Rmu_sc0008223.1_g000008

Chloroplastic group IIA intron splicing facilitator CRS1

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008223.1
Physical Location & Seq
Reverse (-)
19551 .. 23100
3550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008223.1_g000008.1.cds

Sequence Viewer

Length: 1128 bp
atggccttcgcaaccgccaaaatttccgaaatgccactcagaaactcactcccgctcacctctcactccccttcctctctcaacctcctcttctcgtccccaaaactgtcatttcacatcctcaagcccttctctgctctcagaaccaccgagcacggcggcaacccgaacgcgaggccgtcgccgcacaagtccaagccctcgtcgtcctcctccaccgcgccgtggctgaataagtggccgtctcgcggtgctccctcggagttgccccgccataaggtcaacgatagagtcaaggagtccaagggcggtggagagaagccgagtaatggcgctaggtacgtggacaaggacaaaggccagagcgcgatagagaggatcgtgttccggttgcggaacctggggttaggcgacgaagacgaggaggaggagagcggtgatggtgttgaattggacggtccggattcaatgccggcggcgagcggagaggagaagctcggcgatttgctgcagcgggagtgggtccggccggactatatattggtggaggagaagggcgacgatgacgtggcgctgccgtgggagaaggaggaggaggaggaggaattgagtgaggatgaggaggtgaaggggctgaggagagctcggaggtcgaaggcgccgagcttggctgagctgacgattgaggatgaggagctgaggcgattgaggaggttgggaatgttcctgagggagaggatcagtgtgccgaaagccgggattacgcaggctgtgctggagaagattcatgataagtggaggaaggaggagctggtgaggctcaagtttcatgaggttttggctcatgatatgaagactgctcatgagattgttgaggttcgttcagttcttgaattttcgtctacattttgcaattttctatattttcgccatgcttcatgtgagatgtatgacatttctcaaggtctggccaattttgttcgaataaatagagatattctccgtacctatgcccatgatgatgtcagtgtcgcatcttggttaattgggcttgatgttaaacatcttaatgtcgccaagttttgctactcctcttggacagcaggagccatttgtgctggtgtatga

Protein Analysis

375

Amino Acids

42.26

Weight (kDa)

5.91

Isoelectric Point (pI)

