Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0009432

Physical Location & Seq

Genomic Coordinates Reverse (-)

5333953 .. 5341008

Gene Structure 7056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG074800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2349 bp

ATGGCCTTCGCAACCGCCAAAATTTCCGAAATGCCACTCAGAAACTCACTCCCGCTCACCTCTCACTCCCCTTCCTCTCTCAACCTCCTCTTCTCGTCCCCAAAACCGTCATTTCACATCCTCAAGCCCTTCTCTGCTCTCAGAACCACCGAGCACGGCGGCAACCCGAACGCGAGGCCGTCGCCGCACAAGTCCAAGCCCTCGTCGTCCTCCTCCACCGCGCCGTGGCTGAACAAGTGGCCGTCTCGCTGTGCTCCGTCGGAGTTGCCCCGCCATAAGGTCAACGATAGAGTCAAGGAGTCCAAGGGCGGTGGAGAGAAGCCGAGTAATGGCGCTAGGTACGTGGACAAGGACAAAGGCCAGAGCGCGATAGAGAGGATCGTGTTCCGGTTGCGGAACCTGGGGTTAGGCGACGAAGACGAGGAGGAGGAGAGCGGTGATGGTGTTGAATTGGACGGTCCGGATTCAATGCCGGCGGCGAGCGGAGAGGAGAAGCTCGGCGATTTGCTGCAGCGGGAGTGGGTCCGGCCGGACTATATATTGGTGGAGGAGAAGGGCGACGATGACGTGGCGCTGCCGTGGGAGAAGGAGGAGGAGGAGGAGGAGGAATTGAGTGAGGATGAGGAGGTGAAGGGGCTGAGGAGAGCTCGGAGGTCGAAGGCGCCGAGCTTGGCTGAGCTGACGATTGAGGATGAGGAGCTGAGGCGATTGAGGAGGTTGGGAATGTTCCTGAGGGAGAGGATCAGTGTGCCGAAAGCCGGGATCACGCAGGCTGTGCTGGAGAAGATTCATGATAAGTGGAGGAAGGAGGAGCTGGTGAGGCTCAAGTTTCATGAGGTTTTGGCTCATGATATGAAGACTGCTCATGAGATTGTTGAGCGTCGAACAGGAGGTTTAGTTTTATGGAGATCAGGGAGTGTCATGGTTGTGTACCGTGGTATTAACTACAAAGGCCCTTCTAAATCCGAACCCGTTGGTAGGGAAGGAAATGCTCTTTTCATCCCAGATGTTTCATCAGCTGAAACTCCGGTAACAAGAAGTGGCAATGATGTGACTTCAACTCCAGATAAGACTGAGCAAGCTGTGAAAATTCCAGCACCTCTTCCGAAGATGACAGAGGAAGAAGCTGAATTCAACAGCTTATTGGATGAATTAGGTCCTCGTTTTGTTGAGTATTGGGGTACAGGAATACTTCCTGTTGACGCTGATTTACTTCCTAAAACAATCCCGGGTTACAAAACACCTTTCAGGCTTCTTCCTACCGGGATGCGATCACGGCTGACTAATGCAGAGATGACTAATTTGCGGAAACTTGCTAAATCAATTCCATGTCATTTTGCCCTTGGGAGAAATAGAAATCATCAAGGGTTAGCATCTGCTATACTTAAAGTTTGGGAGAAAAGTTCTGTGGCAAAGATTGCTGTCAAACGAGGTATCCAGAATACAAACAACAAAATAATGGCTGAGGAGCTGAAGGCATTAACAGGTGGTGTTTTACTACTCAGAAACAAATATTACATTGTCATTTACCGTGGAAAGGACTTTATCCCAACAAGTGTAGCTACTGCTCTGGCTGAAAGACAGGAACTAACGAAACAGGTTCAAGATGTGGAAGAGATAGTGCGTGTCAAACCAATAGATGCAGCTTCTTCAGGTACAGAGGAAGGACAGGCACTTGCAGGAACTTTGGCAGAGTTCTACGAGGCTCAAGCCCGATGGGGAAGAGAAATATCTGCTGAAGAACGTGAAAAGATGATTGAAGAAGATTCAAAAGCTAAGATTGCCAGGCGTGCAAAACGAATTGAACATAAGCTAGGCGTTGCCCAAGCTAAAAAGCTTAGAGCAGAGAGACTCCTATCCAAGATAGAATCAGCAATGCTTCCTGCAGGTCCTGATTATGATCAGGAAACCATCACTGATGAGGAGCGAGTTATGTTTCGCAGGGTTGGCTTAAGAATGAAAGCATACTTGCCTCTTGGCATACGTGGTGTCTTTGATGGTGTCATCGAAAACATGCATTTGCATTGGAAGCACAGAGAGCTAGTGAAATTAATATCCAAACAGAAGACCCTTGCTTTCGTTGAAGATTCAGCCCGGTTGTTGGAATATGAGAGCGGTGGCATACTGGTGGCTATAGAAAGAGTTCCCAAAGGATATGCTCTTATATACTATCGTGGAAAGAATTATAGGCGTCCCATTACCTTGAGGCCAAGGAACCTTTTAACTAAGGCGAAGGCATTGAAACGTTCGGTGGCCATGCAACGCCATGAGGTTTCAGTTTCTTACTCTTCCCCAGTTTCTCTGTTGAATCTGATATTTGTCTTTGATTTGTTCTGCACCTCACGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

782

Amino Acids

87.98

Weight (kDa)

9.17

Isoelectric Point (pI)

58.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRS1_YhbY	PF01985	230 - 312	4.2e-20	CRS1 / YhbY (CRM) domain
CRS1_YhbY	PF01985	427 - 511	1.6e-15	CRS1 / YhbY (CRM) domain
CRS1_YhbY	PF01985	638 - 725	1.3e-13	CRS1 / YhbY (CRM) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18390
fragaria_vesca	FvH4_5g12070 FvH4_5g12070 FvH4_5g12070 FvH4_5g12070
malus_domestica	MD06G1216600.v1.1 MD14G1227100.v1.1
prunus_persica	Prupe.5G221800_v2.0.a1
pyrus_communis	pycom06g19300 pycom14g18850
rosa_chinensis	RchiOBHm_Chr7g0185501
rosa_laevigata	RLG00000004907
rosa_multiflora	Rmu_sc0008223.1_g000008 Rmu_sc0010190.1_g000020 Rmu_sc0042727.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268880
rosa_rugosa	Rorug06G0469800
rosa_samantha	Rh7AG072900 Rh7BG074700 Rh7CG074800 Rh7DG074700
rosa_wichuraiana	Rw7G006220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1877
AccB1I	GGYRCC	1 cut(s)	661
AccBSI	CCGCTC	4 cut(s)	55, 435, 483, 2115
AccII	CGCG	3 cut(s)	173, 221, 368
AccIII	TCCGGA	1 cut(s)	460
AclI	AACGTT	1 cut(s)	2245
AclWI	GGATC	3 cut(s)	386, 749, 770
AcoI	YGGCCR	3 cut(s)	239, 527, 2253
AcsI	RAATTY	3 cut(s)	21, 1089, 1130
AcuI	CTGAAG	3 cut(s)	1493, 1635, 1758
AcyI	GRCGYC	2 cut(s)	662, 2191
AfaI	GTAC	4 cut(s)	341, 932, 1183, 1657
AfiI	CCNNNNNNNGG	7 cut(s)	225, 277, 329, 758, 978, 1537, 2101
AflII	CTTAAG	1 cut(s)	1951
AjiI	CACGTC	1 cut(s)	568
AjnI	CCWGG	2 cut(s)	399, 1784
Alw21I	GWGCWC	3 cut(s)	156, 256, 649
Alw26I	GTCTC	2 cut(s)	249, 1843
AlwI	GGATC	3 cut(s)	386, 749, 770
AlwNI	CAGNNNCTG	1 cut(s)	1892
Ama87I	CYCGRG	1 cut(s)	1228
Aor13HI	TCCGGA	1 cut(s)	460
AoxI	GGCC	8 cut(s)	3, 176, 239, 358, 527, 952, 2207, 2253
