Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001659

Physical Location & Seq

Genomic Coordinates Reverse (-)

20077777 .. 20078939

Gene Structure 1163 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55953

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGAAGGACAAGGTCCATGCAGAAGTGTCTTCGTGGCGTGCCGGGAAAAAATGTTCAGCGAAATTGAAAGAGAACCCAGCCAGTCAGCAGTCCAAGGCTAAAGCAGGAACCACCCGAGGAACATTCGAGGTAGATCTACCGGAGGCTGAGGCTGGAAAGGTGAAGTTGAGGTTTGCGCCGGAACCAAGTGGTTATCTTCACATTGGGCACTCGAAAGCAGCTTTACTGAATCAGTATTTTGCTCAGCGCAATGAGTTTGTCGATAATCTTCTCAAAGATATTCAGACTTTGGGTATCAAGTACGAGGAGGTTACCTATACTTCAGATCACTTGGATGAGTTGATGGATATGACCGAGAAGCTGATTAACCAAGGTAAAGCATATGTCGACGATACACCTAGAGAAGAGATGCAAAAGCAACGGATGGATGGGATTGAGTCAAAGTGTAGAAACCACAGCAAAGACGAAAATTTGAAACTGTGGGAGGAGATGAAAGCAGGTTCAGAGAGGGATCTGCATTGTTGTGTTAGAGGGAAGCTGGACATGCAGGACCCTAATAAATCACTCAGAGATCCAATAGGGTCCAATTACAAGGTCTACCCAACTTATGATTTTGCTTGTCCATTTGTTGATTCCATTGAAGGTATAACTCATGCCCTTCGATCTAGTGAATACCATGATCGCAACGCCCAGTACTATAGGATTCAAGAGGATATGGGACTGAGAAAAGTCCATGTGTATGAGTTCAGTAGCTTGAACATGGTCTATACACTCCACAGCAAGCGGAAGCTTTTGTGGTTTGTTCAAAATGACAAGGTCAATGGATGGGATGATCCTCGATTCCCAACTGTTCAAGGAATCGTGCGTAGAGGTCTCAAAGTTGAAGCATTGATACAGTTCATTCTTGAGCAGGGGGCTTCAAAGAATCTGAATCTTATGGAATGGGATAAACTGTGTACTGTTGTAAATGATAATGACTATTCGTGCAATAAGTATTGCTTAATGTATGCGATTAACAGACTCGTAATGCATGCGATTGACAAACTCGTAATGCATGCGATTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003824 GO:0004812 GO:0004818 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006424 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko00970 ko01100 ko01110 ko01120 map00860 map00970 map01100 map01110 map01120

Pfam Domains

Protein Families

GST_C GST_C_3 tRNA-synt_1c tRNA-synt_1c_C

Protein Analysis

355

Amino Acids

41.0

Weight (kDa)

6.87

Isoelectric Point (pI)