64.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 658
AccBSI CCGCTC 3 cut(s) 55, 435, 483
AccI GTMKAC 1 cut(s) 902
AccII CGCG 4 cut(s) 173, 221, 249, 368
AccIII TCCGGA 1 cut(s) 460
AclWI GGATC 2 cut(s) 386, 746
AcoI YGGCCR 3 cut(s) 239, 527, 969
AcsI RAATTY 2 cut(s) 21, 893
AcyI GRCGYC 1 cut(s) 659
AfaI GTAC 2 cut(s) 341, 1006
AfiI CCNNNNNNNGG 5 cut(s) 225, 248, 277, 329, 755
AgsI TTSAA 3 cut(s) 449, 468, 893
AjiI CACGTC 1 cut(s) 568
AjnI CCWGG 1 cut(s) 399
AluBI AGCT 6 cut(s) 496, 644, 666, 676, 697, 811
AluI AGCT 6 cut(s) 496, 644, 666, 676, 697, 811
Alw21I GWGCWC 3 cut(s) 156, 256, 646
Alw26I GTCTC 1 cut(s) 249
AlwI GGATC 2 cut(s) 386, 746
Aor13HI TCCGGA 1 cut(s) 460
AoxI GGCC 6 cut(s) 3, 176, 239, 358, 527, 969
ApeKI GCWGC 3 cut(s) 508, 511, 574
ApoI RAATTY 2 cut(s) 21, 893
AspLEI GCGC 5 cut(s) 223, 335, 368, 574, 661
AspS9I GGNCC 2 cut(s) 458, 523
AsuC2I CCSGG 1 cut(s) 757
AsuHPI GGTGA 4 cut(s) 49, 449, 637, 826
AsuII TTCGAA 1 cut(s) 982
AvaII GGWCC 2 cut(s) 458, 523
AxyI CCTNAGG 1 cut(s) 728
BalI TGGCCA 1 cut(s) 971
BanI GGYRCC 1 cut(s) 658
BanII GRGCYC 1 cut(s) 646
BbsI GAAGAC 2 cut(s) 423, 860
Bbv12I GWGCWC 3 cut(s) 156, 256, 646
BbvCI CCTCAGC 2 cut(s) 635, 698
BbvI GCAGC 3 cut(s) 495, 523, 561
BccI CCATC 1 cut(s) 434
BceAI ACGGC 5 cut(s) 163, 172, 208, 226, 562
BciT130I CCWGG 1 cut(s) 401
BcnI CCSGG 1 cut(s) 757
BcoDI GTCTC 1 cut(s) 249
BfaI CTAG 1 cut(s) 336
BfmI CTRYAG 1 cut(s) 509
BfoI RGCGCY 3 cut(s) 336, 575, 662
BisI GCNGC 6 cut(s) 160, 185, 477, 509, 512, 575
BlpI GCTNAGC 1 cut(s) 672
BlsI GCNGC 6 cut(s) 161, 186, 478, 510, 513, 576
Bme1390I CCNGG 2 cut(s) 401, 757
Bme18I GGWCC 2 cut(s) 458, 523
BmgBI CACGTC 1 cut(s) 568
BmgT120I GGNCC 2 cut(s) 458, 523
BmiI GGNNCC 4 cut(s) 398, 524, 660, 1108
BmrFI CCNGG 2 cut(s) 401, 757
BmsI GCATC 1 cut(s) 1043
BpiI GAAGAC 2 cut(s) 423, 860
BplI GAGNNNNNCTC 4 cut(s) 628, 660, 984, 1016
BpmI CTGGAG 1 cut(s) 797
Bpu10I CCTNAGC 2 cut(s) 635, 698
Bpu1102I GCTNAGC 1 cut(s) 672
Bpu14I TTCGAA 1 cut(s) 982
BpuEI CTTGAG 3 cut(s) 107, 806, 945
BpuMI CCSGG 1 cut(s) 757
BsaAI YACGTR 1 cut(s) 343
BsaHI GRCGYC 1 cut(s) 659
BsaJI CCNNGG 5 cut(s) 224, 258, 303, 400, 578
BsaWI WCCGGW 2 cut(s) 387, 460
Bsc4I CCNNNNNNNGG 5 cut(s) 225, 248, 277, 329, 755
Bse118I RCCGGY 1 cut(s) 472
Bse21I CCTNAGG 1 cut(s) 728
BseAI TCCGGA 1 cut(s) 460
BseBI CCWGG 1 cut(s) 401
BseDI CCNNGG 5 cut(s) 224, 258, 303, 400, 578
BseGI GGATG 3 cut(s) 117, 622, 694
BseLI CCNNNNNNNGG 5 cut(s) 225, 248, 277, 329, 755
BseMII CTCAG 6 cut(s) 52, 154, 626, 663, 689, 719
BseX3I CGGCCG 1 cut(s) 527
BseXI GCAGC 3 cut(s) 495, 523, 561
Bsh1236I CGCG 4 cut(s) 173, 221, 249, 368
Bsh1285I CGRYCG 1 cut(s) 530
BshFI GGCC 6 cut(s) 5, 178, 241, 360, 529, 971
