Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001659

Physical Location & Seq

Genomic Coordinates Reverse (-)

20152976 .. 20154286

Gene Structure 1311 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55963

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGAAGGACAAGGTCGATGCAGAAGTGTGTTCGTGGTGTGCCGGGAAAAAATGCTCAGCGAAATTGAAAGAGAACCCAGCCAGCAGTCAGCAGTCGAAGACTAAAGCAGGAACCACCCGAGGAACATTCGAGGTAGATCTACCGGAGGCTGAGGCTGGAAAGGTGAAGTTGAGGTTTGCGCCGGAACCAAGTGGTTATCTTCACATTGGGCACTCGAAAGCAGCTTTACTGAATCAGTATTTTGCTCAGCGGTATCAAGGTCAGCTTATTACTTTGGGTATCAAGTATGAGAAGGTTACCCATACTTCAGATCACTTCGGTGAGTTGATGGATATGACCGAGGAGCTGATTAACCAAGGTAAAGCATATGTCGACGATACACCTAGAGAAGAGATGCAAAAGCAACGGATGGATGGGATTGAGTCCAAGTGTAGAAACCACAGCAAAGAGGAAAATTTGAAACTGTGGGAGGAAATGAAAGCAGGTTCAGAGAGGGGTCTGCATTGTTGTGTTAGAGGGAAGCTGGACATGCAGGACCCTAATAAATCACTCAGAGATCCAGTTTATTATGTTGAACGTGGTCTATATGACTATACACTCCTAAGCAAGCGCAAGCTTTTGTGGTTTGTTCAAAATGACAAGGTCAATGGATGGGACGATCCTCGATTCCCAACTGTTCAAGGAATTGTGCGTAGAGGTCTCAAAGTTGAAGCATTGATACAGTTCATTCTTGAGCAGGGGGCTTCAAAGAATCTGAATCTTATGGAATGGGACAAACTGTGGACAATTAACAAGAAGATTATTGATCCTGTATGCCCAAGACATACTGCTGTCACTGAAGAGGGACGAGTGTTGTTGACTCTCTCTAATGGCCCTGAGAAGCCATTTGTCCGCATAATACCTAGGCATAAGAAGTATGAAGGTGCTGGAGAGAAGGCAACAACGTTCACAAGGAGCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003824 GO:0004812 GO:0004818 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006424 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko00970 ko01100 ko01110 ko01120 map00860 map00970 map01100 map01110 map01120

Pfam Domains

Protein Families

GST_C GST_C_3 tRNA-synt_1c tRNA-synt_1c_C

Protein Analysis

320

Amino Acids

36.58

Weight (kDa)

8.97

Isoelectric Point (pI)