ApeKI	GCWGC	4 cut(s)	508, 511, 574, 1643
ApoI	RAATTY	3 cut(s)	21, 1089, 1130
AseI	ATTAAT	1 cut(s)	2051
Asp700I	GAANNNNTTC	1 cut(s)	2142
AspLEI	GCGC	5 cut(s)	223, 335, 368, 574, 664
AspS9I	GGNCC	5 cut(s)	458, 523, 953, 1157, 1889
AsuC2I	CCSGG	5 cut(s)	760, 1229, 1230, 1264, 2095
AsuHPI	GGTGA	4 cut(s)	49, 449, 640, 829
AvaI	CYCGRG	1 cut(s)	1228
AvaII	GGWCC	4 cut(s)	458, 523, 1157, 1889
AxyI	CCTNAGG	1 cut(s)	731
BalI	TGGCCA	1 cut(s)	2255
BanI	GGYRCC	1 cut(s)	661
BanII	GRGCYC	1 cut(s)	649
BbsI	GAAGAC	3 cut(s)	423, 863, 2072
Bbv12I	GWGCWC	3 cut(s)	156, 256, 649
BbvCI	CCTCAGC	3 cut(s)	638, 701, 1464
BbvI	GCAGC	4 cut(s)	495, 523, 561, 1655
BccI	CCATC	4 cut(s)	434, 1710, 1919, 1991
BceAI	ACGGC	6 cut(s)	163, 172, 208, 226, 562, 1292
BciT130I	CCWGG	2 cut(s)	401, 1786
BciVI	GTATCC	1 cut(s)	1445
BclI	TGATCA	1 cut(s)	1900
BcnI	CCSGG	5 cut(s)	760, 1229, 1230, 1264, 2095
BcoDI	GTCTC	2 cut(s)	249, 1843
BfaI	CTAG	3 cut(s)	336, 1814, 2042
BfmI	CTRYAG	3 cut(s)	509, 1884, 2133
BfoI	RGCGCY	3 cut(s)	336, 575, 665
BfrI	CTTAAG	1 cut(s)	1951
BfuAI	ACCTGC	1 cut(s)	1877
BfuI	GTATCC	1 cut(s)	1445
BisI	GCNGC	7 cut(s)	160, 185, 477, 509, 512, 575, 1644
BlpI	GCTNAGC	1 cut(s)	675
BlsI	GCNGC	7 cut(s)	161, 186, 478, 510, 513, 576, 1645
Bme1390I	CCNGG	7 cut(s)	401, 760, 1229, 1230, 1264, 1786, 2095
Bme18I	GGWCC	4 cut(s)	458, 523, 1157, 1889
BmeT110I	CYCGRG	1 cut(s)	1228
BmgBI	CACGTC	1 cut(s)	568
BmgT120I	GGNCC	5 cut(s)	458, 523, 953, 1157, 1889
BmiI	GGNNCC	4 cut(s)	398, 524, 663, 2216
BmrFI	CCNGG	7 cut(s)	401, 760, 1229, 1230, 1264, 1786, 2095
BmrI	ACTGGG	1 cut(s)	2288
BmsI	GCATC	3 cut(s)	1257, 1382, 1630
BmuI	ACTGGG	1 cut(s)	2288
BpiI	GAAGAC	3 cut(s)	423, 863, 2072
BplI	GAGNNNNNCTC	2 cut(s)	631, 663
BpmI	CTGGAG	2 cut(s)	800, 1047
Bpu10I	CCTNAGC	3 cut(s)	638, 701, 1464
Bpu1102I	GCTNAGC	1 cut(s)	675
BpuEI	CTTGAG	4 cut(s)	107, 809, 1692, 2224
BpuMI	CCSGG	5 cut(s)	760, 1229, 1230, 1264, 2095
BsaAI	YACGTR	2 cut(s)	343, 1985
BsaBI	GATNNNNATC	1 cut(s)	1899
BsaHI	GRCGYC	2 cut(s)	662, 2191
BsaJI	CCNNGG	9 cut(s)	224, 303, 400, 578, 934, 1228, 1342, 1531, 2210
BsaWI	WCCGGW	3 cut(s)	387, 460, 1027
BsaXI	ACNNNNNCTCC	4 cut(s)	882, 912, 1045, 1075
Bsc4I	CCNNNNNNNGG	7 cut(s)	225, 277, 329, 758, 978, 1537, 2101
