Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009107.1

Orthogroup ID

OG0011207

Physical Location & Seq

Genomic Coordinates Reverse (-)

11546 .. 14146

Gene Structure 2601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009107.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

atggggatcagcagagagaatgatcagaacgacttggaaattggtctttcactgaaaattgatcaccctcctaaaaaagaagaagaagaagaagatggcaacgacgacgaagacgaagtccacgaggatatcgaagaagaatcagcagcagaagaagaagagatcaaagaggataatattgaagaagaaccaaaagcggctgcaggtgaagtggatgatgatgcctcagtagtactggagacaacaaacttgcatgagaataacttgaagacagatcaggagttatgcgctttgcaaatggagatgagtcgcatgaaagaagaaaataatgttttgaggaaggtcgtggagcaaaccatgaaggattattacgatcttcaaatgaaattcacagctgtccatcaaaatagccaaaccaaggatcctcagacctttttatcgcttcgtggtaatgatcatgatgaagctgatcctccaaaaagtagtattcccaagatgtcggaaattcgttgtcatagatctacatcaccggcacgtgaggatgatatcataaaagagagtcaactagggctgtcactgaggctacaaaccaatgaatttagggatcagagagaagatcacgatatccaagaacgtaacaaggaagaattgacgagtagtagtctcacatcatcagtgcaacacaagctgcagcggaccgatttggccggaattactagccatgccgcccaagccaacagaaaagctagggtttcggttagagcaagatgtgaatctgccacaatgaatgatgggtgtcaatggaggaaatatgggcagaaaatcgcgaaaggaaacccttgccccagagcctattaccgttgcacagtagctcctggatgtcctgttagaaaacaggtccaaagatgcctagaggacatgtccatactgataacaacatacgaaggaacacataatcatccacttccagttggtgcaactgccatggcttccacagcttctgcagcagctgcttcctttatgttactagattcaagcaaccaccatctctcagatggaacactaccctcctctaatttcatgacccaagcctccctccctcccaataattactacaacacccctcaccacatgttaaacaacctctacccctcatcaatatctcatcaatattcctcctcatcaaacttccgaaccctaaattccgttcatcatcagcctcatcatgacccttcaaaaggaatcgttctcgacctcaccaacaacttcagtgatacttctactagtactgccttcaaaggcggcgggatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

437

Amino Acids

48.98

Weight (kDa)

5.09

Isoelectric Point (pI)