27.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1c	PF00749	54 - 90	2.3e-14	tRNA synthetases class I (E and Q), catalytic domain
tRNA-synt_1c	PF00749	91 - 190	1.2e-23	tRNA synthetases class I (E and Q), catalytic domain
tRNA-synt_1c	PF00749	197 - 269	6.4e-14	tRNA synthetases class I (E and Q), catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26710
fragaria_vesca	FvH4_1g07040 FvH4_3g18420 FvH4_5g29940 FvH4_5g29940 FvH4_6g08750
malus_domestica	MD04G1184100.v1.1 MD12G1197300.v1.1
prunus_persica	Prupe.6G302600_v2.0.a1 Prupe.6G302600_v2.0.a1
pyrus_communis	pycom04g16310
rosa_chinensis	RchiOBHm_Chr1g0323481 RchiOBHm_Chr1g0323531 RchiOBHm_Chr1g0330311 RchiOBHm_Chr1g0330321 RchiOBHm_Chr1g0330421 RchiOBHm_Chr1g0330431 RchiOBHm_Chr3g0459011
rosa_laevigata	RLG00000025126 RLG00000029811 RLG00000030323 RLG00000030332
rosa_multiflora	Rmu_co8493977.1_g000001 Rmu_sc0002634.1_g000044 Rmu_sc0004343.1_g000022 Rmu_sc0007290.1_g000009 Rmu_sc0007290.1_g000010
rosa_roxburghii	Rroxscaffold_4G00319950 Rroxscaffold_4G00319960 Rroxscaffold_6G00420600
rosa_rugosa	Rorug01G0088900 Rorug03G0032500 Rorug05G0414800
rosa_samantha	Rh1AG106700 Rh1AG106800 Rh1CG056600 Rh1CG057900 Rh1CG102700 Rh1CG102800 Rh1DG060600 Rh1DG061700 Rh1DG110600 Rh3BG093600 Rh5DG502200 Rh6BG457000 Rh6BG457100
rosa_wichuraiana	Rw1G008430 Rw1G008550 Rw3G007770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	473
AccI	GTMKAC	1 cut(s)	372
AciI	CCGC	2 cut(s)	250, 892
AclI	AACGTT	1 cut(s)	944
AclWI	GGATC	3 cut(s)	551, 653, 800
AcsI	RAATTY	1 cut(s)	454
AcuI	CTGAAG	2 cut(s)	291, 858
AgsI	TTSAA	7 cut(s)	67, 460, 575, 632, 680, 710, 747
AleI	CACNNNNGTG	1 cut(s)	318
AluBI	AGCT	5 cut(s)	224, 265, 346, 523, 616
AluI	AGCT	5 cut(s)	224, 265, 346, 523, 616
Alw26I	GTCTC	1 cut(s)	704
AlwI	GGATC	3 cut(s)	551, 653, 800
Ama87I	CYCGRG	1 cut(s)	117
AoxI	GGCC	1 cut(s)	871
ApeKI	GCWGC	1 cut(s)	221
ApoI	RAATTY	1 cut(s)	454
AspA2I	CCTAGG	1 cut(s)	902
AspLEI	GCGC	2 cut(s)	181, 612
AspS9I	GGNCC	2 cut(s)	535, 872
AsuC2I	CCSGG	1 cut(s)	43
AsuHPI	GGTGA	2 cut(s)	175, 332
AvaI	CYCGRG	1 cut(s)	117
AvaII	GGWCC	1 cut(s)	535
AvrII	CCTAGG	1 cut(s)	902
BaeGI	GKGCMC	1 cut(s)	213
BarI	GAAGNNNNNNTAC	2 cut(s)	702, 734
BbsI	GAAGAC	1 cut(s)	104
BbvCI	CCTCAGC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	4 cut(s)	322, 403, 407, 645
BcnI	CCSGG	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	704