Bse118I	RCCGGY	1 cut(s)	472
Bse1I	ACTGG	2 cut(s)	2130, 2294
Bse21I	CCTNAGG	1 cut(s)	731
Bse3DI	GCAATG	2 cut(s)	1051, 1881
Bse8I	GATNNNNATC	1 cut(s)	1899
BseAI	TCCGGA	1 cut(s)	460
BseBI	CCWGG	2 cut(s)	401, 1786
BseDI	CCNNGG	9 cut(s)	224, 303, 400, 578, 934, 1228, 1342, 1531, 2210
BseGI	GGATG	6 cut(s)	117, 625, 697, 999, 1153, 1272
BseJI	GATNNNNATC	1 cut(s)	1899
BseLI	CCNNNNNNNGG	7 cut(s)	225, 277, 329, 758, 978, 1537, 2101
BseMI	GCAATG	2 cut(s)	1051, 1881
BseMII	CTCAG	9 cut(s)	52, 154, 629, 666, 692, 722, 1065, 1455, 1516
BseNI	ACTGG	2 cut(s)	2130, 2294
BseX3I	CGGCCG	1 cut(s)	527
BseXI	GCAGC	4 cut(s)	495, 523, 561, 1655
BsgI	GTGCAG	1 cut(s)	2320
Bsh1236I	CGCG	3 cut(s)	173, 221, 368
Bsh1285I	CGRYCG	1 cut(s)	530
BshFI	GGCC	8 cut(s)	5, 178, 241, 360, 529, 954, 2209, 2255
BshNI	GGYRCC	1 cut(s)	661
BsiEI	CGRYCG	1 cut(s)	530
BsiHKAI	GWGCWC	3 cut(s)	156, 256, 649
BsiHKCI	CYCGRG	1 cut(s)	1228
BslFI	GGGAC	2 cut(s)	82, 2178
BslI	CCNNNNNNNGG	7 cut(s)	225, 277, 329, 758, 978, 1537, 2101
BsmAI	GTCTC	2 cut(s)	249, 1843
BsmBI	CGTCTC	1 cut(s)	249
BsmFI	GGGAC	2 cut(s)	82, 2178
BsnI	GGCC	8 cut(s)	5, 178, 241, 360, 529, 954, 2209, 2255
BsoBI	CYCGRG	1 cut(s)	1228
Bsp1286I	GDGCHC	3 cut(s)	156, 256, 649
Bsp13I	TCCGGA	1 cut(s)	460
Bsp143I	GATC	6 cut(s)	378, 741, 762, 908, 1271, 1900
Bsp1720I	GCTNAGC	1 cut(s)	675
BspANI	GGCC	8 cut(s)	5, 178, 241, 360, 529, 954, 2209, 2255
BspCNI	CTCAG	9 cut(s)	51, 153, 630, 667, 693, 723, 1066, 1456, 1515
BspEI	TCCGGA	1 cut(s)	460
BspFNI	CGCG	3 cut(s)	173, 221, 368
BspHI	TCATGA	4 cut(s)	790, 832, 847, 865
BspLI	GGNNCC	4 cut(s)	398, 524, 663, 2216
BspMAI	CTGCAG	2 cut(s)	513, 1888
BspMI	ACCTGC	1 cut(s)	1877
BspPI	GGATC	3 cut(s)	386, 749, 770
BspT107I	GGYRCC	1 cut(s)	661
BspTI	CTTAAG	1 cut(s)	1951
BsrBI	CCGCTC	4 cut(s)	55, 435, 483, 2115
BsrDI	GCAATG	2 cut(s)	1051, 1881
BsrFI	RCCGGY	1 cut(s)	472
BsrI	ACTGG	2 cut(s)	2130, 2294
BssAI	RCCGGY	1 cut(s)	472
BssECI	CCNNGG	9 cut(s)	224, 303, 400, 578, 934, 1228, 1342, 1531, 2210
BssMI	GATC	6 cut(s)	378, 741, 762, 908, 1271, 1900
BssNI	GRCGYC	2 cut(s)	662, 2191
BssT1I	CCWWGG	3 cut(s)	303, 1342, 2210
Bst2UI	CCWGG	2 cut(s)	401, 1786
Bst4CI	ACNGT	4 cut(s)	108, 458, 935, 1532