BshNI GGYRCC 1 cut(s) 658
BsiEI CGRYCG 1 cut(s) 530
BsiHKAI GWGCWC 3 cut(s) 156, 256, 646
BsiSI CCGG 6 cut(s) 388, 461, 473, 526, 530, 756
BslFI GGGAC 1 cut(s) 82
BslI CCNNNNNNNGG 5 cut(s) 225, 248, 277, 329, 755
BsmAI GTCTC 1 cut(s) 249
BsmBI CGTCTC 1 cut(s) 249
BsmFI GGGAC 1 cut(s) 82
BsnI GGCC 6 cut(s) 5, 178, 241, 360, 529, 971
Bsp119I TTCGAA 1 cut(s) 982
Bsp1286I GDGCHC 3 cut(s) 156, 256, 646
Bsp13I TCCGGA 1 cut(s) 460
Bsp143I GATC 2 cut(s) 378, 738
Bsp1720I GCTNAGC 1 cut(s) 672
BspANI GGCC 6 cut(s) 5, 178, 241, 360, 529, 971
BspCNI CTCAG 6 cut(s) 51, 153, 627, 664, 690, 720
BspEI TCCGGA 1 cut(s) 460
BspFNI CGCG 4 cut(s) 173, 221, 249, 368
BspHI TCATGA 4 cut(s) 787, 829, 844, 862
BspLI GGNNCC 4 cut(s) 398, 524, 660, 1108
BspMAI CTGCAG 1 cut(s) 513
BspPI GGATC 2 cut(s) 386, 746
BspT104I TTCGAA 1 cut(s) 982
BspT107I GGYRCC 1 cut(s) 658
BsrBI CCGCTC 3 cut(s) 55, 435, 483
BsrFI RCCGGY 1 cut(s) 472
BssAI RCCGGY 1 cut(s) 472
BssECI CCNNGG 5 cut(s) 224, 258, 303, 400, 578
BssMI GATC 2 cut(s) 378, 738
BssNI GRCGYC 1 cut(s) 659
BssT1I CCWWGG 1 cut(s) 303
Bst2UI CCWGG 1 cut(s) 401
Bst4CI ACNGT 2 cut(s) 108, 458
Bst6I CTCTTC 1 cut(s) 95
BstACI GRCGYC 1 cut(s) 659
BstAPI GCANNNNNTGC 1 cut(s) 772
BstBAI YACGTR 1 cut(s) 343
BstBI TTCGAA 1 cut(s) 982
BstC8I GCNNGC 3 cut(s) 474, 481, 768
BstDEI CTNAG 6 cut(s) 38, 140, 635, 672, 698, 728
BstDSI CCRYGG 2 cut(s) 224, 578
BstF5I GGATG 3 cut(s) 117, 622, 694
BstFNI CGCG 4 cut(s) 173, 221, 249, 368
BstH2I RGCGCY 3 cut(s) 336, 575, 662
BstHHI GCGC 5 cut(s) 223, 335, 368, 574, 661
BstKTI GATC 2 cut(s) 381, 741
BstMAI GTCTC 1 cut(s) 249
BstMBI GATC 2 cut(s) 378, 738
BstMCI CGRYCG 1 cut(s) 530
BstMWI GCNNNNNNNGC 4 cut(s) 184, 772, 817, 1115
BstNI CCWGG 1 cut(s) 401
BstSCI CCNGG 2 cut(s) 399, 755
BstSFI CTRYAG 1 cut(s) 509
BstUI CGCG 4 cut(s) 173, 221, 249, 368
BstV1I GCAGC 3 cut(s) 495, 523, 561
BstV2I GAAGAC 2 cut(s) 423, 860
BstZI CGGCCG 1 cut(s) 527
Bsu36I CCTNAGG 1 cut(s) 728
BsuRI GGCC 6 cut(s) 5, 178, 241, 360, 529, 971
BtgI CCRYGG 2 cut(s) 224, 578
BtrI CACGTC 1 cut(s) 568
BtsCI GGATG 3 cut(s) 117, 622, 694
BtsIMutI CAGTG 2 cut(s) 748, 1033
Cac8I GCNNGC 3 cut(s) 474, 481, 768
CciI TCATGA 4 cut(s) 787, 829, 844, 862
CfoI GCGC 5 cut(s) 223, 335, 368, 574, 661
Cfr10I RCCGGY 1 cut(s) 472
Cfr13I GGNCC 2 cut(s) 458, 523
CpoI CGGWCCG 1 cut(s) 458
Csp6I GTAC 2 cut(s) 340, 1005
CspCI CAANNNNNGTGG 2 cut(s) 292, 327
CspI CGGWCCG 1 cut(s) 458
CviAII CATG 7 cut(s) 788, 830, 845, 863, 932, 939, 1016
CviQI GTAC 2 cut(s) 340, 1005
DdeI CTNAG 6 cut(s) 38, 140, 635, 672, 698, 728
DinI GGCGCC 1 cut(s) 660
DpnI GATC 2 cut(s) 380, 740
DpnII GATC 2 cut(s) 378, 738
EaeI YGGCCR 3 cut(s) 239, 527, 969
