Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001659

Physical Location & Seq

Genomic Coordinates Reverse (-)

20152436 .. 20152924

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55962

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGATTGGGGGAATGCCATTGTTAAGAACATTGACAAAGACCAAGATGGAAATCTTGCGCTCAAAGGGGTTTTGCATCTTGAAGGATCTGTGAAAACCACCAAACTGAAGCTTACCTGGCTGCCTGAAATAGATGAACTGGTTAAGATCTCGTCGATGGAGTTTGATTATCTGATAACAAAGAAGAAGCTTGAGGAAGGCGAGGATTTCGTTGATGTGCTTAACCCATGTACCGAAAAGGAGACAGCAGCCCTTCAGGGGTCGTCAACGGGCCGGGTCGGGCCGGGCCGGGCCCATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003824 GO:0004812 GO:0004818 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006424 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko00970 ko01100 ko01110 ko01120 map00860 map00970 map01100 map01110 map01120

Pfam Domains

Protein Families

GST_C GST_C_3 tRNA-synt_1c tRNA-synt_1c_C

Protein Analysis

100

Amino Acids

11.01

Weight (kDa)

5.12

Isoelectric Point (pI)

22.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26710
fragaria_vesca	FvH4_1g07040 FvH4_3g18420 FvH4_5g29940 FvH4_5g29940 FvH4_6g08750
malus_domestica	MD04G1184100.v1.1 MD12G1197300.v1.1
prunus_persica	Prupe.6G302600_v2.0.a1 Prupe.6G302600_v2.0.a1
pyrus_communis	pycom04g16310
rosa_chinensis	RchiOBHm_Chr1g0323481 RchiOBHm_Chr1g0323531 RchiOBHm_Chr1g0330311 RchiOBHm_Chr1g0330321 RchiOBHm_Chr1g0330421 RchiOBHm_Chr1g0330431 RchiOBHm_Chr3g0459011
rosa_laevigata	RLG00000025126 RLG00000029811 RLG00000030323 RLG00000030332
rosa_multiflora	Rmu_co8493977.1_g000001 Rmu_sc0002634.1_g000044 Rmu_sc0004343.1_g000022 Rmu_sc0007290.1_g000009 Rmu_sc0007290.1_g000010
rosa_roxburghii	Rroxscaffold_4G00319950 Rroxscaffold_4G00319960 Rroxscaffold_6G00420600
rosa_rugosa	Rorug01G0088900 Rorug03G0032500 Rorug05G0414800
rosa_samantha	Rh1AG106700 Rh1AG106800 Rh1CG056600 Rh1CG057900 Rh1CG102700 Rh1CG102800 Rh1DG060600 Rh1DG061700 Rh1DG110600 Rh3BG093600 Rh5DG502200 Rh6BG457000 Rh6BG457100
rosa_wichuraiana	Rw1G008430 Rw1G008550 Rw3G007770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	94
AcuI	CTGAAG	2 cut(s)	128, 239
AfaI	GTAC	1 cut(s)	232
AfiI	CCNNNNNNNGG	1 cut(s)	258
AgsI	TTSAA	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	116
AluBI	AGCT	2 cut(s)	112, 190
AluI	AGCT	2 cut(s)	112, 190
Alw26I	GTCTC	1 cut(s)	236
AlwI	GGATC	1 cut(s)	94
AoxI	GGCC	4 cut(s)	271, 281, 286, 291
ApaI	GGGCCC	1 cut(s)	295
ApeKI	GCWGC	2 cut(s)	121, 248
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	5 cut(s)	271, 281, 286, 291, 292
AsuC2I	CCSGG	3 cut(s)	275, 285, 290
BaeGI	GKGCMC	1 cut(s)	295
BaeI	ACNNNNGTAYC	2 cut(s)	214, 247
BanII	GRGCYC	1 cut(s)	295
BbvI	GCAGC	2 cut(s)	108, 260
BccI	CCATC	2 cut(s)	41, 151
BciT130I	CCWGG	1 cut(s)	118
BcnI	CCSGG	3 cut(s)	275, 285, 290
BcoDI	GTCTC	1 cut(s)	236
BglII	AGATCT	1 cut(s)	147
BisI	GCNGC	2 cut(s)	122, 249
BlsI	GCNGC	2 cut(s)	123, 250
Bme1390I	CCNGG	4 cut(s)	118, 275, 285, 290
BmgT120I	GGNCC	5 cut(s)	271, 281, 286, 291, 292
BmiI	GGNNCC	1 cut(s)	293
BmrFI	CCNGG	4 cut(s)	118, 275, 285, 290
BmsI	GCATC	1 cut(s)	85
BpuEI	CTTGAG	1 cut(s)	212
BpuMI	CCSGG	3 cut(s)	275, 285, 290
BsaBI	GATNNNNATC	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	1 cut(s)	258
Bse1I	ACTGG	1 cut(s)	144
Bse8I	GATNNNNATC	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	118
BseJI	GATNNNNATC	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	144
BseSI	GKGCMC	1 cut(s)	295
BseXI	GCAGC	2 cut(s)	108, 260
BshFI	GGCC	4 cut(s)	273, 283, 288, 293
BsiSI	CCGG	3 cut(s)	274, 284, 289