34.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1c	PF00749	53 - 84	7.1e-12	tRNA synthetases class I (E and Q), catalytic domain
tRNA-synt_1c	PF00749	84 - 322	2.7e-61	tRNA synthetases class I (E and Q), catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26710
fragaria_vesca	FvH4_1g07040 FvH4_3g18420 FvH4_5g29940 FvH4_5g29940 FvH4_6g08750
malus_domestica	MD04G1184100.v1.1 MD12G1197300.v1.1
prunus_persica	Prupe.6G302600_v2.0.a1 Prupe.6G302600_v2.0.a1
pyrus_communis	pycom04g16310
rosa_chinensis	RchiOBHm_Chr1g0323481 RchiOBHm_Chr1g0323531 RchiOBHm_Chr1g0330311 RchiOBHm_Chr1g0330321 RchiOBHm_Chr1g0330421 RchiOBHm_Chr1g0330431 RchiOBHm_Chr3g0459011
rosa_laevigata	RLG00000025126 RLG00000029811 RLG00000030323 RLG00000030332
rosa_multiflora	Rmu_co8493977.1_g000001 Rmu_sc0002634.1_g000044 Rmu_sc0004343.1_g000022 Rmu_sc0007290.1_g000009 Rmu_sc0007290.1_g000010
rosa_roxburghii	Rroxscaffold_4G00319950 Rroxscaffold_4G00319960 Rroxscaffold_6G00420600
rosa_rugosa	Rorug01G0088900 Rorug03G0032500 Rorug05G0414800
rosa_samantha	Rh1AG106700 Rh1AG106800 Rh1CG056600 Rh1CG057900 Rh1CG102700 Rh1CG102800 Rh1DG060600 Rh1DG061700 Rh1DG110600 Rh3BG093600 Rh5DG502200 Rh6BG457000 Rh6BG457100
rosa_wichuraiana	Rw1G008430 Rw1G008550 Rw3G007770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	488
AccI	GTMKAC	2 cut(s)	387, 597
AciI	CCGC	1 cut(s)	784
AclWI	GGATC	3 cut(s)	519, 566, 827
AcsI	RAATTY	1 cut(s)	469
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	3 cut(s)	302, 695, 958
AgsI	TTSAA	9 cut(s)	67, 475, 641, 707, 757, 806, 854, 884, 921
AloI	GAACNNNNNNTCC	2 cut(s)	37, 69
AluBI	AGCT	5 cut(s)	221, 361, 538, 753, 790
AluI	AGCT	5 cut(s)	221, 361, 538, 753, 790
Alw26I	GTCTC	1 cut(s)	878
AlwI	GGATC	3 cut(s)	519, 566, 827
Ama87I	CYCGRG	1 cut(s)	114
ApeKI	GCWGC	1 cut(s)	218
ApoI	RAATTY	1 cut(s)	469
AspLEI	GCGC	2 cut(s)	178, 249
AspS9I	GGNCC	3 cut(s)	13, 550, 582
AsuC2I	CCSGG	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	172
AvaI	CYCGRG	1 cut(s)	114
AvaII	GGWCC	3 cut(s)	13, 550, 582
BaeGI	GKGCMC	1 cut(s)	210
BarI	GAAGNNNNNNTAC	2 cut(s)	876, 908
BbsI	GAAGAC	1 cut(s)	21
BbvCI	CCTCAGC	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	230
BccI	CCATC	4 cut(s)	337, 418, 422, 819
BcnI	CCSGG	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	878
BfaI	CTAG	3 cut(s)	399, 666, 1066
BfmI	CTRYAG	1 cut(s)	697
BfuAI	ACCTGC	1 cut(s)	488
BglII	AGATCT	1 cut(s)	133
BisI	GCNGC	1 cut(s)	219
BlpI	GCTNAGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	220
