Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001659

Physical Location & Seq

Genomic Coordinates Forward (+)

66897434 .. 66897733

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG457000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGAAAAAACAACGGATGGATGGGATTGAGTCAAAGTGTAGAAACCACAGCAAAGAGGAGAATTGGAATTTGTGGGAGGAGATGAAAGCGGGTTCAGAGAGGGGTCTGCGGTGTTGTGTTAGAGGGAAGCTGGACATGCAGGACCCTAATAAATCGCTCAGAGATCCAGTTTATTATCGTTGCAATCCAAAGTCACATCATAGGAAAGGCTCCAAGTACAAGGTCTACCCAACTTATGATTTTGCTTGTCCATTTGTTGATTCCGTTGAAGGTATAACTCATGCCCTTCGATCTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003824 GO:0004812 GO:0004818 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006424 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko00970 ko01100 ko01110 ko01120 map00860 map00970 map01100 map01110 map01120

Pfam Domains

Protein Families

GST_C GST_C_3 tRNA-synt_1c tRNA-synt_1c_C

Protein Analysis

99

Amino Acids

11.64

Weight (kDa)

9.3

Isoelectric Point (pI)

50.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1c	PF00749	1 - 98	5.4e-26	tRNA synthetases class I (E and Q), catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26710
fragaria_vesca	FvH4_1g07040 FvH4_3g18420 FvH4_5g29940 FvH4_5g29940 FvH4_6g08750
malus_domestica	MD04G1184100.v1.1 MD12G1197300.v1.1
prunus_persica	Prupe.6G302600_v2.0.a1 Prupe.6G302600_v2.0.a1
pyrus_communis	pycom04g16310
rosa_chinensis	RchiOBHm_Chr1g0323481 RchiOBHm_Chr1g0323531 RchiOBHm_Chr1g0330311 RchiOBHm_Chr1g0330321 RchiOBHm_Chr1g0330421 RchiOBHm_Chr1g0330431 RchiOBHm_Chr3g0459011
rosa_laevigata	RLG00000025126 RLG00000029811 RLG00000030323 RLG00000030332
rosa_multiflora	Rmu_co8493977.1_g000001 Rmu_sc0002634.1_g000044 Rmu_sc0004343.1_g000022 Rmu_sc0007290.1_g000009 Rmu_sc0007290.1_g000010
rosa_roxburghii	Rroxscaffold_4G00319950 Rroxscaffold_4G00319960 Rroxscaffold_6G00420600
rosa_rugosa	Rorug01G0088900 Rorug03G0032500 Rorug05G0414800
rosa_samantha	Rh1AG106700 Rh1AG106800 Rh1CG056600 Rh1CG057900 Rh1CG102700 Rh1CG102800 Rh1DG060600 Rh1DG061700 Rh1DG110600 Rh3BG093600 Rh5DG502200 Rh6BG457000 Rh6BG457100
rosa_wichuraiana	Rw1G008430 Rw1G008550 Rw3G007770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	225
AciI	CCGC	2 cut(s)	89, 109
AclWI	GGATC	1 cut(s)	158
AcsI	RAATTY	1 cut(s)	67
AfaI	GTAC	1 cut(s)	218
AgsI	TTSAA	1 cut(s)	269
AluBI	AGCT	1 cut(s)	130
AluI	AGCT	1 cut(s)	130
AlwI	GGATC	1 cut(s)	158
ApoI	RAATTY	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	142
BccI	CCATC	2 cut(s)	10, 14
BfaI	CTAG	1 cut(s)	294
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	2 cut(s)	144, 211
Bse1I	ACTGG	1 cut(s)	167
BseGI	GGATG	2 cut(s)	21, 25
BseMII	CTCAG	1 cut(s)	172
BseNI	ACTGG	1 cut(s)	167
BseRI	GAGGAG	2 cut(s)	71, 92
Bsp143I	GATC	2 cut(s)	163, 290
BspACI	CCGC	2 cut(s)	89, 109
BspCNI	CTCAG	1 cut(s)	171
