Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013317.1

Orthogroup ID

OG0002060

Physical Location & Seq

Genomic Coordinates Reverse (-)

80 .. 2146

Gene Structure 2067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013317.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

atgaaacaactgaaagtgatgaggttgttaattctgttgggtcttgtaatcatccaagaggcaacttcacatggagagcaccctctctccagaattgctattcatgaagcaacctttgctcttcatgaccttgcttatatcaaagcctctcccactgttctaggattaagggggcaagacactgaatgggtgactttggaatttggttctgaaaacccttcaactgaggattggattggagtattttctcctgctaattttagtgcttcttcctgccctgaggaaaatccaagagtttatcctccatttttgtgctctgcacctattaagtttcaatatgcaaattactccagtcccgagtacaaggacactggaaaaggcttcttgaagcttcagctgatcaaccagagatcagacttctctttcgcgctgttctctggtggtttactgaatccaaaggtcgtggctgtgtcaaatgttgtagctttctctaatccaaatgcaccagtttatccacgagtagcacaagggaaagaatggaatgaaatgactgtaacatggactagtggatatgggattgatgaggcagagccttttgttgattggggtccaagaggagaacgtttgcgttccccggctgtgacacaaacttttgatcgttatagcatgtgtggtgcacctgcaagaacagtgggatggcgtgaccctggattcatacacactagttttctgaaggagttgtggccaaataaagtgtatacgtacaggctgggacatagattgtctaatgatacatatatatggagtcaagactatcagtttaaagcatctccttatcctggtcaaaattctttacaacgtgtagtcattttcggtgacatgggaaaggatgaagctgatggttccaatgaatataacaatttccagagaggctctctcaacactactaagcagcttatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

320

Amino Acids

35.98

Weight (kDa)

6.32

Isoelectric Point (pI)

