Rorug07G0216300
WRKY Family

WRKY transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0011207
Physical Location & Seq
Reverse (-)
19214647 .. 19251447
36801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0216300.1

Sequence Viewer

Length: 909 bp
ATGAATCAAGCTTTTCTCCTCATTCTCACCACACTAACTGTTTCAGGCTTGATCAACTTGGCAGTGGCTGAAGGTGGGTTTTGCTCTGCTGCTCCTTCAATCATCGACTCGGGTTCGGACACCAATCAGCTGTATTGGAAGGCCACCAATCCCACACTCTCTCCTTCTCATCTTCAAGACCTGCCAGGTTTCACACGAAGTGTCTACAAAAGAGACCATGCTTTAATTACACCAGAAAGTCATGTCTTTAGCCCTTTACCTGAGTGGACCCTGACATCAGGAGCGTATTTGATCACACCTGCAATGGGCTCTCACTTTGTAATGTACCTAGCAAAGATGCAAGAGAACTCGCAGTCTGGACTTCCCCCAAATGATGCAGAAAGGTTCATATTTGTGGTTCAGGGTGCTGTGACCTTAACTAATACTTCTGGTATTAGCCAGAAATTAATGGTGGACTCATATGCTTATCTACCTCCTAATTTTCACCATTCCATTAGGTGTGATGCATCTGCTACCCTTGTGGTTTTTGAAAGAAGGCGTTCCTCTCTGGATAATCTACATACTGAGCAGATTGTTGGTTCAACAGACCAGCAGCCACTCCTGGAAACTCCAGGCGAGGTCTTTCAACTAAGGAAGCTTATTCCAACTTCTGTATCATATGACTTCAACATCCATATTATGGATTTCCAGCCTGGGGAATATCTTAATGTGAAGGAGGTGCATTACAATCAGCATGGTTTATTGCTTCTGGAGGGACAGGGCATTTATCGGTTAGGTGATAGCTGGTACCCTGTTCAGGCAGGAGATGTCATTTGGATGGCGCCATTTGTGCCACAGTGGTATGCTGCATTGGGTAAAACTCGGTCACGATATTTGCTGTACAAAGATGTAAATAGGAATCCATTGTAG

Protein Analysis

302

Amino Acids

33.77

Weight (kDa)