51.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68150
fragaria_vesca	FvH4_5g29820 FvH4_5g29820 FvH4_5g29820
malus_domestica	MD08G1227200.v1.1 MD15G1419600.v1.1
prunus_persica	Prupe.1G564300_v2.0.a1
pyrus_communis	pycom08g19820
rosa_chinensis	RchiOBHm_Chr7g0223361
rosa_laevigata	RLG00000001986
rosa_multiflora	Rmu_sc0005124.1_g000024 Rmu_sc0009107.1_g000007
rosa_roxburghii	Rroxscaffold_3G00235870
rosa_rugosa	Rorug07G0216200 Rorug07G0216300
rosa_samantha	Rh7AG360000 Rh7BG349800 Rh7CG378400 Rh7DG355200
rosa_wichuraiana	Rw7G030590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	194
Acc36I	ACCTGC	1 cut(s)	194
AccII	CGCG	1 cut(s)	827
AciI	CCGC	5 cut(s)	197, 694, 726, 1302, 1305
AclWI	GGATC	5 cut(s)	14, 416, 429, 464, 612
AcoI	YGGCCR	1 cut(s)	705
AcsI	RAATTY	4 cut(s)	386, 504, 596, 1201
AcuI	CTGAAG	1 cut(s)	1252
AcvI	CACGTG	1 cut(s)	536
AfaI	GTAC	2 cut(s)	234, 1288
AfiI	CCNNNNNNNGG	2 cut(s)	418, 1238
AflIII	ACRYGT	2 cut(s)	918, 1131
AgsI	TTSAA	6 cut(s)	182, 268, 380, 1035, 1236, 1297
AhlI	ACTAGT	1 cut(s)	1283
AjnI	CCWGG	1 cut(s)	874
AluBI	AGCT	7 cut(s)	395, 467, 688, 746, 872, 998, 1010
AluI	AGCT	7 cut(s)	395, 467, 688, 746, 872, 998, 1010
Alw26I	GTCTC	2 cut(s)	233, 668
AlwI	GGATC	5 cut(s)	14, 416, 429, 464, 612
AlwNI	CAGNNNCTG	2 cut(s)	1001, 1010
AoxI	GGCC	1 cut(s)	705
ApeKI	GCWGC	7 cut(s)	146, 200, 688, 691, 1004, 1007, 1010
ApoI	RAATTY	4 cut(s)	386, 504, 596, 1201
ArsI	GACNNNNNNTTYG	2 cut(s)	102, 134
AspLEI	GCGC	1 cut(s)	290
AspS9I	GGNCC	2 cut(s)	696, 898
AsuHPI	GGTGA	5 cut(s)	56, 218, 519, 1118, 1249
AvaII	GGWCC	2 cut(s)	696, 898
BamHI	GGATCC	1 cut(s)	421
BarI	GAAGNNNNNNTAC	2 cut(s)	353, 385
BauI	CACGAG	1 cut(s)	122
BbrPI	CACGTG	1 cut(s)	536
BbsI	GAAGAC	2 cut(s)	117, 275
BbvI	GCAGC	7 cut(s)	158, 187, 675, 703, 997, 1016, 1019
BccI	CCATC	5 cut(s)	89, 408, 785, 1049, 1053
BciT130I	CCWGG	1 cut(s)	876
BclI	TGATCA	3 cut(s)	22, 61, 454
BcoDI	GTCTC	2 cut(s)	233, 668
BcuI	ACTAGT	1 cut(s)	1283
BfaI	CTAG	6 cut(s)	566, 717, 747, 911, 1028, 1284
BfmI	CTRYAG	3 cut(s)	201, 689, 1002
BfuAI	ACCTGC	1 cut(s)	194
BglII	AGATCT	1 cut(s)	518
BmcAI	AGTACT	2 cut(s)	234, 1288
Bme1390I	CCNGG	1 cut(s)	876
Bme18I	GGWCC	2 cut(s)	696, 898
BmgT120I	GGNCC	2 cut(s)	696, 898
BmiI	GGNNCC	1 cut(s)	423
BmrFI	CCNGG	1 cut(s)	876
BmsI	GCATC	2 cut(s)	211, 896
BpiI	GAAGAC	2 cut(s)	117, 275