EagI CGGCCG 1 cut(s) 527
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
Ecl136II GAGCTC 1 cut(s) 644
EclXI CGGCCG 1 cut(s) 527
Eco130I CCWWGG 1 cut(s) 303
Eco24I GRGCYC 1 cut(s) 646
Eco47I GGWCC 2 cut(s) 458, 523
Eco52I CGGCCG 1 cut(s) 527
Eco53kI GAGCTC 1 cut(s) 644
Eco81I CCTNAGG 1 cut(s) 728
EcoICRI GAGCTC 1 cut(s) 644
EcoRII CCWGG 1 cut(s) 399
EcoT14I CCWWGG 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 646
EgeI GGCGCC 1 cut(s) 660
EheI GGCGCC 1 cut(s) 660
ErhI CCWWGG 1 cut(s) 303
Esp3I CGTCTC 1 cut(s) 249
FaeI CATG 7 cut(s) 791, 833, 848, 866, 935, 942, 1019
FaqI GGGAC 1 cut(s) 82
FatI CATG 7 cut(s) 787, 829, 844, 862, 931, 938, 1015
FauI CCCGC 3 cut(s) 60, 278, 507
FblI GTMKAC 1 cut(s) 902
Fnu4HI GCNGC 6 cut(s) 160, 185, 477, 509, 512, 575
FokI GGATG 3 cut(s) 104, 629, 701
FriOI GRGCYC 1 cut(s) 646
Fsp4HI GCNGC 6 cut(s) 160, 185, 477, 509, 512, 575
FspBI CTAG 1 cut(s) 336
GlaI GCGC 5 cut(s) 222, 334, 367, 573, 660
GluI GCNGC 6 cut(s) 160, 185, 477, 509, 512, 575
GsuI CTGGAG 1 cut(s) 797
HaeII RGCGCY 3 cut(s) 336, 575, 662
HaeIII GGCC 6 cut(s) 5, 178, 241, 360, 529, 971
HapII CCGG 6 cut(s) 388, 461, 473, 526, 530, 756
HhaI GCGC 5 cut(s) 223, 335, 368, 574, 661
Hin1I GRCGYC 1 cut(s) 659
Hin1II CATG 7 cut(s) 791, 833, 848, 866, 935, 942, 1019
Hin6I GCGC 5 cut(s) 221, 333, 366, 572, 659
HinP1I GCGC 5 cut(s) 221, 333, 366, 572, 659
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 4 cut(s) 291, 299, 464, 784
HpaII CCGG 6 cut(s) 388, 461, 473, 526, 530, 756
HphI GGTGA 4 cut(s) 49, 449, 637, 826
Hpy166II GTNNAC 3 cut(s) 283, 346, 903
Hpy188I TCNGA 5 cut(s) 28, 41, 143, 262, 648
Hpy188III TCNNGA 7 cut(s) 461, 727, 788, 830, 845, 863, 890
Hpy8I GTNNAC 3 cut(s) 283, 346, 903
Hpy99I CGWCG 4 cut(s) 184, 208, 416, 563
HpyAV CCTTC 8 cut(s) 16, 81, 139, 547, 580, 622, 649, 796
HpyCH4III ACNGT 2 cut(s) 108, 458
HpyCH4IV ACGT 2 cut(s) 342, 567
HpyCH4V TGCA 2 cut(s) 511, 912
HpyF10VI GCNNNNNNNGC 4 cut(s) 184, 772, 817, 1115
HpyF3I CTNAG 6 cut(s) 38, 140, 635, 672, 698, 728
HpySE526I ACGT 2 cut(s) 342, 567
Hsp92I GRCGYC 1 cut(s) 659
Hsp92II CATG 7 cut(s) 791, 833, 848, 866, 935, 942, 1019
HspAI GCGC 5 cut(s) 221, 333, 366, 572, 659
KasI GGCGCC 1 cut(s) 658
Kpn2I TCCGGA 1 cut(s) 460
KroI GCCGGC 1 cut(s) 472
KroNI GCCGGC 1 cut(s) 474
Kzo9I GATC 2 cut(s) 378, 738
LmnI GCTCC 4 cut(s) 259, 694, 808, 1106
Lsp1109I GCAGC 3 cut(s) 495, 523, 561
LweI GCATC 1 cut(s) 1043
MaeI CTAG 1 cut(s) 336
MaeII ACGT 2 cut(s) 342, 567
MalI GATC 2 cut(s) 380, 740
MbiI CCGCTC 3 cut(s) 55, 435, 483
MboI GATC 2 cut(s) 378, 738
MboII GAAGA 4 cut(s) 82, 428, 793, 865
MhlI GDGCHC 3 cut(s) 156, 256, 646
MlsI TGGCCA 1 cut(s) 971
MluCI AATT 7 cut(s) 21, 449, 605, 893, 913, 973, 1044