5.9

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_2 PF07883 226 - 292 5.8e-07 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011207)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68150
fragaria_vesca FvH4_5g29820 FvH4_5g29820 FvH4_5g29820
malus_domestica MD08G1227200.v1.1 MD15G1419600.v1.1
prunus_persica Prupe.1G564300_v2.0.a1
pyrus_communis pycom08g19820
rosa_chinensis RchiOBHm_Chr7g0223361
rosa_laevigata RLG00000001986
rosa_multiflora Rmu_sc0005124.1_g000024 Rmu_sc0009107.1_g000007
rosa_roxburghii Rroxscaffold_3G00235870
rosa_rugosa Rorug07G0216200 Rorug07G0216300
rosa_samantha Rh7AG360000 Rh7BG349800 Rh7CG378400 Rh7DG355200
rosa_wichuraiana Rw7G030590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 307
Acc36I ACCTGC 2 cut(s) 189, 307
Acc65I GGTACC 1 cut(s) 786
AccB1I GGYRCC 2 cut(s) 786, 820
AccB7I CCANNNNNTGG 1 cut(s) 679
AccI GTMKAC 1 cut(s) 204
AcuI CTGAAG 1 cut(s) 90
AcyI GRCGYC 1 cut(s) 821
AdeI CACNNNGTG 1 cut(s) 200
AfaI GTAC 3 cut(s) 326, 788, 881
AfiI CCNNNNNNNGG 4 cut(s) 305, 679, 694, 796
AgsI TTSAA 6 cut(s) 99, 176, 530, 582, 626, 667
AjnI CCWGG 4 cut(s) 184, 600, 610, 691
AluBI AGCT 4 cut(s) 11, 130, 637, 783
AluI AGCT 4 cut(s) 11, 130, 637, 783
Alw26I GTCTC 1 cut(s) 207
AlwNI CAGNNNCTG 1 cut(s) 68
Ama87I CYCGRG 1 cut(s) 109
AoxI GGCC 1 cut(s) 141
ApeKI GCWGC 3 cut(s) 89, 592, 845
AseI ATTAAT 1 cut(s) 446
Asp700I GAANNNNTTC 1 cut(s) 538
Asp718I GGTACC 1 cut(s) 786
AspLEI GCGC 1 cut(s) 823
AspS9I GGNCC 1 cut(s) 267
AsuHPI GGTGA 3 cut(s) 19, 476, 788
AvaI CYCGRG 1 cut(s) 109
AvaII GGWCC 1 cut(s) 267
BaeI ACNNNNGTAYC 2 cut(s) 636, 669
BanI GGYRCC 2 cut(s) 786, 820
BanII GRGCYC 1 cut(s) 311
BbvI GCAGC 3 cut(s) 76, 604, 832
BccI CCATC 1 cut(s) 811
BciT130I CCWGG 4 cut(s) 186, 602, 612, 693
BclI TGATCA 2 cut(s) 51, 291
BcoDI GTCTC 1 cut(s) 207
BfaI CTAG 1 cut(s) 329
BfoI RGCGCY 1 cut(s) 824
BfuAI ACCTGC 2 cut(s) 189, 307
BisI GCNGC 3 cut(s) 90, 593, 846
BlsI GCNGC 3 cut(s) 91, 594, 847
Bme1390I CCNGG 4 cut(s) 186, 602, 612, 693
Bme18I GGWCC 1 cut(s) 267
BmeT110I CYCGRG 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 267
BmiI GGNNCC 3 cut(s) 269, 788, 822
BmrFI CCNGG 4 cut(s) 186, 602, 612, 693
BmsI GCATC 4 cut(s) 327, 364, 493, 515
BpmI CTGGAG 2 cut(s) 594, 770
BsaHI GRCGYC 1 cut(s) 821
BsaI GGTCTC 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 692
BsaXI ACNNNNNCTCC 2 cut(s) 145, 175
Bsc4I CCNNNNNNNGG 4 cut(s) 305, 679, 694, 796
Bse3DI GCAATG 1 cut(s) 309
BseBI CCWGG 4 cut(s) 186, 602, 612, 693
BseDI CCNNGG 1 cut(s) 692
BseGI GGATG 2 cut(s) 669, 822
BseLI CCNNNNNNNGG 4 cut(s) 305, 679, 694, 796
BseMI GCAATG 1 cut(s) 309
BseMII CTCAG 2 cut(s) 252, 555
BseRI GAGGAG 1 cut(s) 8
BseXI GCAGC 3 cut(s) 76, 604, 832
BshFI GGCC 1 cut(s) 143
BshNI GGYRCC 2 cut(s) 786, 820
BsiHKCI CYCGRG 1 cut(s) 109
BslFI GGGAC 1 cut(s) 768
BslI CCNNNNNNNGG 4 cut(s) 305, 679, 694, 796