BmcAI	AGTACT	1 cut(s)	695
Bme1390I	CCNGG	1 cut(s)	43
Bme18I	GGWCC	3 cut(s)	13, 550, 582
BmeT110I	CYCGRG	1 cut(s)	114
BmgT120I	GGNCC	3 cut(s)	13, 550, 582
BmiI	GGNNCC	4 cut(s)	109, 183, 552, 583
BmrFI	CCNGG	1 cut(s)	43
BmrI	ACTGGG	1 cut(s)	685
BmsI	GCATC	1 cut(s)	399
BmuI	ACTGGG	1 cut(s)	685
BpiI	GAAGAC	1 cut(s)	21
Bpu10I	CCTNAGC	1 cut(s)	147
Bpu1102I	GCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	926
BpuMI	CCSGG	1 cut(s)	43
BsaI	GGTCTC	1 cut(s)	878
BsaJI	CCNNGG	3 cut(s)	93, 115, 370
BsaWI	WCCGGW	1 cut(s)	139
Bse1I	ACTGG	2 cut(s)	81, 691
Bse3DI	GCAATG	1 cut(s)	256
BseDI	CCNNGG	3 cut(s)	93, 115, 370
BseGI	GGATG	5 cut(s)	340, 429, 433, 830, 835
BseMI	GCAATG	1 cut(s)	256
BseMII	CTCAG	4 cut(s)	138, 257, 580, 713
BseNI	ACTGG	2 cut(s)	81, 691
BseRI	GAGGAG	2 cut(s)	320, 500
BseSI	GKGCMC	1 cut(s)	210
BseXI	GCAGC	1 cut(s)	230
BseYI	CCCAGC	1 cut(s)	76
BsiHKCI	CYCGRG	1 cut(s)	114
BsiSI	CCGG	3 cut(s)	42, 140, 179
BslFI	GGGAC	1 cut(s)	732
BsmAI	GTCTC	1 cut(s)	878
BsmFI	GGGAC	1 cut(s)	732
Bso31I	GGTCTC	1 cut(s)	878
BsoBI	CYCGRG	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	7 cut(s)	133, 325, 511, 571, 662, 679, 832
Bsp1720I	GCTNAGC	1 cut(s)	243
BspACI	CCGC	1 cut(s)	784
BspCNI	CTCAG	4 cut(s)	139, 256, 579, 714
BspLI	GGNNCC	4 cut(s)	109, 183, 552, 583
BspMI	ACCTGC	1 cut(s)	488
BspPI	GGATC	3 cut(s)	519, 566, 827
BspTNI	GGTCTC	1 cut(s)	878
BsrDI	GCAATG	1 cut(s)	256
BsrI	ACTGG	2 cut(s)	81, 691
BssECI	CCNNGG	3 cut(s)	93, 115, 370
BssMI	GATC	7 cut(s)	133, 325, 511, 571, 662, 679, 832
BssT1I	CCWWGG	2 cut(s)	93, 370
Bst4CI	ACNGT	5 cut(s)	480, 850, 897, 954, 961
Bst6I	CTCTTC	1 cut(s)	399
BstC8I	GCNNGC	4 cut(s)	39, 782, 1032, 1056
BstDEI	CTNAG	4 cut(s)	147, 243, 566, 722
BstEII	GGTNACC	1 cut(s)	310
BstF5I	GGATG	5 cut(s)	340, 429, 433, 830, 835
BstHHI	GCGC	2 cut(s)	178, 249
BstKTI	GATC	7 cut(s)	136, 328, 514, 574, 665, 682, 835
BstMAI	GTCTC	1 cut(s)	878
BstMBI	GATC	7 cut(s)	133, 325, 511, 571, 662, 679, 832
BstMWI	GCNNNNNNNGC	1 cut(s)	544
BstNSI	RCATGY	3 cut(s)	547, 1034, 1058
BstPI	GGTNACC	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	41
BstSFI	CTRYAG	1 cut(s)	697
BstSLI	GKGCMC	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	230
BstV2I	GAAGAC	1 cut(s)	21
BstX2I	RGATCY	3 cut(s)	133, 511, 571
BstYI	RGATCY	3 cut(s)	133, 511, 571
BtsCI	GGATG	5 cut(s)	340, 429, 433, 830, 835
BveI	ACCTGC	1 cut(s)	488
Cac8I	GCNNGC	4 cut(s)	39, 782, 1032, 1056
CfoI	GCGC	2 cut(s)	178, 249