Bst6I	CTCTTC	5 cut(s)	95, 1107, 1608, 1717, 2293
BstACI	GRCGYC	2 cut(s)	662, 2191
BstAFI	CTTAAG	1 cut(s)	1951
BstAPI	GCANNNNNTGC	2 cut(s)	775, 1418
BstBAI	YACGTR	2 cut(s)	343, 1985
BstC8I	GCNNGC	5 cut(s)	474, 481, 771, 1080, 1791
BstDSI	CCRYGG	4 cut(s)	224, 578, 934, 1531
BstF5I	GGATG	6 cut(s)	117, 625, 697, 999, 1153, 1272
BstFNI	CGCG	3 cut(s)	173, 221, 368
BstH2I	RGCGCY	3 cut(s)	336, 575, 665
BstHHI	GCGC	5 cut(s)	223, 335, 368, 574, 664
BstKTI	GATC	6 cut(s)	381, 744, 765, 911, 1274, 1903
BstMAI	GTCTC	2 cut(s)	249, 1843
BstMBI	GATC	6 cut(s)	378, 741, 762, 908, 1271, 1900
BstMCI	CGRYCG	1 cut(s)	530
BstNI	CCWGG	2 cut(s)	401, 1786
BstNSI	RCATGY	1 cut(s)	2017
BstSCI	CCNGG	7 cut(s)	399, 758, 1227, 1228, 1262, 1784, 2093
BstSFI	CTRYAG	3 cut(s)	509, 1884, 2133
BstUI	CGCG	3 cut(s)	173, 221, 368
BstV1I	GCAGC	4 cut(s)	495, 523, 561, 1655
BstV2I	GAAGAC	3 cut(s)	423, 863, 2072
BstZI	CGGCCG	1 cut(s)	527
Bsu36I	CCTNAGG	1 cut(s)	731
BsuI	GTATCC	1 cut(s)	1445
BsuRI	GGCC	8 cut(s)	5, 178, 241, 360, 529, 954, 2209, 2255
BtgI	CCRYGG	4 cut(s)	224, 578, 934, 1531
BtrI	CACGTC	1 cut(s)	568
BtsCI	GGATG	6 cut(s)	117, 625, 697, 999, 1153, 1272
BtsIMutI	CAGTG	2 cut(s)	751, 1914
BveI	ACCTGC	1 cut(s)	1877
Cac8I	GCNNGC	5 cut(s)	474, 481, 771, 1080, 1791
CaiI	CAGNNNCTG	1 cut(s)	1892
CciI	TCATGA	4 cut(s)	790, 832, 847, 865
CfoI	GCGC	5 cut(s)	223, 335, 368, 574, 664
Cfr10I	RCCGGY	1 cut(s)	472
Cfr13I	GGNCC	5 cut(s)	458, 523, 953, 1157, 1889
Cfr9I	CCCGGG	1 cut(s)	1228
CpoI	CGGWCCG	1 cut(s)	458
CseI	GACGC	3 cut(s)	869, 1211, 2180
Csp6I	GTAC	4 cut(s)	340, 931, 1182, 1656
CspCI	CAANNNNNGTGG	2 cut(s)	292, 327
CspI	CGGWCCG	1 cut(s)	458
CviAII	CATG	9 cut(s)	791, 833, 848, 866, 922, 1329, 2014, 2257, 2267
CviQI	GTAC	4 cut(s)	340, 931, 1182, 1656
DinI	GGCGCC	1 cut(s)	663
DpnI	GATC	6 cut(s)	380, 743, 764, 910, 1273, 1902
DpnII	GATC	6 cut(s)	378, 741, 762, 908, 1271, 1900
EaeI	YGGCCR	3 cut(s)	239, 527, 2253
EagI	CGGCCG	1 cut(s)	527
Eam1104I	CTCTTC	5 cut(s)	95, 1107, 1608, 1717, 2293
EarI	CTCTTC	5 cut(s)	95, 1107, 1608, 1717, 2293
Ecl136II	GAGCTC	1 cut(s)	647
EclXI	CGGCCG	1 cut(s)	527
Eco130I	CCWWGG	3 cut(s)	303, 1342, 2210
Eco24I	GRGCYC	1 cut(s)	649
Eco47I	GGWCC	4 cut(s)	458, 523, 1157, 1889
Eco52I	CGGCCG	1 cut(s)	527
