RchiOBHm_Chr1g0323531

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
10982325 .. 10983223
899 bp
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UTR
Exon/CDS
Intron
PRQ55343

Sequence Viewer

Length: 240 bp
ATGCCACAAATAGATGAACTGCTTGAGGAAGGTGAGAATTTTCTTGATGTGCTTTACCCATGTACCGAAAAGGAGACAGCAGCTCTTGGGGATTCCAACATGCAAAATCTGAAGCATAGAGATGTATTGCAACTTGAGAGGAAAGGATACTTAAGCTGTGATGTTCCCTACCTCAGGCTTTCAAAGCATATTGTTCTCTTTGCAATCCCCGATGGGAGGCAACAGGCTGGGTTAAAGTAA

Protein Analysis

79

Amino Acids

9.02

Weight (kDa)

5.0

Isoelectric Point (pI)

47.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1c_C2 PF20974 12 - 54 1.1e-06 tRNA synthetases class I (E and Q), anti-codon binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 37
AcuI CTGAAG 1 cut(s) 131
AfaI GTAC 1 cut(s) 64
AfiI CCNNNNNNNGG 2 cut(s) 174, 216
AflII CTTAAG 1 cut(s) 151
AgsI TTSAA 1 cut(s) 183
AluBI AGCT 2 cut(s) 83, 156
AluI AGCT 2 cut(s) 83, 156
Alw26I GTCTC 1 cut(s) 68
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 44
AxyI CCTNAGG 1 cut(s) 173
BaeI ACNNNNGTAYC 2 cut(s) 46, 79
BbvI GCAGC 1 cut(s) 92
BccI CCATC 1 cut(s) 206
BciVI GTATCC 1 cut(s) 140
BcoDI GTCTC 1 cut(s) 68
BfrI CTTAAG 1 cut(s) 151
BfuI GTATCC 1 cut(s) 140
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
BpuEI CTTGAG 2 cut(s) 44, 155
Bsc4I CCNNNNNNNGG 2 cut(s) 174, 216
Bse21I CCTNAGG 1 cut(s) 173
BseLI CCNNNNNNNGG 2 cut(s) 174, 216
BseMII CTCAG 1 cut(s) 187
BseXI GCAGC 1 cut(s) 92
BseYI CCCAGC 1 cut(s) 227
BslI CCNNNNNNNGG 2 cut(s) 174, 216
BsmAI GTCTC 1 cut(s) 68
BspCNI CTCAG 1 cut(s) 186
BspTI CTTAAG 1 cut(s) 151
BstAFI CTTAAG 1 cut(s) 151
BstDEI CTNAG 1 cut(s) 173
BstENI CCTNNNNNAGG 1 cut(s) 172
BstMAI GTCTC 1 cut(s) 68
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstNSI RCATGY 1 cut(s) 103
BstV1I GCAGC 1 cut(s) 92
Bsu36I CCTNAGG 1 cut(s) 173
BsuI GTATCC 1 cut(s) 140
Csp6I GTAC 1 cut(s) 63
CviAII CATG 2 cut(s) 60, 100
CviJI RGCY 4 cut(s) 83, 156, 178, 227
CviKI_1 RGCY 4 cut(s) 83, 156, 178, 227
CviQI GTAC 1 cut(s) 63
DdeI CTNAG 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 131
Eco81I CCTNAGG 1 cut(s) 173
EcoNI CCTNNNNNAGG 1 cut(s) 172
FaeI CATG 2 cut(s) 63, 103
FaiI YATR 4 cut(s) 61, 101, 117, 189
FatI CATG 2 cut(s) 59, 99
Fnu4HI GCNGC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 81
GsaI CCCAGC 1 cut(s) 231
Hin1II CATG 2 cut(s) 63, 103
HinfI GANTC 1 cut(s) 92
HphI GGTGA 1 cut(s) 44
Hpy188I TCNGA 1 cut(s) 111
Hpy188III TCNNGA 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 23
HpyCH4V TGCA 3 cut(s) 103, 130, 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
HpyF3I CTNAG 1 cut(s) 173
Hsp92II CATG 2 cut(s) 63, 103
LpnPI CCDG 3 cut(s) 160, 209, 213
Lsp1109I GCAGC 1 cut(s) 92
MluCI AATT 1 cut(s) 37
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 4 cut(s) 19, 132, 182, 210
MseI TTAA 2 cut(s) 152, 233
MslI CAYNNNNRTG 1 cut(s) 120
MspCI CTTAAG 1 cut(s) 151
MwoI GCNNNNNNNGC 1 cut(s) 184
NlaIII CATG 2 cut(s) 63, 103
NspI RCATGY 1 cut(s) 103
PfeI GAWTC 1 cut(s) 92
PkrI GCNGC 1 cut(s) 82
PspFI CCCAGC 1 cut(s) 227
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
RseI CAYNNNNRTG 1 cut(s) 120
SaqAI TTAA 2 cut(s) 152, 233
SatI GCNGC 1 cut(s) 81
SetI ASST 4 cut(s) 34, 85, 158, 174
SgeI CNNG 9 cut(s) 35, 56, 72, 98, 112, 146, 187, 221, 236
SmiMI CAYNNNNRTG 1 cut(s) 120
SmlI CTYRAG 3 cut(s) 23, 134, 151
SmoI CTYRAG 3 cut(s) 23, 134, 151
Sse9I AATT 1 cut(s) 37
TasI AATT 1 cut(s) 37
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 2 cut(s) 152, 233
Tru9I TTAA 2 cut(s) 152, 233
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 30
Vha464I CTTAAG 1 cut(s) 151
XagI CCTNNNNNAGG 1 cut(s) 172
XapI RAATTY 1 cut(s) 37
XceI RCATGY 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.