MluNI TGGCCA 1 cut(s) 971
Mly113I GGCGCC 1 cut(s) 659
MlyI GAGTC 2 cut(s) 300, 308
Mox20I TGGCCA 1 cut(s) 971
MroI TCCGGA 1 cut(s) 460
MroNI GCCGGC 1 cut(s) 472
MscI TGGCCA 1 cut(s) 971
MseI TTAA 3 cut(s) 1043, 1059, 1068
MslI CAYNNNNRTG 2 cut(s) 1020, 1068
Msp20I TGGCCA 1 cut(s) 971
MspA1I CMGCKG 1 cut(s) 514
MspI CCGG 6 cut(s) 388, 461, 473, 526, 530, 756
MspR9I CCNGG 2 cut(s) 401, 757
MvaI CCWGG 1 cut(s) 401
MvnI CGCG 4 cut(s) 173, 221, 249, 368
MwoI GCNNNNNNNGC 4 cut(s) 184, 772, 817, 1115
NaeI GCCGGC 1 cut(s) 474
NarI GGCGCC 1 cut(s) 659
NciI CCSGG 1 cut(s) 757
NdeII GATC 2 cut(s) 378, 738
NgoMIV GCCGGC 1 cut(s) 472
NlaIII CATG 7 cut(s) 791, 833, 848, 866, 935, 942, 1019
NlaIV GGNNCC 4 cut(s) 398, 524, 660, 1108
NmeAIII GCCGAG 3 cut(s) 348, 477, 687
NspV TTCGAA 1 cut(s) 982
PagI TCATGA 4 cut(s) 787, 829, 844, 862
PcsI WCGNNNNNNNCGW 1 cut(s) 659
PdiI GCCGGC 1 cut(s) 474
PfeI GAWTC 2 cut(s) 464, 784
PkrI GCNGC 6 cut(s) 161, 186, 478, 510, 513, 576
PleI GAGTC 2 cut(s) 299, 307
PluTI GGCGCC 1 cut(s) 662
PpsI GAGTC 2 cut(s) 299, 307
Ppu21I YACGTR 1 cut(s) 343
Psp124BI GAGCTC 1 cut(s) 646
Psp6I CCWGG 1 cut(s) 399
PspGI CCWGG 1 cut(s) 399
PspN4I GGNNCC 4 cut(s) 398, 524, 660, 1108
PspPI GGNCC 2 cut(s) 458, 523
PstI CTGCAG 1 cut(s) 513
RsaI GTAC 2 cut(s) 341, 1006
RsaNI GTAC 2 cut(s) 340, 1005
RseI CAYNNNNRTG 2 cut(s) 1020, 1068
Rsr2I CGGWCCG 1 cut(s) 458
RsrII CGGWCCG 1 cut(s) 458
SacI GAGCTC 1 cut(s) 646
SaqAI TTAA 3 cut(s) 1043, 1059, 1068
SatI GCNGC 6 cut(s) 160, 185, 477, 509, 512, 575
Sau3AI GATC 2 cut(s) 378, 738
Sau96I GGNCC 2 cut(s) 458, 523
SchI GAGTC 2 cut(s) 300, 308
ScrFI CCNGG 2 cut(s) 401, 757
SduI GDGCHC 3 cut(s) 156, 256, 646
SfaNI GCATC 1 cut(s) 1043
SfcI CTRYAG 1 cut(s) 509
SfoI GGCGCC 1 cut(s) 660
SfuI TTCGAA 1 cut(s) 982
SinI GGWCC 2 cut(s) 458, 523
SmiMI CAYNNNNRTG 2 cut(s) 1020, 1068
SmlI CTYRAG 3 cut(s) 122, 821, 960
SmoI CTYRAG 3 cut(s) 122, 821, 960
Sse9I AATT 7 cut(s) 21, 449, 605, 893, 913, 973, 1044
SspDI GGCGCC 1 cut(s) 658
SspMI CTAG 1 cut(s) 336
SstI GAGCTC 1 cut(s) 646
StyD4I CCNGG 2 cut(s) 399, 755
StyI CCWWGG 1 cut(s) 303
TaaI ACNGT 2 cut(s) 108, 458
TaiI ACGT 2 cut(s) 345, 570
TaqI TCGA 2 cut(s) 653, 982
TasI AATT 7 cut(s) 21, 449, 605, 893, 913, 973, 1044
TauI GCSGC 3 cut(s) 162, 187, 479
TfiI GAWTC 2 cut(s) 464, 784
Tru1I TTAA 3 cut(s) 1043, 1059, 1068
Tru9I TTAA 3 cut(s) 1043, 1059, 1068
TscAI CASTG 2 cut(s) 748, 1033
TseI GCWGC 3 cut(s) 508, 511, 574
TspDTI ATGAA 4 cut(s) 776, 818, 866, 927
TspGWI ACGGA 1 cut(s) 992
TspRI CASTG 2 cut(s) 748, 1033
VpaK11BI GGWCC 2 cut(s) 458, 523
XapI RAATTY 2 cut(s) 21, 893
XmiI GTMKAC 1 cut(s) 902
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.