Eco53kI	GAGCTC	1 cut(s)	647
Eco57I	CTGAAG	3 cut(s)	1493, 1635, 1758
Eco81I	CCTNAGG	1 cut(s)	731
Eco88I	CYCGRG	1 cut(s)	1228
EcoICRI	GAGCTC	1 cut(s)	647
EcoO109I	RGGNCCY	3 cut(s)	953, 1157, 1889
EcoRI	GAATTC	1 cut(s)	1130
EcoRII	CCWGG	2 cut(s)	399, 1784
EcoT14I	CCWWGG	3 cut(s)	303, 1342, 2210
EcoT22I	ATGCAT	1 cut(s)	2019
EcoT38I	GRGCYC	1 cut(s)	649
EgeI	GGCGCC	1 cut(s)	663
EheI	GGCGCC	1 cut(s)	663
ErhI	CCWWGG	3 cut(s)	303, 1342, 2210
Esp3I	CGTCTC	1 cut(s)	249
FaeI	CATG	9 cut(s)	794, 836, 851, 869, 925, 1332, 2017, 2260, 2270
FaqI	GGGAC	2 cut(s)	82, 2178
FatI	CATG	9 cut(s)	790, 832, 847, 865, 921, 1328, 2013, 2256, 2266
FauI	CCCGC	3 cut(s)	60, 278, 507
FbaI	TGATCA	1 cut(s)	1900
Fnu4HI	GCNGC	7 cut(s)	160, 185, 477, 509, 512, 575, 1644
FokI	GGATG	6 cut(s)	104, 632, 704, 986, 1160, 1279
FriOI	GRGCYC	1 cut(s)	649
Fsp4HI	GCNGC	7 cut(s)	160, 185, 477, 509, 512, 575, 1644
FspBI	CTAG	3 cut(s)	336, 1814, 2042
GlaI	GCGC	5 cut(s)	222, 334, 367, 573, 663
GluI	GCNGC	7 cut(s)	160, 185, 477, 509, 512, 575, 1644
GsuI	CTGGAG	2 cut(s)	800, 1047
HaeII	RGCGCY	3 cut(s)	336, 575, 665
HaeIII	GGCC	8 cut(s)	5, 178, 241, 360, 529, 954, 2209, 2255
HgaI	GACGC	3 cut(s)	869, 1211, 2180
HhaI	GCGC	5 cut(s)	223, 335, 368, 574, 664
Hin1I	GRCGYC	2 cut(s)	662, 2191
Hin1II	CATG	9 cut(s)	794, 836, 851, 869, 925, 1332, 2017, 2260, 2270
Hin6I	GCGC	5 cut(s)	221, 333, 366, 572, 662
HinP1I	GCGC	5 cut(s)	221, 333, 366, 572, 662
HincII	GTYRAC	2 cut(s)	283, 1201
HindII	GTYRAC	2 cut(s)	283, 1201
HindIII	AAGCTT	1 cut(s)	1835
HinfI	GANTC	9 cut(s)	291, 299, 464, 787, 1766, 1851, 1868, 2087, 2308
HphI	GGTGA	4 cut(s)	49, 449, 640, 829
Hpy166II	GTNNAC	4 cut(s)	283, 346, 931, 1201
Hpy188I	TCNGA	9 cut(s)	28, 41, 143, 262, 651, 967, 1107, 1505, 2313
Hpy8I	GTNNAC	4 cut(s)	283, 346, 931, 1201
Hpy99I	CGWCG	6 cut(s)	184, 208, 262, 416, 563, 885
HpyCH4III	ACNGT	4 cut(s)	108, 458, 935, 1532
HpyCH4IV	ACGT	5 cut(s)	342, 567, 1744, 1984, 2245
HpySE526I	ACGT	5 cut(s)	342, 567, 1744, 1984, 2245
Hsp92I	GRCGYC	2 cut(s)	662, 2191
Hsp92II	CATG	9 cut(s)	794, 836, 851, 869, 925, 1332, 2017, 2260, 2270
HspAI	GCGC	5 cut(s)	221, 333, 366, 572, 662
KasI	GGCGCC	1 cut(s)	661
Kpn2I	TCCGGA	1 cut(s)	460
KroI	GCCGGC	1 cut(s)	472
