, 595, 708
Eco32I	GATATC	2 cut(s)	363, 653
Eco47I	GGWCC	1 cut(s)	21
Eco57I	CTGAAG	2 cut(s)	635, 757
Eco81I	CCTNAGG	1 cut(s)	677
EcoNI	CCTNNNNNAGG	1 cut(s)	676
EcoRII	CCWGG	1 cut(s)	500
EcoRV	GATATC	2 cut(s)	363, 653
FaeI	CATG	3 cut(s)	95, 119, 567
FatI	CATG	3 cut(s)	91, 115, 563
FauNDI	CATATG	1 cut(s)	332
FbaI	TGATCA	1 cut(s)	708
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	3 cut(s)	506, 585, 729
FokI	GGATG	2 cut(s)	213, 218
Fsp4HI	GCNGC	3 cut(s)	506, 585, 729
FspBI	CTAG	2 cut(s)	105, 428
GluI	GCNGC	3 cut(s)	506, 585, 729
GsaI	CCCAGC	1 cut(s)	739
GsuI	CTGGAG	1 cut(s)	321
HgaI	GACGC	1 cut(s)	230
Hin1II	CATG	3 cut(s)	95, 119, 567
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	4 cut(s)	71, 142, 318, 356
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	4 cut(s)	25, 141, 615, 776
Hpy188III	TCNNGA	6 cut(s)	116, 146, 281, 464, 548, 759
Hpy8I	GTNNAC	1 cut(s)	37
Hpy99I	CGWCG	1 cut(s)	246
HpyAV	CCTTC	4 cut(s)	74, 107, 301, 461
HpyCH4III	ACNGT	2 cut(s)	273, 288
HpyCH4V	TGCA	4 cut(s)	174, 353, 460, 634
HpyF10VI	GCNNNNNNNGC	2 cut(s)	502, 688
HpyF3I	CTNAG	2 cut(s)	161, 677
Hsp92II	CATG	3 cut(s)	95, 119, 567
Ksp22I	TGATCA	1 cut(s)	708
Kzo9I	GATC	7 cut(s)	101, 118, 208, 340, 470, 595, 708
LmnI	GCTCC	2 cut(s)	296, 327
LpnPI	CCDG	9 cut(s)	3, 143, 285, 487, 514, 664, 710, 717, 721
Lsp1109I	GCAGC	3 cut(s)	492, 596, 740
LweI	GCATC	3 cut(s)	183, 340, 469
MaeI	CTAG	2 cut(s)	105, 428
MaeIII	GTNAC	2 cut(s)	310, 379
MalI	GATC	7 cut(s)	103, 120, 210, 342, 472, 597, 710
MboI	GATC	7 cut(s)	101, 118, 208, 340, 470, 595, 708
MboII	GAAGA	1 cut(s)	545
MflI	RGATCY	2 cut(s)	470, 595
MhlI	GDGCHC	1 cut(s)	447
MluCI	AATT	3 cut(s)	234, 488, 541
MlyI	GAGTC	1 cut(s)	365
MnlI	CCTC	6 cut(s)	142, 222, 367, 523, 636, 686
MseI	TTAA	4 cut(s)	411, 558, 662, 741
MslI	CAYNNNNRTG	1 cut(s)	179
MspR9I	CCNGG	1 cut(s)	502
Mva1269I	GAATGC	1 cut(s)	406
MvaI	CCWGG	1 cut(s)	502
MwoI	GCNNNNNNNGC	2 cut(s)	502, 688
NdeI	CATATG	1 cut(s)	332
NdeII	GATC	7 cut(s)	101, 118, 208, 340, 470, 595, 708
NlaIII	CATG	3 cut(s)	95, 119, 567
NlaIV	GGNNCC	2 cut(s)	22, 597
NmuCI	GTSAC	1 cut(s)	379
PagI	TCATGA	1 cut(s)	115
PctI	GAATGC	1 cut(s)	406
PfeI	GAWTC	3 cut(s)	71, 142, 318
PflFI	GACNNNGTC	1 cut(s)	19
PkrI	GCNGC	3 cut(s)	507, 586, 730
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	500
PspFI	CCCAGC	1 cut(s)	735
PspGI	CCWGG	1 cut(s)	500
PspN4I	GGNNCC	2 cut(s)	22, 597
PspPI	GGNCC	1 cut(s)	21
PsuI	RGATCY	2 cut(s)	470, 595
PsyI	GACNNNGTC	1 cut(s)	19
RsaI	GTAC	3 cut(s)	29, 134, 568
RsaNI	GTAC	3 cut(s)	28, 133, 567
RseI	CAYNNNNRTG	1 cut(s)	179
SaqAI	TTAA	4 cut(s)	411, 558, 662, 741
SatI	GCNGC	3 cut(s)	506, 585, 729
Sau3AI	GATC	7 cut(s)	101, 118, 208, 340, 470, 595, 708
Sau96I	GGNCC	1 cut(s)	21
ScaI	AGTACT	1 cut(s)	134
SchI	GAGTC	1 cut(s)	365
ScrFI	CCNGG	1 cut(s)	502
SduI	GDGCHC	1 cut(s)	447
SfaNI	GCATC	3 cut(s)	183, 340, 469
SinI	GGWCC	1 cut(s)	21
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	2 cut(s)	527, 638
SmoI	CTYRAG	2 cut(s)	527, 638
Sse9I	AATT	3 cut(s)	234, 488, 541
SspI	AATATT	1 cut(s)	765
SspMI	CTAG	2 cut(s)	105, 428
StyD4I	CCNGG	1 cut(s)	500
TaaI	ACNGT	2 cut(s)	273, 288
TaqI	TCGA	5 cut(s)	100, 214, 244, 343, 359
TasI	AATT	3 cut(s)	234, 488, 541
TatI	WGTACW	2 cut(s)	27, 132
TfiI	GAWTC	3 cut(s)	71, 142, 318
Tru1I	TTAA	4 cut(s)	411, 558, 662, 741
Tru9I	TTAA	4 cut(s)	411, 558, 662, 741
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	3 cut(s)	505, 584, 728
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	2 cut(s)	265, 534
TspGWI	ACGGA	1 cut(s)	447
Tth111I	GACNNNGTC	1 cut(s)	19
VpaK11BI	GGWCC	1 cut(s)	21
XagI	CCTNNNNNAGG	1 cut(s)	676
XapI	RAATTY	1 cut(s)	541
XmiI	GTMKAC	1 cut(s)	36
XspI	CTAG	2 cut(s)	105, 428
ZrmI	AGTACT	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.