BsmAI GTCTC 1 cut(s) 207
BsmFI GGGAC 1 cut(s) 768
BsnI GGCC 1 cut(s) 143
Bso31I GGTCTC 1 cut(s) 207
BsoBI CYCGRG 1 cut(s) 109
Bsp1286I GDGCHC 1 cut(s) 311
Bsp1407I TGTACA 1 cut(s) 879
Bsp143I GATC 2 cut(s) 51, 291
BspANI GGCC 1 cut(s) 143
BspCNI CTCAG 2 cut(s) 253, 556
BspLI GGNNCC 3 cut(s) 269, 788, 822
BspMI ACCTGC 2 cut(s) 189, 307
BspT107I GGYRCC 2 cut(s) 786, 820
BspTNI GGTCTC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 309
BsrGI TGTACA 1 cut(s) 879
BssECI CCNNGG 1 cut(s) 692
BssMI GATC 2 cut(s) 51, 291
BssNI GRCGYC 1 cut(s) 821
Bst2UI CCWGG 4 cut(s) 186, 602, 612, 693
Bst4CI ACNGT 2 cut(s) 40, 837
BstACI GRCGYC 1 cut(s) 821
BstAUI TGTACA 1 cut(s) 879
BstDEI CTNAG 3 cut(s) 261, 564, 629
BstF5I GGATG 2 cut(s) 669, 822
BstH2I RGCGCY 1 cut(s) 824
BstHHI GCGC 1 cut(s) 823
BstKTI GATC 2 cut(s) 54, 294
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 2 cut(s) 51, 291
BstMWI GCNNNNNNNGC 1 cut(s) 829
BstNI CCWGG 4 cut(s) 186, 602, 612, 693
BstSCI CCNGG 4 cut(s) 184, 600, 610, 691
BstV1I GCAGC 3 cut(s) 76, 604, 832
BsuRI GGCC 1 cut(s) 143
BtsCI GGATG 2 cut(s) 669, 822
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 2 cut(s) 69, 842
BveI ACCTGC 2 cut(s) 189, 307
CaiI CAGNNNCTG 1 cut(s) 68
CfoI GCGC 1 cut(s) 823
Cfr13I GGNCC 1 cut(s) 267
Csp6I GTAC 3 cut(s) 325, 787, 880
CviAII CATG 3 cut(s) 218, 242, 734
CviQI GTAC 3 cut(s) 325, 787, 880
DdeI CTNAG 3 cut(s) 261, 564, 629
DinI GGCGCC 1 cut(s) 822
DpnI GATC 2 cut(s) 53, 293
DpnII GATC 2 cut(s) 51, 291
DraIII CACNNNGTG 1 cut(s) 200
Eco24I GRGCYC 1 cut(s) 311
Eco31I GGTCTC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 267
Eco57I CTGAAG 1 cut(s) 90
Eco88I CYCGRG 1 cut(s) 109
EcoRII CCWGG 4 cut(s) 184, 600, 610, 691
EcoT22I ATGCAT 1 cut(s) 508
EcoT38I GRGCYC 1 cut(s) 311
EgeI GGCGCC 1 cut(s) 822
EheI GGCGCC 1 cut(s) 822
FaeI CATG 3 cut(s) 221, 245, 737
FaqI GGGAC 1 cut(s) 768
FatI CATG 3 cut(s) 217, 241, 733
FauNDI CATATG 2 cut(s) 460, 658
FbaI TGATCA 2 cut(s) 51, 291
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 3 cut(s) 90, 593, 846
FokI GGATG 2 cut(s) 656, 829
FriOI GRGCYC 1 cut(s) 311
Fsp4HI GCNGC 3 cut(s) 90, 593, 846
FspBI CTAG 1 cut(s) 329
GlaI GCGC 1 cut(s) 822
GluI GCNGC 3 cut(s) 90, 593, 846
GsuI CTGGAG 2 cut(s) 594, 770
HaeII RGCGCY 1 cut(s) 824
HaeIII GGCC 1 cut(s) 143
HhaI GCGC 1 cut(s) 823
Hin1I GRCGYC 1 cut(s) 821
Hin1II CATG 3 cut(s) 221, 245, 737
Hin6I GCGC 1 cut(s) 821
HinP1I GCGC 1 cut(s) 821
HindIII AAGCTT 2 cut(s) 9, 635
HinfI GANTC 4 cut(s) 4, 107, 455, 898
HphI GGTGA 3 cut(s) 19, 476, 788
Hpy166II GTNNAC 3 cut(s) 205, 267, 454
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 6 cut(s) 176, 279, 357, 548, 749, 867
Hpy8I GTNNAC 3 cut(s) 205, 267, 454
HpyAV CCTTC 6 cut(s) 65, 105, 133, 174, 528, 706
HpyCH4III ACNGT 2 cut(s) 40, 837
HpyCH4V TGCA 6 cut(s) 302, 340, 377, 506, 721, 848