Cfr13I	GGNCC	3 cut(s)	13, 550, 582
Csp6I	GTAC	3 cut(s)	301, 694, 957
CviAII	CATG	8 cut(s)	17, 544, 653, 677, 734, 760, 1031, 1055
CviQI	GTAC	3 cut(s)	301, 694, 957
DdeI	CTNAG	4 cut(s)	147, 243, 566, 722
DpnI	GATC	7 cut(s)	135, 327, 513, 573, 664, 681, 834
DpnII	GATC	7 cut(s)	133, 325, 511, 571, 662, 679, 832
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
Eco130I	CCWWGG	2 cut(s)	93, 370
Eco31I	GGTCTC	1 cut(s)	878
Eco47I	GGWCC	3 cut(s)	13, 550, 582
Eco57I	CTGAAG	1 cut(s)	306
Eco88I	CYCGRG	1 cut(s)	114
Eco91I	GGTNACC	1 cut(s)	310
EcoO109I	RGGNCCY	1 cut(s)	550
EcoO65I	GGTNACC	1 cut(s)	310
EcoT14I	CCWWGG	2 cut(s)	93, 370
EcoT22I	ATGCAT	2 cut(s)	1032, 1056
ErhI	CCWWGG	2 cut(s)	93, 370
FaeI	CATG	8 cut(s)	20, 547, 656, 680, 737, 763, 1034, 1058
FalI	AAGNNNNNCTT	2 cut(s)	983, 1015
FaqI	GGGAC	1 cut(s)	732
FatI	CATG	8 cut(s)	16, 543, 652, 676, 733, 759, 1030, 1054
FauNDI	CATATG	1 cut(s)	382
FblI	GTMKAC	2 cut(s)	387, 597
Fnu4HI	GCNGC	1 cut(s)	219
FokI	GGATG	5 cut(s)	347, 436, 440, 837, 842
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	3 cut(s)	399, 666, 1066
GlaI	GCGC	2 cut(s)	177, 248
GluI	GCNGC	1 cut(s)	219
GsaI	CCCAGC	1 cut(s)	80
HapII	CCGG	3 cut(s)	42, 140, 179
HhaI	GCGC	2 cut(s)	178, 249
Hin1II	CATG	8 cut(s)	20, 547, 656, 680, 737, 763, 1034, 1058
Hin6I	GCGC	2 cut(s)	176, 247
HinP1I	GCGC	2 cut(s)	176, 247
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HindIII	AAGCTT	1 cut(s)	788
HinfI	GANTC	9 cut(s)	229, 437, 632, 703, 840, 858, 925, 931, 1020
HpaII	CCGG	3 cut(s)	42, 140, 179
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	3 cut(s)	388, 598, 957
Hpy188I	TCNGA	5 cut(s)	285, 325, 505, 569, 930
Hpy188III	TCNNGA	2 cut(s)	707, 905
Hpy8I	GTNNAC	3 cut(s)	388, 598, 957
Hpy99I	CGWCG	1 cut(s)	392
HpyAV	CCTTC	2 cut(s)	635, 668
HpyCH4III	ACNGT	5 cut(s)	480, 850, 897, 954, 961
HpyCH4V	TGCA	7 cut(s)	20, 412, 517, 547, 987, 1030, 1054
HpyF10VI	GCNNNNNNNGC	1 cut(s)	544
HpyF3I	CTNAG	4 cut(s)	147, 243, 566, 722
Hsp92II	CATG	8 cut(s)	20, 547, 656, 680, 737, 763, 1034, 1058
HspAI	GCGC	2 cut(s)	176, 247
Kzo9I	GATC	7 cut(s)	133, 325, 511, 571, 662, 679, 832
Lsp1109I	GCAGC	1 cut(s)	230
LweI	GCATC	1 cut(s)	399
MaeI	CTAG	3 cut(s)	399, 666, 1066
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	7 cut(s)	135, 327, 513, 573, 664, 681, 834
MboI	GATC	7 cut(s)	133, 325, 511, 571, 662, 679, 832
MboII	GAAGA	4 cut(s)	21, 188, 260, 416
MflI	RGATCY	3 cut(s)	133, 511, 571
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	3 cut(s)	62, 469, 586