BspLI	GGNNCC	2 cut(s)	144, 211
BspPI	GGATC	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	167
BssMI	GATC	2 cut(s)	163, 290
BstDEI	CTNAG	1 cut(s)	158
BstF5I	GGATG	2 cut(s)	21, 25
BstKTI	GATC	2 cut(s)	166, 293
BstMBI	GATC	2 cut(s)	163, 290
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstNSI	RCATGY	1 cut(s)	139
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BtsCI	GGATG	2 cut(s)	21, 25
Cfr13I	GGNCC	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	2 cut(s)	136, 281
CviJI	RGCY	2 cut(s)	130, 210
CviKI_1	RGCY	2 cut(s)	130, 210
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	1 cut(s)	158
DpnI	GATC	2 cut(s)	165, 292
DpnII	GATC	2 cut(s)	163, 290
Eco47I	GGWCC	1 cut(s)	142
EcoO109I	RGGNCCY	1 cut(s)	142
FaeI	CATG	2 cut(s)	139, 284
FaiI	YATR	5 cut(s)	137, 201, 237, 275, 282
FatI	CATG	2 cut(s)	135, 280
FauI	CCCGC	1 cut(s)	82
FblI	GTMKAC	1 cut(s)	225
FokI	GGATG	2 cut(s)	28, 32
FspBI	CTAG	1 cut(s)	294
Hin1II	CATG	2 cut(s)	139, 284
HinfI	GANTC	2 cut(s)	29, 260
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	2 cut(s)	97, 161
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	2 cut(s)	263, 296
HpyCH4V	TGCA	2 cut(s)	139, 183
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
HpyF3I	CTNAG	1 cut(s)	158
Hsp92II	CATG	2 cut(s)	139, 284
Kzo9I	GATC	2 cut(s)	163, 290
LmnI	GCTCC	1 cut(s)	215
LpnPI	CCDG	3 cut(s)	116, 125, 180
MaeI	CTAG	1 cut(s)	294
MaeIII	GTNAC	1 cut(s)	192
MalI	GATC	2 cut(s)	165, 292
MboI	GATC	2 cut(s)	163, 290
MflI	RGATCY	1 cut(s)	163
MluCI	AATT	2 cut(s)	61, 67
MlyI	GAGTC	1 cut(s)	38
MnlI	CCTC	4 cut(s)	49, 70, 93, 116
MseI	TTAA	1 cut(s)	298
MwoI	GCNNNNNNNGC	1 cut(s)	136
NdeII	GATC	2 cut(s)	163, 290
NlaIII	CATG	2 cut(s)	139, 284
NlaIV	GGNNCC	2 cut(s)	144, 211
NmuCI	GTSAC	1 cut(s)	192
NspI	RCATGY	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	260
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PpuMI	RGGWCCY	1 cut(s)	142
Psp5II	RGGWCCY	1 cut(s)	142
PspN4I	GGNNCC	2 cut(s)	144, 211
PspPI	GGNCC	1 cut(s)	142
PspPPI	RGGWCCY	1 cut(s)	142
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SaqAI	TTAA	1 cut(s)	298
Sau3AI	GATC	2 cut(s)	163, 290
Sau96I	GGNCC	1 cut(s)	142
SchI	GAGTC	1 cut(s)	38
SetI	ASST	3 cut(s)	132, 225, 274
SgeI	CNNG	9 cut(s)	102, 143, 148, 152, 179, 226, 232, 258, 293
SinI	GGWCC	1 cut(s)	142
Sse9I	AATT	2 cut(s)	61, 67
SsiI	CCGC	2 cut(s)	89, 109
SspMI	CTAG	1 cut(s)	294
TaqI	TCGA	1 cut(s)	289
TasI	AATT	2 cut(s)	61, 67
TatI	WGTACW	1 cut(s)	216
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	1 cut(s)	298
Tru9I	TTAA	1 cut(s)	298
TseFI	GTSAC	1 cut(s)	192
Tsp45I	GTSAC	1 cut(s)	192
TspDTI	ATGAA	2 cut(s)	17, 98
TspGWI	ACGGA	2 cut(s)	28, 253
VpaK11BI	GGWCC	1 cut(s)	142
XapI	RAATTY	1 cut(s)	67
XceI	RCATGY	1 cut(s)	139
XmiI	GTMKAC	1 cut(s)	225
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.