BfaI	CTAG	2 cut(s)	384, 903
BfuAI	ACCTGC	1 cut(s)	473
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	1 cut(s)	222
BlnI	CCTAGG	1 cut(s)	902
BlpI	GCTNAGC	2 cut(s)	55, 246
BlsI	GCNGC	1 cut(s)	223
Bme1390I	CCNGG	1 cut(s)	43
Bme18I	GGWCC	1 cut(s)	535
BmeT110I	CYCGRG	1 cut(s)	117
BmgT120I	GGNCC	2 cut(s)	535, 872
BmiI	GGNNCC	3 cut(s)	112, 186, 537
BmrFI	CCNGG	1 cut(s)	43
BmsI	GCATC	2 cut(s)	7, 384
BpiI	GAAGAC	1 cut(s)	104
BpmI	CTGGAG	1 cut(s)	948
Bpu10I	CCTNAGC	2 cut(s)	150, 602
Bpu1102I	GCTNAGC	2 cut(s)	55, 246
BpuEI	CTTGAG	1 cut(s)	752
BpuMI	CCSGG	1 cut(s)	43
BsaI	GGTCTC	1 cut(s)	704
BsaJI	CCNNGG	4 cut(s)	118, 339, 355, 902
BsaWI	WCCGGW	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	560
BseDI	CCNNGG	4 cut(s)	118, 339, 355, 902
BseGI	GGATG	3 cut(s)	414, 418, 656
BseMII	CTCAG	5 cut(s)	69, 141, 260, 565, 867
BseNI	ACTGG	1 cut(s)	560
BseRI	GAGGAG	1 cut(s)	356
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	1 cut(s)	233
BseYI	CCCAGC	1 cut(s)	76
BshFI	GGCC	1 cut(s)	873
BsiHKCI	CYCGRG	1 cut(s)	117
BsiSI	CCGG	3 cut(s)	42, 143, 182
BslFI	GGGAC	3 cut(s)	668, 785, 858
BsmAI	GTCTC	1 cut(s)	704
BsmFI	GGGAC	3 cut(s)	668, 785, 858
BsnI	GGCC	1 cut(s)	873
Bso31I	GGTCTC	1 cut(s)	704
BsoBI	CYCGRG	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	5 cut(s)	136, 310, 556, 658, 805
Bsp1720I	GCTNAGC	2 cut(s)	55, 246
BspACI	CCGC	2 cut(s)	250, 892
BspANI	GGCC	1 cut(s)	873
BspCNI	CTCAG	5 cut(s)	68, 142, 259, 564, 868
BspLI	GGNNCC	3 cut(s)	112, 186, 537
BspMI	ACCTGC	1 cut(s)	473
BspPI	GGATC	3 cut(s)	551, 653, 800
BspTNI	GGTCTC	1 cut(s)	704
BsrI	ACTGG	1 cut(s)	560
BssECI	CCNNGG	4 cut(s)	118, 339, 355, 902
BssMI	GATC	5 cut(s)	136, 310, 556, 658, 805
BssT1I	CCWWGG	2 cut(s)	355, 902
Bst4CI	ACNGT	4 cut(s)	465, 676, 723, 780
Bst6I	CTCTTC	2 cut(s)	384, 834
BstC8I	GCNNGC	3 cut(s)	82, 608, 614
BstDEI	CTNAG	6 cut(s)	55, 150, 246, 551, 602, 876
BstEII	GGTNACC	1 cut(s)	295
BstF5I	GGATG	3 cut(s)	414, 418, 656
BstHHI	GCGC	2 cut(s)	181, 612
BstKTI	GATC	5 cut(s)	139, 313, 559, 661, 808
BstMAI	GTCTC	1 cut(s)	704
BstMBI	GATC	5 cut(s)	136, 310, 556, 658, 805
BstMWI	GCNNNNNNNGC	1 cut(s)	529
BstNSI	RCATGY	1 cut(s)	532
BstPI	GGTNACC	1 cut(s)	295
BstSCI	CCNGG	1 cut(s)	41
BstSLI	GKGCMC	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	233
BstV2I	GAAGAC	1 cut(s)	104
BstX2I	RGATCY	2 cut(s)	136, 556
BstYI	RGATCY	2 cut(s)	136, 556