BpmI	CTGGAG	1 cut(s)	257
BsaAI	YACGTR	1 cut(s)	536
BsaBI	GATNNNNATC	2 cut(s)	523, 772
BsaJI	CCNNGG	2 cut(s)	417, 984
BsaXI	ACNNNNNCTCC	2 cut(s)	856, 886
Bsc4I	CCNNNNNNNGG	2 cut(s)	418, 1238
Bse118I	RCCGGY	1 cut(s)	529
Bse1I	ACTGG	2 cut(s)	240, 968
Bse8I	GATNNNNATC	2 cut(s)	523, 772
BseBI	CCWGG	1 cut(s)	876
BseDI	CCNNGG	2 cut(s)	417, 984
BseGI	GGATG	4 cut(s)	220, 547, 884, 958
BseJI	GATNNNNATC	2 cut(s)	523, 772
BseLI	CCNNNNNNNGG	2 cut(s)	418, 1238
BseMII	CTCAG	4 cut(s)	240, 440, 569, 1065
BseNI	ACTGG	2 cut(s)	240, 968
BseRI	GAGGAG	2 cut(s)	1060, 1168
BseXI	GCAGC	7 cut(s)	158, 187, 675, 703, 997, 1016, 1019
Bsh1236I	CGCG	1 cut(s)	827
BshFI	GGCC	1 cut(s)	707
BsiSI	CCGG	2 cut(s)	530, 708
BslI	CCNNNNNNNGG	2 cut(s)	418, 1238
BsmAI	GTCTC	2 cut(s)	233, 668
BsnI	GGCC	1 cut(s)	707
Bsp19I	CCATGG	1 cut(s)	984
Bsp68I	TCGCGA	1 cut(s)	827
BspACI	CCGC	5 cut(s)	197, 694, 726, 1302, 1305
BspANI	GGCC	1 cut(s)	707
BspCNI	CTCAG	4 cut(s)	239, 439, 570, 1064
BspFNI	CGCG	1 cut(s)	827
BspHI	TCATGA	3 cut(s)	457, 1080, 1225
BspLI	GGNNCC	1 cut(s)	423
BspMAI	CTGCAG	3 cut(s)	205, 693, 1006
BspMI	ACCTGC	1 cut(s)	194
BspPI	GGATC	5 cut(s)	14, 416, 429, 464, 612
BsrFI	RCCGGY	1 cut(s)	529
BsrI	ACTGG	2 cut(s)	240, 968
BssAI	RCCGGY	1 cut(s)	529
BssECI	CCNNGG	2 cut(s)	417, 984
BssSI	CACGAG	1 cut(s)	122
BssT1I	CCWWGG	2 cut(s)	417, 984
Bst2BI	CACGAG	1 cut(s)	122
Bst2UI	CCWGG	1 cut(s)	876
Bst4CI	ACNGT	2 cut(s)	860, 868
Bst6I	CTCTTC	1 cut(s)	153
BstAPI	GCANNNNNTGC	1 cut(s)	1010
BstBAI	YACGTR	1 cut(s)	536
BstDEI	CTNAG	4 cut(s)	226, 426, 578, 1051
BstDSI	CCRYGG	1 cut(s)	984
BstENI	CCTNNNNNAGG	1 cut(s)	1236
BstF5I	GGATG	4 cut(s)	220, 547, 884, 958
BstFNI	CGCG	1 cut(s)	827
BstHHI	GCGC	1 cut(s)	290
BstMAI	GTCTC	2 cut(s)	233, 668
BstMWI	GCNNNNNNNGC	5 cut(s)	685, 731, 995, 1004, 1010
BstNI	CCWGG	1 cut(s)	876
BstNSI	RCATGY	2 cut(s)	922, 1135
BstSCI	CCNGG	1 cut(s)	874
BstSFI	CTRYAG	3 cut(s)	201, 689, 1002
BstUI	CGCG	1 cut(s)	827
BstV1I	GCAGC	7 cut(s)	158, 187, 675, 703, 997, 1016, 1019
BstV2I	GAAGAC	2 cut(s)	117, 275
BstX2I	RGATCY	2 cut(s)	421, 518
BstYI	RGATCY	2 cut(s)	421, 518
BsuRI	GGCC	1 cut(s)	707
BtgI	CCRYGG	1 cut(s)	984
BtsCI	GGATG	4 cut(s)	220, 547, 884, 958
BtsIMutI	CAGTG	4 cut(s)	50, 575, 681, 1276
BtuMI	TCGCGA	1 cut(s)	827
BveI	ACCTGC	1 cut(s)	194
CaiI	CAGNNNCTG	2 cut(s)	1001, 1010