30.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002060)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13750
fragaria_vesca	FvH4_4g30010 FvH4_4g30010 FvH4_4g30010 FvH4_4g30010 FvH4_4g30010 FvH4_4g30010 FvH4_4g30010 FvH4_4g30010 FvH4_4g30010 FvH4_4g30010 FvH4_4g30010
malus_domestica	MD16G1061000.v1.1 MD16G1061100.v1.1
prunus_persica	Prupe.1G287100_v2.0.a1 Prupe.1G287100_v2.0.a1 Prupe.1G287200_v2.0.a1 Prupe.1G287200_v2.0.a1
pyrus_communis	pycom16g05330 pycom16g05340 pycom16g05350
rosa_chinensis	RchiOBHm_Chr4g0438291 RchiOBHm_Chr4g0438301
rosa_laevigata	RLG00000006372 RLG00000006373
rosa_multiflora	Rmu_co8060680.1_g000001 Rmu_sc0011129.1_g000003 Rmu_sc0013317.1_g000001 Rmu_sc0020676.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379380 Rroxscaffold_5G00379390
rosa_rugosa	Rorug04G0308800
rosa_samantha	Rh4AG359800 Rh4AG359900 Rh4BG370800 Rh4BG370900 Rh4CG384900 Rh4CG385000 Rh4DG365600 Rh4DG365800
rosa_wichuraiana	Rw0G006440 Rw0G006450 Rw0G016380 Rw0G016390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	688
Acc36I	ACCTGC	1 cut(s)	688
AccI	GTMKAC	1 cut(s)	758
AccII	CGCG	1 cut(s)	428
AclI	AACGTT	1 cut(s)	622
AcoI	YGGCCR	1 cut(s)	743
AcsI	RAATTY	2 cut(s)	200, 847
AcuI	CTGAAG	2 cut(s)	377, 752
AfaI	GTAC	2 cut(s)	362, 764
AfiI	CCNNNNNNNGG	1 cut(s)	839
AflIII	ACRYGT	1 cut(s)	859
AgsI	TTSAA	3 cut(s)	222, 335, 388
AhlI	ACTAGT	2 cut(s)	563, 722
AjnI	CCWGG	2 cut(s)	706, 838
AluBI	AGCT	5 cut(s)	391, 397, 485, 896, 955
AluI	AGCT	5 cut(s)	391, 397, 485, 896, 955
Alw21I	GWGCWC	3 cut(s)	81, 317, 679
Alw44I	GTGCAC	1 cut(s)	675
Ama87I	CYCGRG	1 cut(s)	356
AoxI	GGCC	1 cut(s)	743
ApaLI	GTGCAC	1 cut(s)	675
ApeKI	GCWGC	1 cut(s)	952
ApoI	RAATTY	2 cut(s)	200, 847
ArsI	GACNNNNNNTTYG	2 cut(s)	407, 439
AspLEI	GCGC	1 cut(s)	430
AspS9I	GGNCC	1 cut(s)	608
AsuC2I	CCSGG	1 cut(s)	635
AsuHPI	GGTGA	2 cut(s)	202, 887
AvaI	CYCGRG	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	608
AxyI	CCTNAGG	1 cut(s)	279
BaeGI	GKGCMC	1 cut(s)	679
BalI	TGGCCA	1 cut(s)	745
BauI	CACGAG	1 cut(s)	516
Bbv12I	GWGCWC	3 cut(s)	81, 317, 679
BccI	CCATC	2 cut(s)	690, 893
BciT130I	CCWGG	2 cut(s)	708, 840
BclI	TGATCA	1 cut(s)	399
BcnI	CCSGG	1 cut(s)	635
BcuI	ACTAGT	2 cut(s)	563, 722
BfaI	CTAG	3 cut(s)	161, 564, 723
BfuAI	ACCTGC	1 cut(s)	688
BisI	GCNGC	1 cut(s)	953
BlsI	GCNGC	1 cut(s)	954
Bme1390I	CCNGG	3 cut(s)	635, 708, 840
Bme18I	GGWCC	1 cut(s)	608
BmeT110I	CYCGRG	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	608
BmiI	GGNNCC	2 cut(s)	609, 904
BmrFI	CCNGG	3 cut(s)	635, 708, 840
BmsI	GCATC	1 cut(s)	836
BplI	GAGNNNNNCTC	4 cut(s)	919, 951, 921, 953
BpmI	CTGGAG	2 cut(s)	73, 334
BpuMI	CCSGG	1 cut(s)	635
BsaAI	YACGTR	1 cut(s)	762
BsaJI	CCNNGG	2 cut(s)	633, 706
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	1 cut(s)	839
Bse1I	ACTGG	3 cut(s)	351, 376, 506
Bse21I	CCTNAGG	1 cut(s)	279
BseBI	CCWGG	2 cut(s)	708, 840
BseDI	CCNNGG	2 cut(s)	633, 706
BseGI	GGATG	3 cut(s)	51, 701, 895
BseLI	CCNNNNNNNGG	1 cut(s)	839
BseMII	CTCAG	2 cut(s)	216, 270
BseNI	ACTGG	3 cut(s)	351, 376, 506
BseRI	GAGGAG	1 cut(s)	630
BseSI	GKGCMC	1 cut(s)	679
BseYI	CCCAGC	1 cut(s)	769
BsgI	GTGCAG	1 cut(s)	303
Bsh1236I	CGCG	1 cut(s)	428
BshFI	GGCC	1 cut(s)	745
BsiHKAI	GWGCWC	3 cut(s)	81, 317, 679
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	1 cut(s)	635
BslFI	GGGAC	2 cut(s)	339, 786
BslI	CCNNNNNNNGG	1 cut(s)	839
BsmFI	GGGAC	2 cut(s)	339, 786
BsnI	GGCC	1 cut(s)	745
BsoBI	CYCGRG	1 cut(s)	356
Bsp1286I	GDGCHC	3 cut(s)	81, 317, 679
Bsp143I	GATC	3 cut(s)	399, 410, 655
BspANI	GGCC	1 cut(s)	745
BspCNI	CTCAG	2 cut(s)	217, 271
BspFNI	CGCG	1 cut(s)	428
BspHI	TCATGA	2 cut(s)	103, 124
BspLI	GGNNCC	2 cut(s)	609, 904
BspMI	ACCTGC	1 cut(s)	688
BspQI	GCTCTTC	1 cut(s)	126
BsrI	ACTGG	3 cut(s)	351, 376, 506
