Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009955.1

Orthogroup ID

OG0007238

Physical Location & Seq

Genomic Coordinates Forward (+)

1358 .. 2686

Gene Structure 1329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009955.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atggaacggctgccagaggcatccaaagtaacaacatttcagggattaaagtcgattcatgcagattctctgtcagttgaccttgaagaatcatctgcaatggaggtggacgatgagaatggaaaatctaaaagtcaattgaatggtgccaggacaggtaatgcatataatgttggagaaaaagagcagtggtgtctgtcgacattaggctacctcaaagcgttctcaaggcaatatgcgtctgagatatggcctcatatggagaggttggatgctgaggtcataacggagaatgttcatccccttatacgaaaagcaatctactgtggtctacgtcgatcaactgatgggttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000184 GO:0000339 GO:0000375 GO:0000377 GO:0000394 GO:0000398 GO:0000956 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0005846 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009892 GO:0009987 GO:0010033 GO:0010228 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0019222 GO:0019439 GO:0022414 GO:0031047 GO:0031050 GO:0031053 GO:0031503 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033993 GO:0034470 GO:0034518 GO:0034613 GO:0034641 GO:0034655 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0045184 GO:0046483 GO:0046700 GO:0046907 GO:0048519 GO:0048571 GO:0048573 GO:0048574 GO:0048608 GO:0048731 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0070887 GO:0070918 GO:0071166 GO:0071310 GO:0071359 GO:0071407 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0097159 GO:0097305 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901698 GO:1901699 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

MIF4G MIF4G_like MIF4G_like_2

Protein Analysis

118

Amino Acids

13.22

Weight (kDa)

5.36

Isoelectric Point (pI)