CciI	TCATGA	3 cut(s)	457, 1080, 1225
CfoI	GCGC	1 cut(s)	290
Cfr10I	RCCGGY	1 cut(s)	529
Cfr13I	GGNCC	2 cut(s)	696, 898
CpoI	CGGWCCG	1 cut(s)	696
Csp6I	GTAC	2 cut(s)	233, 1287
CspI	CGGWCCG	1 cut(s)	696
CviQI	GTAC	2 cut(s)	233, 1287
DdeI	CTNAG	4 cut(s)	226, 426, 578, 1051
EaeI	YGGCCR	1 cut(s)	705
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco130I	CCWWGG	2 cut(s)	417, 984
Eco32I	GATATC	3 cut(s)	130, 547, 625
Eco47I	GGWCC	2 cut(s)	696, 898
Eco57I	CTGAAG	1 cut(s)	1252
Eco72I	CACGTG	1 cut(s)	536
EcoNI	CCTNNNNNAGG	1 cut(s)	1236
EcoRII	CCWGG	1 cut(s)	874
EcoRV	GATATC	3 cut(s)	130, 547, 625
EcoT14I	CCWWGG	2 cut(s)	417, 984
ErhI	CCWWGG	2 cut(s)	417, 984
FauI	CCCGC	1 cut(s)	1298
FbaI	TGATCA	3 cut(s)	22, 61, 454
FokI	GGATG	4 cut(s)	227, 554, 891, 945
FspBI	CTAG	6 cut(s)	566, 717, 747, 911, 1028, 1284
GlaI	GCGC	1 cut(s)	289
GsuI	CTGGAG	1 cut(s)	257
HaeIII	GGCC	1 cut(s)	707
HapII	CCGG	2 cut(s)	530, 708
HhaI	GCGC	1 cut(s)	290
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HincII	GTYRAC	1 cut(s)	563
HindII	GTYRAC	1 cut(s)	563
HinfI	GANTC	6 cut(s)	140, 307, 559, 773, 1031, 1242
HpaII	CCGG	2 cut(s)	530, 708
HphI	GGTGA	5 cut(s)	56, 218, 519, 1118, 1249
Hpy166II	GTNNAC	2 cut(s)	121, 563
Hpy188I	TCNGA	6 cut(s)	27, 429, 502, 609, 1054, 1193
Hpy188III	TCNNGA	7 cut(s)	278, 458, 620, 826, 1081, 1226, 1250
Hpy8I	GTNNAC	2 cut(s)	121, 563
Hpy99I	CGWCG	2 cut(s)	107, 110
HpyAV	CCTTC	5 cut(s)	334, 355, 938, 1242, 1303
HpyCH4III	ACNGT	2 cut(s)	860, 868
HpyCH4IV	ACGT	2 cut(s)	535, 634
HpyCH4V	TGCA	8 cut(s)	203, 253, 295, 679, 691, 864, 977, 1004
HpyF10VI	GCNNNNNNNGC	5 cut(s)	685, 731, 995, 1004, 1010
HpyF3I	CTNAG	4 cut(s)	226, 426, 578, 1051
HpySE526I	ACGT	2 cut(s)	535, 634
HspAI	GCGC	1 cut(s)	288
Ksp22I	TGATCA	3 cut(s)	22, 61, 454
LmnI	GCTCC	2 cut(s)	349, 877
Lsp1109I	GCAGC	7 cut(s)	158, 187, 675, 703, 997, 1016, 1019
LweI	GCATC	2 cut(s)	211, 896
MaeI	CTAG	6 cut(s)	566, 717, 747, 911, 1028, 1284
MaeII	ACGT	2 cut(s)	535, 634
MaeIII	GTNAC	3 cut(s)	573, 635, 1023
MflI	RGATCY	2 cut(s)	421, 518
MlyI	GAGTC	2 cut(s)	316, 568
MmeI	TCCRAC	1 cut(s)	480
MseI	TTAA	1 cut(s)	1136
MspA1I	CMGCKG	3 cut(s)	395, 694, 1010
MspI	CCGG	2 cut(s)	530, 708
MspR9I	CCNGG	1 cut(s)	876
MvaI	CCWGG	1 cut(s)	876
MvnI	CGCG	1 cut(s)	827
MwoI	GCNNNNNNNGC	5 cut(s)	685, 731, 995, 1004, 1010
NcoI	CCATGG	1 cut(s)	984