BsuRI	GGCC	1 cut(s)	873
BtsCI	GGATG	3 cut(s)	414, 418, 656
BtsIMutI	CAGTG	1 cut(s)	834
BveI	ACCTGC	1 cut(s)	473
Cac8I	GCNNGC	3 cut(s)	82, 608, 614
CfoI	GCGC	2 cut(s)	181, 612
Cfr13I	GGNCC	2 cut(s)	535, 872
CviAII	CATG	1 cut(s)	529
DdeI	CTNAG	6 cut(s)	55, 150, 246, 551, 602, 876
DpnI	GATC	5 cut(s)	138, 312, 558, 660, 807
DpnII	GATC	5 cut(s)	136, 310, 556, 658, 805
Eam1104I	CTCTTC	2 cut(s)	384, 834
EarI	CTCTTC	2 cut(s)	384, 834
Eco130I	CCWWGG	2 cut(s)	355, 902
Eco31I	GGTCTC	1 cut(s)	704
Eco47I	GGWCC	1 cut(s)	535
Eco57I	CTGAAG	2 cut(s)	291, 858
Eco88I	CYCGRG	1 cut(s)	117
Eco91I	GGTNACC	1 cut(s)	295
EcoO109I	RGGNCCY	1 cut(s)	535
EcoO65I	GGTNACC	1 cut(s)	295
EcoT14I	CCWWGG	2 cut(s)	355, 902
ErhI	CCWWGG	2 cut(s)	355, 902
FaeI	CATG	1 cut(s)	532
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FaqI	GGGAC	3 cut(s)	668, 785, 858
FatI	CATG	1 cut(s)	528
FauNDI	CATATG	2 cut(s)	367, 959
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	3 cut(s)	421, 425, 663
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	2 cut(s)	384, 903
GlaI	GCGC	2 cut(s)	180, 611
GluI	GCNGC	1 cut(s)	222
GsaI	CCCAGC	1 cut(s)	80
GsuI	CTGGAG	1 cut(s)	948
HaeIII	GGCC	1 cut(s)	873
HapII	CCGG	3 cut(s)	42, 143, 182
HhaI	GCGC	2 cut(s)	181, 612
Hin1II	CATG	1 cut(s)	532
Hin6I	GCGC	2 cut(s)	179, 610
HinP1I	GCGC	2 cut(s)	179, 610
HincII	GTYRAC	2 cut(s)	373, 858
HindII	GTYRAC	2 cut(s)	373, 858
HindIII	AAGCTT	1 cut(s)	614
HinfI	GANTC	6 cut(s)	232, 422, 666, 751, 757, 859
HpaII	CCGG	3 cut(s)	42, 143, 182
HphI	GGTGA	2 cut(s)	175, 332
Hpy166II	GTNNAC	4 cut(s)	373, 783, 858, 948
Hpy188I	TCNGA	4 cut(s)	310, 490, 554, 756
Hpy188III	TCNNGA	1 cut(s)	731
Hpy8I	GTNNAC	4 cut(s)	373, 783, 858, 948
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	3 cut(s)	286, 914, 928
HpyCH4III	ACNGT	4 cut(s)	465, 676, 723, 780
HpyCH4IV	ACGT	2 cut(s)	577, 944
HpyCH4V	TGCA	4 cut(s)	20, 397, 502, 532
HpyF10VI	GCNNNNNNNGC	1 cut(s)	529
HpyF3I	CTNAG	6 cut(s)	55, 150, 246, 551, 602, 876
HpySE526I	ACGT	2 cut(s)	577, 944
Hsp92II	CATG	1 cut(s)	532
HspAI	GCGC	2 cut(s)	179, 610
Kzo9I	GATC	5 cut(s)	136, 310, 556, 658, 805
LmnI	GCTCC	2 cut(s)	343, 954
Lsp1109I	GCAGC	1 cut(s)	233
LweI	GCATC	2 cut(s)	7, 384
MaeI	CTAG	2 cut(s)	384, 903
MaeII	ACGT	2 cut(s)	577, 944
MaeIII	GTNAC	2 cut(s)	295, 832
MalI	GATC	5 cut(s)	138, 312, 558, 660, 807
MboI	GATC	5 cut(s)	136, 310, 556, 658, 805