KroNI	GCCGGC	1 cut(s)	474
Ksp22I	TGATCA	1 cut(s)	1900
Kzo9I	GATC	6 cut(s)	378, 741, 762, 908, 1271, 1900
LmnI	GCTCC	5 cut(s)	259, 697, 811, 1468, 1924
Lsp1109I	GCAGC	4 cut(s)	495, 523, 561, 1655
LweI	GCATC	3 cut(s)	1257, 1382, 1630
MaeI	CTAG	3 cut(s)	336, 1814, 2042
MaeII	ACGT	5 cut(s)	342, 567, 1744, 1984, 2245
MaeIII	GTNAC	3 cut(s)	1030, 1051, 1232
MalI	GATC	6 cut(s)	380, 743, 764, 910, 1273, 1902
MbiI	CCGCTC	4 cut(s)	55, 435, 483, 2115
MboI	GATC	6 cut(s)	378, 741, 762, 908, 1271, 1900
MhlI	GDGCHC	3 cut(s)	156, 256, 649
MlsI	TGGCCA	1 cut(s)	2255
MluNI	TGGCCA	1 cut(s)	2255
Mly113I	GGCGCC	1 cut(s)	662
MlyI	GAGTC	3 cut(s)	300, 308, 1845
MmeI	TCCRAC	2 cut(s)	240, 2082
Mox20I	TGGCCA	1 cut(s)	2255
Mph1103I	ATGCAT	1 cut(s)	2019
MroI	TCCGGA	1 cut(s)	460
MroNI	GCCGGC	1 cut(s)	472
MroXI	GAANNNNTTC	1 cut(s)	2142
MscI	TGGCCA	1 cut(s)	2255
MseI	TTAA	6 cut(s)	942, 1386, 1481, 1952, 2051, 2222
MslI	CAYNNNNRTG	2 cut(s)	926, 2126
Msp20I	TGGCCA	1 cut(s)	2255
MspA1I	CMGCKG	2 cut(s)	514, 1019
MspCI	CTTAAG	1 cut(s)	1951
MspR9I	CCNGG	7 cut(s)	401, 760, 1229, 1230, 1264, 1786, 2095
MvaI	CCWGG	2 cut(s)	401, 1786
MvnI	CGCG	3 cut(s)	173, 221, 368
NaeI	GCCGGC	1 cut(s)	474
NarI	GGCGCC	1 cut(s)	662
NciI	CCSGG	5 cut(s)	760, 1229, 1230, 1264, 2095
NdeII	GATC	6 cut(s)	378, 741, 762, 908, 1271, 1900
NgoMIV	GCCGGC	1 cut(s)	472
NlaIII	CATG	9 cut(s)	794, 836, 851, 869, 925, 1332, 2017, 2260, 2270
NlaIV	GGNNCC	4 cut(s)	398, 524, 663, 2216
NmeAIII	GCCGAG	3 cut(s)	348, 477, 690
NmuCI	GTSAC	1 cut(s)	1051
NsiI	ATGCAT	1 cut(s)	2019
NspI	RCATGY	1 cut(s)	2017
PagI	TCATGA	4 cut(s)	790, 832, 847, 865
PcsI	WCGNNNNNNNCGW	1 cut(s)	662
PdiI	GCCGGC	1 cut(s)	474
PdmI	GAANNNNTTC	1 cut(s)	2142
PfeI	GAWTC	6 cut(s)	464, 787, 1766, 1868, 2087, 2308
PkrI	GCNGC	7 cut(s)	161, 186, 478, 510, 513, 576, 1645
PleI	GAGTC	3 cut(s)	299, 307, 1845
PluTI	GGCGCC	1 cut(s)	665
PpsI	GAGTC	3 cut(s)	299, 307, 1845
Ppu21I	YACGTR	2 cut(s)	343, 1985
PpuMI	RGGWCCY	2 cut(s)	1157, 1889
PshBI	ATTAAT	1 cut(s)	2051
Psp124BI	GAGCTC	1 cut(s)	649
Psp1406I	AACGTT	1 cut(s)	2245
Psp5II	RGGWCCY	2 cut(s)	1157, 1889
Psp6I	CCWGG	2 cut(s)	399, 1784
PspGI	CCWGG	2 cut(s)	399, 1784
PspN4I	GGNNCC	4 cut(s)	398, 524, 663, 2216
PspPI	GGNCC	5 cut(s)	458, 523, 953, 1157, 1889