33.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13540
fragaria_vesca	FvH4_3g28270 FvH4_3g28270 FvH4_3g28270 FvH4_3g28270 FvH4_3g28270
malus_domestica	MD03G1169700.v1.1 MD11G1186900.v1.1
prunus_persica	Prupe.4G257300_v2.0.a1 Prupe.4G257300_v2.0.a1 Prupe.4G257300_v2.0.a1
pyrus_communis	pycom03g12610 pycom11g16380
rosa_chinensis	RchiOBHm_Chr5g0051141
rosa_laevigata	RLG00000034757
rosa_multiflora	Rmu_sc0000446.1_g000015 Rmu_sc0009955.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029400
rosa_rugosa	Rorug05G0266000
rosa_samantha	Rh5AG338100 Rh5BG348200 Rh5CG375300 Rh5DG361100
rosa_wichuraiana	Rw0G023640 Rw5G031950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	146
AccI	GTMKAC	2 cut(s)	200, 331
AgsI	TTSAA	2 cut(s)	86, 142
AjnI	CCWGG	1 cut(s)	149
AoxI	GGCC	1 cut(s)	251
ApeKI	GCWGC	1 cut(s)	10
BanI	GGYRCC	1 cut(s)	146
BbvCI	CCTCAGC	1 cut(s)	276
BccI	CCATC	1 cut(s)	341
BceAI	ACGGC	1 cut(s)	23
BciT130I	CCWGG	1 cut(s)	151
BisI	GCNGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	12
Bme1390I	CCNGG	1 cut(s)	151
BmiI	GGNNCC	1 cut(s)	148
BmrFI	CCNGG	1 cut(s)	151
BmsI	GCATC	2 cut(s)	29, 262
Bpu10I	CCTNAGC	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	211
Bse3DI	GCAATG	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	151
BseGI	GGATG	3 cut(s)	20, 277, 298
BseMI	GCAATG	1 cut(s)	105
BseMII	CTCAG	2 cut(s)	234, 267
BshFI	GGCC	1 cut(s)	253
BshNI	GGYRCC	1 cut(s)	146
BsnI	GGCC	1 cut(s)	253
Bsp143I	GATC	1 cut(s)	338
BspANI	GGCC	1 cut(s)	253
BspCNI	CTCAG	2 cut(s)	235, 268
BspLI	GGNNCC	1 cut(s)	148
BspT107I	GGYRCC	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	105
BssMI	GATC	1 cut(s)	338
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	1 cut(s)	326
BstDEI	CTNAG	2 cut(s)	243, 276
BstF5I	GGATG	3 cut(s)	20, 277, 298
BstKTI	GATC	1 cut(s)	341
BstMBI	GATC	1 cut(s)	338
BstNI	CCWGG	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	149
BsuRI	GGCC	1 cut(s)	253
BtsCI	GGATG	3 cut(s)	20, 277, 298
BtsI	GCAGTG	1 cut(s)	194
BtsIMutI	CAGTG	1 cut(s)	194
CseI	GACGC	1 cut(s)	228
CspCI	CAANNNNNGTGG	2 cut(s)	87, 122
CviAII	CATG	1 cut(s)	59
CviJI	RGCY	3 cut(s)	10, 210, 253
CviKI_1	RGCY	3 cut(s)	10, 210, 253
DdeI	CTNAG	2 cut(s)	243, 276
DpnI	GATC	1 cut(s)	340
DpnII	GATC	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	149
EcoT22I	ATGCAT	1 cut(s)	166
FaeI	CATG	1 cut(s)	62
FaiI	YATR	9 cut(s)	60, 166, 168, 237, 250, 258, 260, 284, 308
FatI	CATG	1 cut(s)	58
FauNDI	CATATG	1 cut(s)	258
FblI	GTMKAC	2 cut(s)	200, 331
Fnu4HI	GCNGC	1 cut(s)	11
FokI	GGATG	3 cut(s)	7, 284, 285
Fsp4HI	GCNGC	1 cut(s)	11
GluI	GCNGC	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	253
HgaI	GACGC	1 cut(s)	228
Hin1II	CATG	1 cut(s)	62
HincII	GTYRAC	2 cut(s)	79, 201
HindII	GTYRAC	2 cut(s)	79, 201
HinfI	GANTC	3 cut(s)	55, 65, 89
Hpy166II	GTNNAC	4 cut(s)	79, 109, 201, 332
Hpy188I	TCNGA	1 cut(s)	244
Hpy8I	GTNNAC	4 cut(s)	79, 109, 201, 332
Hpy99I	CGWCG	1 cut(s)	339
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4IV	ACGT	1 cut(s)	334
HpyCH4V	TGCA	3 cut(s)	62, 98, 164
HpyF3I	CTNAG	2 cut(s)	243, 276
HpySE526I	ACGT	1 cut(s)	334
Hsp92II	CATG	1 cut(s)	62
Kzo9I	GATC	1 cut(s)	338
LpnPI	CCDG	5 cut(s)	26, 27, 136, 141, 163
LweI	GCATC	2 cut(s)	29, 262
MaeII	ACGT	1 cut(s)	334
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	1 cut(s)	340
MboI	GATC	1 cut(s)	338
MboII	GAAGA	1 cut(s)	98
MfeI	CAATTG	1 cut(s)	137
MluCI	AATT	1 cut(s)	137
MmeI	TCCRAC	2 cut(s)	154, 249
MnlI	CCTC	6 cut(s)	10, 97, 224, 258, 264, 271
Mph1103I	ATGCAT	1 cut(s)	166
MseI	TTAA	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	151
MunI	CAATTG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	151
NdeI	CATATG	1 cut(s)	258
NdeII	GATC	1 cut(s)	338
NlaIII	CATG	1 cut(s)	62
NlaIV	GGNNCC	1 cut(s)	148
NsiI	ATGCAT	1 cut(s)	166
PfeI	GAWTC	3 cut(s)	55, 65, 89
PkrI	GCNGC	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	148
SalI	GTCGAC	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	47
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	1 cut(s)	338
ScrFI	CCNGG	1 cut(s)	151
SetI	ASST	7 cut(s)	84, 108, 160, 216, 269, 282, 337
SfaNI	GCATC	2 cut(s)	29, 262
SgeI	CNNG	8 cut(s)	26, 53, 71, 95, 162, 163, 168, 240
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
Sse9I	AATT	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	149
TaaI	ACNGT	1 cut(s)	326
TaiI	ACGT	1 cut(s)	337
TaqI	TCGA	3 cut(s)	53, 200, 337
TasI	AATT	1 cut(s)	137
TfiI	GAWTC	3 cut(s)	55, 65, 89
Tru1I	TTAA	1 cut(s)	47
Tru9I	TTAA	1 cut(s)	47
TscAI	CASTG	1 cut(s)	194
TseI	GCWGC	1 cut(s)	10
TspDTI	ATGAA	2 cut(s)	47, 287
TspGWI	ACGGA	1 cut(s)	302
TspRI	CASTG	1 cut(s)	194
XmiI	GTMKAC	2 cut(s)	200, 331
Zsp2I	ATGCAT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.