Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009432

Physical Location & Seq

Genomic Coordinates Forward (+)

59361540 .. 59365480

Gene Structure 3941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0469800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGTGGGGATTTGGGGGTAGGTATTATTGGGGGAGAAAAGAGAGGAGGAGTGATGGAACTGAAGGGATAGTGGTGGTGTTTGCATGGATGTCCAGCGAAGAGAAGCATTTGAAGAGCTATGTGCAGCTCTACTCCTCTCTGGGTTGGAACTCACTCGTCTGCCACTCTCAATTTCTCAATATGTTCTTTCCTGAGAAGGCCACAGCTCTAGCAACTGATATTATAAAGGAACTGGTTCAGGAGCTGAAGGTCAAGCCTTGTCCTGTGGTCTTTGCTTCTTTCTCTGGTGGTCCAAAAGCTTGTATGTACCAAGTTCTTCAGATAATCGAGGGAATTTGTGAATCAAAACTGAATCTGGATGATTGCCGACTGGTTAGAGACTGTATATCAGGCCATATATATGATTCCAGCCCAGTGGATTTTACTAGTGATCTGGGTACTAAATTTGTTCTTCACCCAACTGTCCTGAAAATGTCCCATCCACCAAGAGTAGCATCATGGGTGGCACATGGCATTGCTTCTGGTCTTGATGCCCTCTTCCTCAACAGGTTTGAGTCACAGCGTGCTGAGTATTGGCAGACTCTCTACTCCACTGTTGGTATGAAGGCCCCGTATCTCATTTTATGCTCAGAGAATGACGATCTTGCACCCTATCAAGTTATCTGTAATTTTGCTGAACGGTTACGAGAACTTGGGGCTGATGTAAAACTAGTAAAATGGAATGGCTCTCCACACGTAGGTCATTATAGGCATTATCCAGTTGATTATAAGGCTGCTGTAACTGAGCTCCTTGGTAAAGCAGCTGGAGTCTATTCCCAGAGAATTAGACAAAGGGAAGGAGAAAGCTTGTGTGTGCAGGCAGGGCACGACGACGTTGTTGAGCCAATCAATAGCCTTAGGAAAGCTGCAGGAGCCTCAAATGGGTTCCGAGGAGTGATGTTGGCATCCAGTGATGACTTCTTGGCCACCTCAACAGAATATTACGGAGTTGGGTCTGTGCAAGATGAAGGTTTAATTCACCTGTCTGACCCACCAACGCCAACCATGAATGCCCATGGAGTTCTCGGTCAGGTTCTTTTCGACATCTGTGTTCCAAAAAACATCGAGAATTGGGATATAAAGTCATCGAGTTCTTTGAATGGGAATGGCCGCTCTTTTAGTTTTAGAAGAAGGCAAGCCCCTTTAAACCCAATCAAGTGCATACGTCGCTCCAGACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSTF2_hinge CSTF_C

Protein Analysis

406

Amino Acids

45.33

Weight (kDa)

7.96

Isoelectric Point (pI)