BslI	CCNNNNNNNGG	1 cut(s)	258
BsmAI	GTCTC	1 cut(s)	236
BsmI	GAATGC	1 cut(s)	19
BsnI	GGCC	4 cut(s)	273, 283, 288, 293
Bsp120I	GGGCCC	1 cut(s)	291
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	2 cut(s)	86, 147
BspANI	GGCC	4 cut(s)	273, 283, 288, 293
BspLI	GGNNCC	1 cut(s)	293
BspPI	GGATC	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	144
BssMI	GATC	2 cut(s)	86, 147
Bst2UI	CCWGG	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	2 cut(s)	89, 150
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	2 cut(s)	86, 147
BstMWI	GCNNNNNNNGC	1 cut(s)	118
BstNI	CCWGG	1 cut(s)	118
BstSCI	CCNGG	4 cut(s)	116, 273, 283, 288
BstSLI	GKGCMC	1 cut(s)	295
BstV1I	GCAGC	2 cut(s)	108, 260
BstX2I	RGATCY	2 cut(s)	86, 147
BstYI	RGATCY	2 cut(s)	86, 147
BsuRI	GGCC	4 cut(s)	273, 283, 288, 293
CfoI	GCGC	1 cut(s)	61
Cfr13I	GGNCC	5 cut(s)	271, 281, 286, 291, 292
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	1 cut(s)	228
CviJI	RGCY	8 cut(s)	112, 121, 190, 251, 273, 283, 288, 293
CviKI_1	RGCY	8 cut(s)	112, 121, 190, 251, 273, 283, 288, 293
CviQI	GTAC	1 cut(s)	231
DpnI	GATC	2 cut(s)	88, 149
DpnII	GATC	2 cut(s)	86, 147
Eco24I	GRGCYC	1 cut(s)	295
Eco57I	CTGAAG	2 cut(s)	128, 239
EcoRII	CCWGG	1 cut(s)	116
EcoT38I	GRGCYC	1 cut(s)	295
FaeI	CATG	1 cut(s)	231
FaiI	YATR	2 cut(s)	229, 301
FatI	CATG	1 cut(s)	227
Fnu4HI	GCNGC	2 cut(s)	122, 249
FriOI	GRGCYC	1 cut(s)	295
Fsp4HI	GCNGC	2 cut(s)	122, 249
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	2 cut(s)	122, 249
HaeIII	GGCC	4 cut(s)	273, 283, 288, 293
HapII	CCGG	3 cut(s)	274, 284, 289
HhaI	GCGC	1 cut(s)	61
Hin1II	CATG	1 cut(s)	231
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HincII	GTYRAC	1 cut(s)	267
HindII	GTYRAC	1 cut(s)	267
HindIII	AAGCTT	2 cut(s)	110, 188
HpaII	CCGG	3 cut(s)	274, 284, 289
Hpy166II	GTNNAC	1 cut(s)	267
Hpy188I	TCNGA	1 cut(s)	174
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	1 cut(s)	267
Hpy99I	CGWCG	1 cut(s)	157
HpyAV	CCTTC	3 cut(s)	77, 191, 263
HpyCH4V	TGCA	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	1 cut(s)	118
Hsp92II	CATG	1 cut(s)	231
HspAI	GCGC	1 cut(s)	59
Kzo9I	GATC	2 cut(s)	86, 147
LpnPI	CCDG	7 cut(s)	103, 125, 130, 138, 242, 287, 297
Lsp1109I	GCAGC	2 cut(s)	108, 260
LweI	GCATC	1 cut(s)	85
MalI	GATC	2 cut(s)	88, 149
MboI	GATC	2 cut(s)	86, 147
MboII	GAAGA	1 cut(s)	196
MflI	RGATCY	2 cut(s)	86, 147
MhlI	GDGCHC	1 cut(s)	295
MnlI	CCTC	2 cut(s)	187, 196
MseI	TTAA	3 cut(s)	24, 144, 222
MspI	CCGG	3 cut(s)	274, 284, 289
MspR9I	CCNGG	4 cut(s)	118, 275, 285, 290
Mva1269I	GAATGC	1 cut(s)	19
MvaI	CCWGG	1 cut(s)	118
MwoI	GCNNNNNNNGC	1 cut(s)	118
NciI	CCSGG	3 cut(s)	275, 285, 290
NdeII	GATC	2 cut(s)	86, 147
NlaIII	CATG	1 cut(s)	231
NlaIV	GGNNCC	1 cut(s)	293
PctI	GAATGC	1 cut(s)	19
PkrI	GCNGC	2 cut(s)	123, 250
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	293
PspOMI	GGGCCC	1 cut(s)	291
PspPI	GGNCC	5 cut(s)	271, 281, 286, 291, 292
PsuI	RGATCY	2 cut(s)	86, 147
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
SaqAI	TTAA	3 cut(s)	24, 144, 222
SatI	GCNGC	2 cut(s)	122, 249
Sau3AI	GATC	2 cut(s)	86, 147
Sau96I	GGNCC	5 cut(s)	271, 281, 286, 291, 292
ScrFI	CCNGG	4 cut(s)	118, 275, 285, 290
SduI	GDGCHC	1 cut(s)	295
SetI	ASST	3 cut(s)	114, 119, 192
SfaNI	GCATC	1 cut(s)	85
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
StyD4I	CCNGG	4 cut(s)	116, 273, 283, 288
TaqI	TCGA	1 cut(s)	155
Tru1I	TTAA	3 cut(s)	24, 144, 222
Tru9I	TTAA	3 cut(s)	24, 144, 222
TseI	GCWGC	2 cut(s)	121, 248
TspDTI	ATGAA	2 cut(s)	150, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.