MlyI	GAGTC	2 cut(s)	446, 1014
Mph1103I	ATGCAT	2 cut(s)	1032, 1056
MseI	TTAA	3 cut(s)	366, 1001, 1014
MslI	CAYNNNNRTG	3 cut(s)	333, 522, 738
MspI	CCGG	3 cut(s)	42, 140, 179
MspR9I	CCNGG	1 cut(s)	43
MwoI	GCNNNNNNNGC	1 cut(s)	544
NciI	CCSGG	1 cut(s)	43
NdeI	CATATG	1 cut(s)	382
NdeII	GATC	7 cut(s)	133, 325, 511, 571, 662, 679, 832
NlaIII	CATG	8 cut(s)	20, 547, 656, 680, 737, 763, 1034, 1058
NlaIV	GGNNCC	4 cut(s)	109, 183, 552, 583
NsiI	ATGCAT	2 cut(s)	1032, 1056
NspI	RCATGY	3 cut(s)	547, 1034, 1058
PaeI	GCATGC	2 cut(s)	1034, 1058
PfeI	GAWTC	7 cut(s)	229, 632, 703, 840, 858, 925, 931
PflFI	GACNNNGTC	2 cut(s)	11, 815
PkrI	GCNGC	1 cut(s)	220
PleI	GAGTC	2 cut(s)	445, 1014
PpsI	GAGTC	2 cut(s)	445, 1014
PpuMI	RGGWCCY	1 cut(s)	550
Psp5II	RGGWCCY	1 cut(s)	550
PspEI	GGTNACC	1 cut(s)	310
PspFI	CCCAGC	1 cut(s)	76
PspN4I	GGNNCC	4 cut(s)	109, 183, 552, 583
PspPI	GGNCC	3 cut(s)	13, 550, 582
PspPPI	RGGWCCY	1 cut(s)	550
PsuI	RGATCY	3 cut(s)	133, 511, 571
PsyI	GACNNNGTC	2 cut(s)	11, 815
RsaI	GTAC	3 cut(s)	302, 695, 958
RsaNI	GTAC	3 cut(s)	301, 694, 957
RseI	CAYNNNNRTG	3 cut(s)	333, 522, 738
SalI	GTCGAC	1 cut(s)	386
SaqAI	TTAA	3 cut(s)	366, 1001, 1014
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	7 cut(s)	133, 325, 511, 571, 662, 679, 832
Sau96I	GGNCC	3 cut(s)	13, 550, 582
ScaI	AGTACT	1 cut(s)	695
SchI	GAGTC	2 cut(s)	446, 1014
ScrFI	CCNGG	1 cut(s)	43
SduI	GDGCHC	1 cut(s)	210
SfaNI	GCATC	1 cut(s)	399
SfcI	CTRYAG	1 cut(s)	697
SinI	GGWCC	3 cut(s)	13, 550, 582
SmiMI	CAYNNNNRTG	3 cut(s)	333, 522, 738
SmlI	CTYRAG	1 cut(s)	905
SmoI	CTYRAG	1 cut(s)	905
SphI	GCATGC	2 cut(s)	1034, 1058
Sse9I	AATT	3 cut(s)	62, 469, 586
SsiI	CCGC	1 cut(s)	784
SspMI	CTAG	3 cut(s)	399, 666, 1066
StyD4I	CCNGG	1 cut(s)	41
StyI	CCWWGG	2 cut(s)	93, 370
TaaI	ACNGT	5 cut(s)	480, 850, 897, 954, 961
TaqI	TCGA	6 cut(s)	126, 212, 261, 387, 661, 838
TaqII	GACCGA	1 cut(s)	368
TasI	AATT	3 cut(s)	62, 469, 586
TatI	WGTACW	2 cut(s)	693, 956
TfiI	GAWTC	7 cut(s)	229, 632, 703, 840, 858, 925, 931
Tru1I	TTAA	3 cut(s)	366, 1001, 1014
Tru9I	TTAA	3 cut(s)	366, 1001, 1014
TseI	GCWGC	1 cut(s)	218
TspDTI	ATGAA	3 cut(s)	17, 506, 889
TspGWI	ACGGA	1 cut(s)	436
Tth111I	GACNNNGTC	2 cut(s)	11, 815
VpaK11BI	GGWCC	3 cut(s)	13, 550, 582
XapI	RAATTY	1 cut(s)	469
XceI	RCATGY	3 cut(s)	547, 1034, 1058
XmiI	GTMKAC	2 cut(s)	387, 597
XspI	CTAG	3 cut(s)	399, 666, 1066
ZrmI	AGTACT	1 cut(s)	695
Zsp2I	ATGCAT	2 cut(s)	1032, 1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.