45.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF829	PF05705	23 - 110	2.9e-10	Eukaryotic protein of unknown function (DUF829)
DUF829	PF05705	129 - 211	4.9e-12	Eukaryotic protein of unknown function (DUF829)
DUF829	PF05705	204 - 262	7.3e-10	Eukaryotic protein of unknown function (DUF829)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18390
fragaria_vesca	FvH4_5g12070 FvH4_5g12070 FvH4_5g12070 FvH4_5g12070
malus_domestica	MD06G1216600.v1.1 MD14G1227100.v1.1
prunus_persica	Prupe.5G221800_v2.0.a1
pyrus_communis	pycom06g19300 pycom14g18850
rosa_chinensis	RchiOBHm_Chr7g0185501
rosa_laevigata	RLG00000004907
rosa_multiflora	Rmu_sc0008223.1_g000008 Rmu_sc0010190.1_g000020 Rmu_sc0042727.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268880
rosa_rugosa	Rorug06G0469800
rosa_samantha	Rh7AG072900 Rh7BG074700 Rh7CG074800 Rh7DG074700
rosa_wichuraiana	Rw7G006220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	224, 768
AccBSI	CCGCTC	1 cut(s)	1152
AciI	CCGC	1 cut(s)	1150
AcoI	YGGCCR	2 cut(s)	963, 1147
AcsI	RAATTY	2 cut(s)	333, 443
AcuI	CTGAAG	3 cut(s)	81, 266, 302
AdeI	CACNNNGTG	1 cut(s)	563
AfaI	GTAC	2 cut(s)	308, 439
AfiI	CCNNNNNNNGG	2 cut(s)	737, 921
AflIII	ACRYGT	1 cut(s)	733
AgsI	TTSAA	2 cut(s)	112, 1138
AhlI	ACTAGT	2 cut(s)	425, 709
AluBI	AGCT	9 cut(s)	117, 127, 206, 244, 299, 787, 803, 846, 905
AluI	AGCT	9 cut(s)	117, 127, 206, 244, 299, 787, 803, 846, 905
Alw21I	GWGCWC	1 cut(s)	789
Alw26I	GTCTC	1 cut(s)	372
AlwNI	CAGNNNCTG	1 cut(s)	244
AoxI	GGCC	5 cut(s)	198, 391, 606, 963, 1147
ApeKI	GCWGC	4 cut(s)	124, 773, 800, 905
ApoI	RAATTY	2 cut(s)	333, 443
Asp700I	GAANNNNTTC	1 cut(s)	234
AspS9I	GGNCC	2 cut(s)	290, 607
AsuHPI	GGTGA	2 cut(s)	446, 1010
AvaII	GGWCC	1 cut(s)	290
AxyI	CCTNAGG	1 cut(s)	896
BaeGI	GKGCMC	1 cut(s)	867
BalI	TGGCCA	1 cut(s)	965
BanII	GRGCYC	1 cut(s)	789
Bbv12I	GWGCWC	1 cut(s)	789
BbvI	GCAGC	4 cut(s)	136, 760, 812, 892
BccI	CCATC	2 cut(s)	47, 486
BcoDI	GTCTC	1 cut(s)	372
BcuI	ACTAGT	2 cut(s)	425, 709
BfaI	CTAG	3 cut(s)	209, 426, 710
BfmI	CTRYAG	1 cut(s)	906
BisI	GCNGC	5 cut(s)	125, 774, 801, 906, 1150
BlsI	GCNGC	5 cut(s)	126, 775, 802, 907, 1151
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	2 cut(s)	290, 607
BmiI	GGNNCC	3 cut(s)	609, 913, 926
BmrI	ACTGGG	1 cut(s)	407
BmsI	GCATC	3 cut(s)	503, 520, 953
BmuI	ACTGGG	1 cut(s)	407