PspPPI	RGGWCCY	2 cut(s)	1157, 1889
PstI	CTGCAG	2 cut(s)	513, 1888
PstNI	CAGNNNCTG	1 cut(s)	1892
PvuII	CAGCTG	1 cut(s)	1019
RsaI	GTAC	4 cut(s)	341, 932, 1183, 1657
RsaNI	GTAC	4 cut(s)	340, 931, 1182, 1656
RseI	CAYNNNNRTG	2 cut(s)	926, 2126
Rsr2I	CGGWCCG	1 cut(s)	458
RsrII	CGGWCCG	1 cut(s)	458
SacI	GAGCTC	1 cut(s)	649
SaqAI	TTAA	6 cut(s)	942, 1386, 1481, 1952, 2051, 2222
SatI	GCNGC	7 cut(s)	160, 185, 477, 509, 512, 575, 1644
Sau3AI	GATC	6 cut(s)	378, 741, 762, 908, 1271, 1900
Sau96I	GGNCC	5 cut(s)	458, 523, 953, 1157, 1889
SbfI	CCTGCAGG	1 cut(s)	1888
SchI	GAGTC	3 cut(s)	300, 308, 1845
ScrFI	CCNGG	7 cut(s)	401, 760, 1229, 1230, 1264, 1786, 2095
SdaI	CCTGCAGG	1 cut(s)	1888
SduI	GDGCHC	3 cut(s)	156, 256, 649
SfaNI	GCATC	3 cut(s)	1257, 1382, 1630
SfcI	CTRYAG	3 cut(s)	509, 1884, 2133
SfoI	GGCGCC	1 cut(s)	663
SinI	GGWCC	4 cut(s)	458, 523, 1157, 1889
SmaI	CCCGGG	1 cut(s)	1230
SmiMI	CAYNNNNRTG	2 cut(s)	926, 2126
SmlI	CTYRAG	5 cut(s)	122, 824, 1707, 1951, 2203
SmoI	CTYRAG	5 cut(s)	122, 824, 1707, 1951, 2203
Sse8387I	CCTGCAGG	1 cut(s)	1888
SspDI	GGCGCC	1 cut(s)	661
SspI	AATATT	1 cut(s)	1514
SspMI	CTAG	3 cut(s)	336, 1814, 2042
SstI	GAGCTC	1 cut(s)	649
StyD4I	CCNGG	7 cut(s)	399, 758, 1227, 1228, 1262, 1784, 2093
StyI	CCWWGG	3 cut(s)	303, 1342, 2210
TaaI	ACNGT	4 cut(s)	108, 458, 935, 1532
TaiI	ACGT	5 cut(s)	345, 570, 1747, 1987, 2248
TaqI	TCGA	3 cut(s)	656, 883, 2007
TauI	GCSGC	3 cut(s)	162, 187, 479
TfiI	GAWTC	6 cut(s)	464, 787, 1766, 1868, 2087, 2308
Tru1I	TTAA	6 cut(s)	942, 1386, 1481, 1952, 2051, 2222
Tru9I	TTAA	6 cut(s)	942, 1386, 1481, 1952, 2051, 2222
TscAI	CASTG	2 cut(s)	751, 1921
TseFI	GTSAC	1 cut(s)	1051
TseI	GCWGC	4 cut(s)	508, 511, 574, 1643
Tsp45I	GTSAC	1 cut(s)	1051
TspDTI	ATGAA	7 cut(s)	779, 821, 869, 988, 1002, 1164, 1973
TspGWI	ACGGA	1 cut(s)	246
TspMI	CCCGGG	1 cut(s)	1228
TspRI	CASTG	2 cut(s)	751, 1921
Vha464I	CTTAAG	1 cut(s)	1951
VpaK11BI	GGWCC	4 cut(s)	458, 523, 1157, 1889
VspI	ATTAAT	1 cut(s)	2051
XapI	RAATTY	3 cut(s)	21, 1089, 1130
XceI	RCATGY	1 cut(s)	2017
XmaI	CCCGGG	1 cut(s)	1228
XmnI	GAANNNNTTC	1 cut(s)	2142
XspI	CTAG	3 cut(s)	336, 1814, 2042
Zsp2I	ATGCAT	1 cut(s)	2019

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.