NlaIV	GGNNCC	1 cut(s)	423
NmuCI	GTSAC	1 cut(s)	573
NruI	TCGCGA	1 cut(s)	827
NspI	RCATGY	2 cut(s)	922, 1135
PagI	TCATGA	3 cut(s)	457, 1080, 1225
PaqCI	CACCTGC	1 cut(s)	194
PciI	ACATGT	2 cut(s)	918, 1131
PcsI	WCGNNNNNNNCGW	3 cut(s)	111, 120, 129
PfeI	GAWTC	4 cut(s)	140, 773, 1031, 1242
PflFI	GACNNNGTC	1 cut(s)	116
PfoI	TCCNGGA	1 cut(s)	874
PleI	GAGTC	2 cut(s)	315, 567
PmaCI	CACGTG	1 cut(s)	536
PmlI	CACGTG	1 cut(s)	536
PpsI	GAGTC	2 cut(s)	315, 567
Ppu21I	YACGTR	1 cut(s)	536
PscI	ACATGT	2 cut(s)	918, 1131
Psp6I	CCWGG	1 cut(s)	874
PspCI	CACGTG	1 cut(s)	536
PspGI	CCWGG	1 cut(s)	874
PspN4I	GGNNCC	1 cut(s)	423
PspPI	GGNCC	2 cut(s)	696, 898
PstI	CTGCAG	3 cut(s)	205, 693, 1006
PstNI	CAGNNNCTG	2 cut(s)	1001, 1010
PsuI	RGATCY	2 cut(s)	421, 518
PsyI	GACNNNGTC	1 cut(s)	116
PvuII	CAGCTG	2 cut(s)	395, 1010
RruI	TCGCGA	1 cut(s)	827
RsaI	GTAC	2 cut(s)	234, 1288
RsaNI	GTAC	2 cut(s)	233, 1287
Rsr2I	CGGWCCG	1 cut(s)	696
RsrII	CGGWCCG	1 cut(s)	696
SaqAI	TTAA	1 cut(s)	1136
Sau96I	GGNCC	2 cut(s)	696, 898
ScaI	AGTACT	2 cut(s)	234, 1288
SchI	GAGTC	2 cut(s)	316, 568
ScrFI	CCNGG	1 cut(s)	876
SfaNI	GCATC	2 cut(s)	211, 896
SfcI	CTRYAG	3 cut(s)	201, 689, 1002
SinI	GGWCC	2 cut(s)	696, 898
SpeI	ACTAGT	1 cut(s)	1283
SsiI	CCGC	5 cut(s)	197, 694, 726, 1302, 1305
SspI	AATATT	2 cut(s)	178, 1172
SspMI	CTAG	6 cut(s)	566, 717, 747, 911, 1028, 1284
StyD4I	CCNGG	1 cut(s)	874
StyI	CCWWGG	2 cut(s)	417, 984
TaaI	ACNGT	2 cut(s)	860, 868
TaiI	ACGT	2 cut(s)	538, 637
TaqI	TCGA	2 cut(s)	132, 1251
TaqII	GACCGA	1 cut(s)	713
TatI	WGTACW	2 cut(s)	232, 1286
TauI	GCSGC	3 cut(s)	200, 728, 1305
TfiI	GAWTC	4 cut(s)	140, 773, 1031, 1242
Tru1I	TTAA	1 cut(s)	1136
Tru9I	TTAA	1 cut(s)	1136
TscAI	CASTG	4 cut(s)	57, 582, 681, 1276
TseFI	GTSAC	1 cut(s)	573
TseI	GCWGC	7 cut(s)	146, 200, 688, 691, 1004, 1007, 1010
Tsp45I	GTSAC	1 cut(s)	573
TspDTI	ATGAA	8 cut(s)	329, 374, 398, 477, 609, 800, 1069, 1199
TspGWI	ACGGA	1 cut(s)	1195
TspRI	CASTG	4 cut(s)	57, 582, 681, 1276
Tth111I	GACNNNGTC	1 cut(s)	116
VpaK11BI	GGWCC	2 cut(s)	696, 898
XagI	CCTNNNNNAGG	1 cut(s)	1236
XapI	RAATTY	4 cut(s)	386, 504, 596, 1201
XceI	RCATGY	2 cut(s)	922, 1135
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1052
XspI	CTAG	6 cut(s)	566, 717, 747, 911, 1028, 1284
ZrmI	AGTACT	2 cut(s)	234, 1288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.