BpmI	CTGGAG	2 cut(s)	825, 1195
BsaAI	YACGTR	1 cut(s)	736
BsaJI	CCNNGG	3 cut(s)	790, 928, 1054
Bsc4I	CCNNNNNNNGG	2 cut(s)	737, 921
Bse1I	ACTGG	5 cut(s)	237, 375, 413, 758, 948
Bse21I	CCTNAGG	1 cut(s)	896
Bse3DI	GCAATG	1 cut(s)	513
BseDI	CCNNGG	3 cut(s)	790, 928, 1054
BseGI	GGATG	4 cut(s)	93, 364, 478, 944
BseLI	CCNNNNNNNGG	2 cut(s)	737, 921
BseMI	GCAATG	1 cut(s)	513
BseMII	CTCAG	4 cut(s)	183, 558, 642, 774
BseNI	ACTGG	5 cut(s)	237, 375, 413, 758, 948
BseRI	GAGGAG	4 cut(s)	58, 61, 124, 945
BseSI	GKGCMC	1 cut(s)	867
BseXI	GCAGC	4 cut(s)	136, 760, 812, 892
BsgI	GTGCAG	2 cut(s)	143, 875
BshFI	GGCC	5 cut(s)	200, 393, 608, 965, 1149
BsiHKAI	GWGCWC	1 cut(s)	789
BslFI	GGGAC	1 cut(s)	460
BslI	CCNNNNNNNGG	2 cut(s)	737, 921
BsmAI	GTCTC	1 cut(s)	372
BsmFI	GGGAC	1 cut(s)	460
BsmI	GAATGC	1 cut(s)	1054
BsnI	GGCC	5 cut(s)	200, 393, 608, 965, 1149
Bsp1286I	GDGCHC	2 cut(s)	789, 867
Bsp143I	GATC	2 cut(s)	430, 640
Bsp19I	CCATGG	1 cut(s)	1054
BspACI	CCGC	1 cut(s)	1150
BspANI	GGCC	5 cut(s)	200, 393, 608, 965, 1149
BspCNI	CTCAG	4 cut(s)	184, 559, 641, 775
BspLI	GGNNCC	3 cut(s)	609, 913, 926
BspMAI	CTGCAG	1 cut(s)	910
BspQI	GCTCTTC	1 cut(s)	107
BsrBI	CCGCTC	1 cut(s)	1152
BsrDI	GCAATG	1 cut(s)	513
BsrI	ACTGG	5 cut(s)	237, 375, 413, 758, 948
BssECI	CCNNGG	3 cut(s)	790, 928, 1054
BssMI	GATC	2 cut(s)	430, 640
BssT1I	CCWWGG	2 cut(s)	790, 1054
Bst4CI	ACNGT	4 cut(s)	383, 463, 595, 681
Bst6I	CTCTTC	3 cut(s)	93, 107, 542
BstBAI	YACGTR	1 cut(s)	736
BstC8I	GCNNGC	3 cut(s)	564, 858, 1176
BstDEI	CTNAG	5 cut(s)	192, 567, 628, 783, 896
BstDSI	CCRYGG	1 cut(s)	1054
BstF5I	GGATG	4 cut(s)	93, 364, 478, 944
BstKTI	GATC	2 cut(s)	433, 643
BstMAI	GTCTC	1 cut(s)	372
BstMBI	GATC	2 cut(s)	430, 640
BstMWI	GCNNNNNNNGC	3 cut(s)	862, 911, 1206
BstSFI	CTRYAG	1 cut(s)	906
BstSLI	GKGCMC	1 cut(s)	867
BstV1I	GCAGC	4 cut(s)	136, 760, 812, 892
BstXI	CCANNNNNNTGG	1 cut(s)	415
Bsu36I	CCTNAGG	1 cut(s)	896
BsuRI	GGCC	5 cut(s)	200, 393, 608, 965, 1149
BtgI	CCRYGG	1 cut(s)	1054
BtsCI	GGATG	4 cut(s)	93, 364, 478, 944
BtsIMutI	CAGTG	3 cut(s)	420, 591, 955
Cac8I	GCNNGC	3 cut(s)	564, 858, 1176
CaiI	CAGNNNCTG	1 cut(s)	244
Cfr13I	GGNCC	2 cut(s)	290, 607
Csp6I	GTAC	2 cut(s)	307, 438
CviAII	CATG	5 cut(s)	84, 498, 509, 1045, 1055
CviQI	GTAC	2 cut(s)	307, 438
DdeI	CTNAG	5 cut(s)	192, 567, 628, 783, 896
DpnI	GATC	2 cut(s)	432, 642
DpnII	GATC	2 cut(s)	430, 640