HpyF10VI GCNNNNNNNGC 1 cut(s) 829
HpyF3I CTNAG 3 cut(s) 261, 564, 629
Hsp92I GRCGYC 1 cut(s) 821
Hsp92II CATG 3 cut(s) 221, 245, 737
HspAI GCGC 1 cut(s) 821
KasI GGCGCC 1 cut(s) 820
KpnI GGTACC 1 cut(s) 790
Ksp22I TGATCA 2 cut(s) 51, 291
Kzo9I GATC 2 cut(s) 51, 291
LmnI GCTCC 2 cut(s) 97, 281
Lsp1109I GCAGC 3 cut(s) 76, 604, 832
LweI GCATC 4 cut(s) 327, 364, 493, 515
MaeI CTAG 1 cut(s) 329
MaeIII GTNAC 2 cut(s) 409, 864
MalI GATC 2 cut(s) 53, 293
MboI GATC 2 cut(s) 51, 291
MboII GAAGA 1 cut(s) 164
MhlI GDGCHC 1 cut(s) 311
MluCI AATT 3 cut(s) 225, 443, 478
Mly113I GGCGCC 1 cut(s) 821
MlyI GAGTC 2 cut(s) 101, 449
MmeI TCCRAC 1 cut(s) 668
MnlI CCTC 6 cut(s) 29, 483, 553, 610, 709, 745
Mph1103I ATGCAT 1 cut(s) 508
MroXI GAANNNNTTC 1 cut(s) 538
MseI TTAA 4 cut(s) 224, 416, 446, 705
MslI CAYNNNNRTG 2 cut(s) 392, 815
MspA1I CMGCKG 1 cut(s) 130
MspR9I CCNGG 4 cut(s) 186, 602, 612, 693
MvaI CCWGG 4 cut(s) 186, 602, 612, 693
MwoI GCNNNNNNNGC 1 cut(s) 829
NarI GGCGCC 1 cut(s) 821
NdeI CATATG 2 cut(s) 460, 658
NdeII GATC 2 cut(s) 51, 291
NlaIII CATG 3 cut(s) 221, 245, 737
NlaIV GGNNCC 3 cut(s) 269, 788, 822
NmuCI GTSAC 2 cut(s) 409, 864
NsiI ATGCAT 1 cut(s) 508
PaqCI CACCTGC 1 cut(s) 307
PdmI GAANNNNTTC 1 cut(s) 538
PfeI GAWTC 2 cut(s) 4, 898
PflMI CCANNNNNTGG 1 cut(s) 679
PfoI TCCNGGA 1 cut(s) 600
PkrI GCNGC 3 cut(s) 91, 594, 847
PleI GAGTC 2 cut(s) 101, 449
PluTI GGCGCC 1 cut(s) 824
PpsI GAGTC 2 cut(s) 101, 449
PshBI ATTAAT 1 cut(s) 446
Psp6I CCWGG 4 cut(s) 184, 600, 610, 691
PspGI CCWGG 4 cut(s) 184, 600, 610, 691
PspN4I GGNNCC 3 cut(s) 269, 788, 822
PspPI GGNCC 1 cut(s) 267
PstNI CAGNNNCTG 1 cut(s) 68
PvuII CAGCTG 1 cut(s) 130
RsaI GTAC 3 cut(s) 326, 788, 881
RsaNI GTAC 3 cut(s) 325, 787, 880
RseI CAYNNNNRTG 2 cut(s) 392, 815
SaqAI TTAA 4 cut(s) 224, 416, 446, 705
SatI GCNGC 3 cut(s) 90, 593, 846
Sau3AI GATC 2 cut(s) 51, 291
Sau96I GGNCC 1 cut(s) 267
SchI GAGTC 2 cut(s) 101, 449
ScrFI CCNGG 4 cut(s) 186, 602, 612, 693
SduI GDGCHC 1 cut(s) 311
SfaNI GCATC 4 cut(s) 327, 364, 493, 515
SfoI GGCGCC 1 cut(s) 822
SinI GGWCC 1 cut(s) 267
SmiMI CAYNNNNRTG 2 cut(s) 392, 815
Sse9I AATT 3 cut(s) 225, 443, 478
SspDI GGCGCC 1 cut(s) 820
SspMI CTAG 1 cut(s) 329
StyD4I CCNGG 4 cut(s) 184, 600, 610, 691
TaaI ACNGT 2 cut(s) 40, 837
TaqI TCGA 1 cut(s) 105
TaqII GACCGA 1 cut(s) 852
TasI AATT 3 cut(s) 225, 443, 478
TatI WGTACW 1 cut(s) 879
TfiI GAWTC 2 cut(s) 4, 898
Tru1I TTAA 4 cut(s) 224, 416, 446, 705
Tru9I TTAA 4 cut(s) 224, 416, 446, 705
TscAI CASTG 2 cut(s) 69, 842
TseFI GTSAC 2 cut(s) 409, 864
TseI GCWGC 3 cut(s) 89, 592, 845
Tsp45I GTSAC 2 cut(s) 409, 864
TspDTI ATGAA 2 cut(s) 17, 376
TspRI CASTG 2 cut(s) 69, 842
Van91I CCANNNNNTGG 1 cut(s) 679
VpaK11BI GGWCC 1 cut(s) 267
VspI ATTAAT 1 cut(s) 446
XmiI GTMKAC 1 cut(s) 204
XmnI GAANNNNTTC 1 cut(s) 538
XspI CTAG 1 cut(s) 329
Zsp2I ATGCAT 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.