MboII	GAAGA	5 cut(s)	109, 191, 401, 808, 851
MflI	RGATCY	2 cut(s)	136, 556
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	4 cut(s)	62, 454, 684, 786
MlyI	GAGTC	2 cut(s)	431, 853
MseI	TTAA	2 cut(s)	351, 789
MslI	CAYNNNNRTG	2 cut(s)	318, 507
MspA1I	CMGCKG	1 cut(s)	250
MspI	CCGG	3 cut(s)	42, 143, 182
MspR9I	CCNGG	1 cut(s)	43
MwoI	GCNNNNNNNGC	1 cut(s)	529
NciI	CCSGG	1 cut(s)	43
NdeI	CATATG	2 cut(s)	367, 959
NdeII	GATC	5 cut(s)	136, 310, 556, 658, 805
NlaIII	CATG	1 cut(s)	532
NlaIV	GGNNCC	3 cut(s)	112, 186, 537
NmuCI	GTSAC	1 cut(s)	832
NspI	RCATGY	1 cut(s)	532
OliI	CACNNNNGTG	1 cut(s)	318
PfeI	GAWTC	4 cut(s)	232, 666, 751, 757
PflFI	GACNNNGTC	2 cut(s)	11, 641
PkrI	GCNGC	1 cut(s)	223
PleI	GAGTC	2 cut(s)	430, 853
PpsI	GAGTC	2 cut(s)	430, 853
PpuMI	RGGWCCY	1 cut(s)	535
Psp1406I	AACGTT	1 cut(s)	944
Psp5II	RGGWCCY	1 cut(s)	535
PspEI	GGTNACC	1 cut(s)	295
PspFI	CCCAGC	1 cut(s)	76
PspN4I	GGNNCC	3 cut(s)	112, 186, 537
PspPI	GGNCC	2 cut(s)	535, 872
PspPPI	RGGWCCY	1 cut(s)	535
PsuI	RGATCY	2 cut(s)	136, 556
PsyI	GACNNNGTC	2 cut(s)	11, 641
RseI	CAYNNNNRTG	2 cut(s)	318, 507
SalI	GTCGAC	1 cut(s)	371
SaqAI	TTAA	2 cut(s)	351, 789
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	5 cut(s)	136, 310, 556, 658, 805
Sau96I	GGNCC	2 cut(s)	535, 872
SchI	GAGTC	2 cut(s)	431, 853
ScrFI	CCNGG	1 cut(s)	43
SduI	GDGCHC	1 cut(s)	213
SfaNI	GCATC	2 cut(s)	7, 384
SinI	GGWCC	1 cut(s)	535
SmiMI	CAYNNNNRTG	2 cut(s)	318, 507
SmlI	CTYRAG	1 cut(s)	731
SmoI	CTYRAG	1 cut(s)	731
Sse9I	AATT	4 cut(s)	62, 454, 684, 786
SsiI	CCGC	2 cut(s)	250, 892
SspMI	CTAG	2 cut(s)	384, 903
StyD4I	CCNGG	1 cut(s)	41
StyI	CCWWGG	2 cut(s)	355, 902
TaaI	ACNGT	4 cut(s)	465, 676, 723, 780
TaiI	ACGT	2 cut(s)	580, 947
TaqI	TCGA	6 cut(s)	15, 95, 129, 215, 372, 664
TaqII	GACCGA	1 cut(s)	353
TasI	AATT	4 cut(s)	62, 454, 684, 786
TfiI	GAWTC	4 cut(s)	232, 666, 751, 757
Tru1I	TTAA	2 cut(s)	351, 789
Tru9I	TTAA	2 cut(s)	351, 789
TscAI	CASTG	1 cut(s)	841
TseFI	GTSAC	1 cut(s)	832
TseI	GCWGC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	832
TspDTI	ATGAA	4 cut(s)	17, 491, 715, 933
TspGWI	ACGGA	1 cut(s)	421
TspRI	CASTG	1 cut(s)	841
Tth111I	GACNNNGTC	2 cut(s)	11, 641
VpaK11BI	GGWCC	1 cut(s)	535
XapI	RAATTY	1 cut(s)	454
XceI	RCATGY	1 cut(s)	532
XmaJI	CCTAGG	1 cut(s)	902
XmiI	GTMKAC	1 cut(s)	372
XspI	CTAG	2 cut(s)	384, 903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.