DraI	TTTAAA	1 cut(s)	1185
DraIII	CACNNNGTG	1 cut(s)	563
EaeI	YGGCCR	2 cut(s)	963, 1147
Eam1104I	CTCTTC	3 cut(s)	93, 107, 542
EarI	CTCTTC	3 cut(s)	93, 107, 542
Ecl136II	GAGCTC	1 cut(s)	787
Eco130I	CCWWGG	2 cut(s)	790, 1054
Eco24I	GRGCYC	1 cut(s)	789
Eco47I	GGWCC	1 cut(s)	290
Eco53kI	GAGCTC	1 cut(s)	787
Eco57I	CTGAAG	3 cut(s)	81, 266, 302
Eco81I	CCTNAGG	1 cut(s)	896
EcoICRI	GAGCTC	1 cut(s)	787
EcoO109I	RGGNCCY	1 cut(s)	607
EcoT14I	CCWWGG	2 cut(s)	790, 1054
EcoT38I	GRGCYC	1 cut(s)	789
ErhI	CCWWGG	2 cut(s)	790, 1054
FaeI	CATG	5 cut(s)	87, 501, 512, 1048, 1058
FaqI	GGGAC	1 cut(s)	460
FatI	CATG	5 cut(s)	83, 497, 508, 1044, 1054
Fnu4HI	GCNGC	5 cut(s)	125, 774, 801, 906, 1150
FokI	GGATG	4 cut(s)	100, 371, 465, 931
FriOI	GRGCYC	1 cut(s)	789
Fsp4HI	GCNGC	5 cut(s)	125, 774, 801, 906, 1150
FspBI	CTAG	3 cut(s)	209, 426, 710
GluI	GCNGC	5 cut(s)	125, 774, 801, 906, 1150
GsuI	CTGGAG	2 cut(s)	825, 1195
HaeIII	GGCC	5 cut(s)	200, 393, 608, 965, 1149
Hin1II	CATG	5 cut(s)	87, 501, 512, 1048, 1058
HindIII	AAGCTT	2 cut(s)	297, 844
HinfI	GANTC	6 cut(s)	341, 352, 404, 554, 580, 807
HphI	GGTGA	2 cut(s)	446, 1010
Hpy188I	TCNGA	4 cut(s)	321, 631, 929, 1027
Hpy188III	TCNNGA	7 cut(s)	191, 239, 356, 466, 527, 1105, 1212
Hpy99I	CGWCG	3 cut(s)	872, 875, 1209
HpyAV	CCTTC	7 cut(s)	56, 190, 241, 598, 830, 1001, 1164
HpyCH4III	ACNGT	4 cut(s)	383, 463, 595, 681
HpyCH4IV	ACGT	3 cut(s)	735, 873, 1204
HpyCH4V	TGCA	7 cut(s)	83, 124, 647, 856, 908, 1000, 1200
HpyF10VI	GCNNNNNNNGC	3 cut(s)	862, 911, 1206
HpyF3I	CTNAG	5 cut(s)	192, 567, 628, 783, 896
HpySE526I	ACGT	3 cut(s)	735, 873, 1204
Hsp92II	CATG	5 cut(s)	87, 501, 512, 1048, 1058
Kzo9I	GATC	2 cut(s)	430, 640
LguI	GCTCTTC	1 cut(s)	107
LmnI	GCTCC	4 cut(s)	241, 792, 911, 1214
Lsp1109I	GCAGC	4 cut(s)	136, 760, 812, 892
LweI	GCATC	3 cut(s)	503, 520, 953
MaeI	CTAG	3 cut(s)	209, 426, 710
MaeII	ACGT	3 cut(s)	735, 873, 1204
MaeIII	GTNAC	3 cut(s)	555, 681, 778
MalI	GATC	2 cut(s)	432, 642
MbiI	CCGCTC	1 cut(s)	1152
MboI	GATC	2 cut(s)	430, 640
MboII	GAAGA	6 cut(s)	110, 124, 308, 443, 529, 1179
MhlI	GDGCHC	2 cut(s)	789, 867
MlsI	TGGCCA	1 cut(s)	965
MluCI	AATT	7 cut(s)	170, 333, 443, 667, 822, 1014, 1108
MluNI	TGGCCA	1 cut(s)	965
MlyI	GAGTC	3 cut(s)	563, 574, 816
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	9 cut(s)	36, 39, 145, 322, 545, 551, 923, 925, 979
Mox20I	TGGCCA	1 cut(s)	965
MroXI	GAANNNNTTC	1 cut(s)	234
MscI	TGGCCA	1 cut(s)	965
MseI	TTAA	2 cut(s)	1013, 1184
MslI	CAYNNNNRTG	1 cut(s)	399
Msp20I	TGGCCA	1 cut(s)	965
MspA1I	CMGCKG	1 cut(s)	803
Mva1269I	GAATGC	1 cut(s)	1054
MwoI	GCNNNNNNNGC	3 cut(s)	862, 911, 1206
NcoI	CCATGG	1 cut(s)	1054
NdeII	GATC	2 cut(s)	430, 640
NlaIII	CATG	5 cut(s)	87, 501, 512, 1048, 1058
NlaIV	GGNNCC	3 cut(s)	609, 913, 926
NmuCI	GTSAC	1 cut(s)	555
PciSI	GCTCTTC	1 cut(s)	107
PctI	GAATGC	1 cut(s)	1054
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	3 cut(s)	341, 352, 404
PkrI	GCNGC	5 cut(s)	126, 775, 802, 907, 1151
PleI	GAGTC	3 cut(s)	562, 574, 815
PpsI	GAGTC	3 cut(s)	562, 574, 815
Ppu21I	YACGTR	1 cut(s)	736
PsiI	TTATAA	2 cut(s)	224, 768
Psp124BI	GAGCTC	1 cut(s)	789
PspN4I	GGNNCC	3 cut(s)	609, 913, 926
PspPI	GGNCC	2 cut(s)	290, 607
PstI	CTGCAG	1 cut(s)	910
PstNI	CAGNNNCTG	1 cut(s)	244
PvuII	CAGCTG	1 cut(s)	803
RsaI	GTAC	2 cut(s)	308, 439
RsaNI	GTAC	2 cut(s)	307, 438
RseI	CAYNNNNRTG	1 cut(s)	399
SacI	GAGCTC	1 cut(s)	789
SapI	GCTCTTC	1 cut(s)	107
SaqAI	TTAA	2 cut(s)	1013, 1184
SatI	GCNGC	5 cut(s)	125, 774, 801, 906, 1150
Sau3AI	GATC	2 cut(s)	430, 640
Sau96I	GGNCC	2 cut(s)	290, 607
SchI	GAGTC	3 cut(s)	563, 574, 816
SduI	GDGCHC	2 cut(s)	789, 867
SfaNI	GCATC	3 cut(s)	503, 520, 953
SfcI	CTRYAG	1 cut(s)	906
SinI	GGWCC	1 cut(s)	290
SmiMI	CAYNNNNRTG	1 cut(s)	399
SpeI	ACTAGT	2 cut(s)	425, 709
Sse9I	AATT	7 cut(s)	170, 333, 443, 667, 822, 1014, 1108
SsiI	CCGC	1 cut(s)	1150
SspI	AATATT	1 cut(s)	980
SspMI	CTAG	3 cut(s)	209, 426, 710
SstI	GAGCTC	1 cut(s)	789
StyI	CCWWGG	2 cut(s)	790, 1054
TaaI	ACNGT	4 cut(s)	383, 463, 595, 681
TaiI	ACGT	3 cut(s)	738, 876, 1207
TaqI	TCGA	4 cut(s)	327, 1080, 1104, 1127
TaqII	GACCGA	1 cut(s)	1055
TasI	AATT	7 cut(s)	170, 333, 443, 667, 822, 1014, 1108
TauI	GCSGC	1 cut(s)	1152
TfiI	GAWTC	3 cut(s)	341, 352, 404
Tru1I	TTAA	2 cut(s)	1013, 1184
Tru9I	TTAA	2 cut(s)	1013, 1184
TscAI	CASTG	3 cut(s)	420, 598, 955
TseFI	GTSAC	1 cut(s)	555
TseI	GCWGC	4 cut(s)	124, 773, 800, 905
Tsp45I	GTSAC	1 cut(s)	555
TspDTI	ATGAA	3 cut(s)	617, 1020, 1061
TspGWI	ACGGA	1 cut(s)	999
TspRI	CASTG	3 cut(s)	420, 598, 955
VpaK11BI	GGWCC	1 cut(s)	290
XapI	RAATTY	2 cut(s)	333, 443
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	3 cut(s)	209, 426, 710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.