BssECI	CCNNGG	2 cut(s)	633, 706
BssMI	GATC	3 cut(s)	399, 410, 655
BssNAI	GTATAC	1 cut(s)	759
BssSI	CACGAG	1 cut(s)	516
Bst1107I	GTATAC	1 cut(s)	759
Bst2BI	CACGAG	1 cut(s)	516
Bst2UI	CCWGG	2 cut(s)	708, 840
Bst4CI	ACNGT	3 cut(s)	157, 553, 691
Bst6I	CTCTTC	1 cut(s)	126
BstAPI	GCANNNNNTGC	1 cut(s)	116
BstBAI	YACGTR	1 cut(s)	762
BstDEI	CTNAG	3 cut(s)	225, 279, 948
BstF5I	GGATG	3 cut(s)	51, 701, 895
BstFNI	CGCG	1 cut(s)	428
BstHHI	GCGC	1 cut(s)	430
BstKTI	GATC	3 cut(s)	402, 413, 658
BstMBI	GATC	3 cut(s)	399, 410, 655
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNI	CCWGG	2 cut(s)	708, 840
BstNSI	RCATGY	1 cut(s)	670
BstSCI	CCNGG	3 cut(s)	633, 706, 838
BstSLI	GKGCMC	1 cut(s)	679
BstSNI	TACGTA	1 cut(s)	762
BstUI	CGCG	1 cut(s)	428
BstZ17I	GTATAC	1 cut(s)	759
Bsu36I	CCTNAGG	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	745
BtsCI	GGATG	3 cut(s)	51, 701, 895
BtsIMutI	CAGTG	4 cut(s)	153, 180, 369, 696
BveI	ACCTGC	1 cut(s)	688
CciI	TCATGA	2 cut(s)	103, 124
CfoI	GCGC	1 cut(s)	430
Cfr13I	GGNCC	1 cut(s)	608
Csp6I	GTAC	2 cut(s)	361, 763
CspCI	CAANNNNNGTGG	4 cut(s)	444, 479, 672, 707
CviAII	CATG	6 cut(s)	71, 104, 125, 558, 667, 880
CviQI	GTAC	2 cut(s)	361, 763
DdeI	CTNAG	3 cut(s)	225, 279, 948
DpnI	GATC	3 cut(s)	401, 412, 657
DpnII	GATC	3 cut(s)	399, 410, 655
DraI	TTTAAA	1 cut(s)	823
EaeI	YGGCCR	1 cut(s)	743
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
Eco105I	TACGTA	1 cut(s)	762
Eco47I	GGWCC	1 cut(s)	608
Eco57I	CTGAAG	2 cut(s)	377, 752
Eco81I	CCTNAGG	1 cut(s)	279
Eco88I	CYCGRG	1 cut(s)	356
EcoRII	CCWGG	2 cut(s)	706, 838
FaeI	CATG	6 cut(s)	74, 107, 128, 561, 670, 883
FaqI	GGGAC	2 cut(s)	339, 786
FatI	CATG	6 cut(s)	70, 103, 124, 557, 666, 879
FbaI	TGATCA	1 cut(s)	399
FblI	GTMKAC	1 cut(s)	758
Fnu4HI	GCNGC	1 cut(s)	953
FokI	GGATG	3 cut(s)	38, 708, 902
Fsp4HI	GCNGC	1 cut(s)	953
FspBI	CTAG	3 cut(s)	161, 564, 723
GlaI	GCGC	1 cut(s)	429
GluI	GCNGC	1 cut(s)	953
GsaI	CCCAGC	1 cut(s)	773
GsuI	CTGGAG	2 cut(s)	73, 334
HaeIII	GGCC	1 cut(s)	745
HapII	CCGG	1 cut(s)	635
HhaI	GCGC	1 cut(s)	430
Hin1II	CATG	6 cut(s)	74, 107, 128, 561, 670, 883
Hin6I	GCGC	1 cut(s)	428
HinP1I	GCGC	1 cut(s)	428
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	3 cut(s)	451, 711, 805
HpaII	CCGG	1 cut(s)	635
HphI	GGTGA	2 cut(s)	202, 887
Hpy166II	GTNNAC	3 cut(s)	446, 677, 759
Hpy188I	TCNGA	3 cut(s)	211, 415, 732
Hpy188III	TCNNGA	7 cut(s)	90, 104, 125, 356, 385, 809, 925
Hpy8I	GTNNAC	3 cut(s)	446, 677, 759
HpyAV	CCTTC	2 cut(s)	228, 727
HpyCH4III	ACNGT	3 cut(s)	157, 553, 691
HpyCH4IV	ACGT	3 cut(s)	622, 761, 859
HpyCH4V	TGCA	5 cut(s)	320, 341, 503, 677, 683
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	3 cut(s)	225, 279, 948
HpySE526I	ACGT	3 cut(s)	622, 761, 859
Hsp92II	CATG	6 cut(s)	74, 107, 128, 561, 670, 883
HspAI	GCGC	1 cut(s)	428
Ksp22I	TGATCA	1 cut(s)	399
Kzo9I	GATC	3 cut(s)	399, 410, 655
LguI	GCTCTTC	1 cut(s)	126
LweI	GCATC	1 cut(s)	836
MaeI	CTAG	3 cut(s)	161, 564, 723
MaeII	ACGT	3 cut(s)	622, 761, 859
MaeIII	GTNAC	5 cut(s)	190, 553, 640, 701, 875
MalI	GATC	3 cut(s)	401, 412, 657
MboI	GATC	3 cut(s)	399, 410, 655
MboII	GAAGA	2 cut(s)	113, 261
MhlI	GDGCHC	3 cut(s)	81, 317, 679
MlsI	TGGCCA	1 cut(s)	745
MluCI	AATT	7 cut(s)	30, 93, 200, 256, 343, 847, 919
MluNI	TGGCCA	1 cut(s)	745
MlyI	GAGTC	1 cut(s)	814
Mox20I	TGGCCA	1 cut(s)	745
MscI	TGGCCA	1 cut(s)	745
MseI	TTAA	4 cut(s)	29, 167, 327, 822
MslI	CAYNNNNRTG	2 cut(s)	310, 799
Msp20I	TGGCCA	1 cut(s)	745
MspA1I	CMGCKG	1 cut(s)	397
MspI	CCGG	1 cut(s)	635
MspR9I	CCNGG	3 cut(s)	635, 708, 840
MvaI	CCWGG	2 cut(s)	708, 840
MvnI	CGCG	1 cut(s)	428
MwoI	GCNNNNNNNGC	1 cut(s)	116
NciI	CCSGG	1 cut(s)	635
NdeII	GATC	3 cut(s)	399, 410, 655
NlaIII	CATG	6 cut(s)	74, 107, 128, 561, 670, 883
NlaIV	GGNNCC	2 cut(s)	609, 904
NmuCI	GTSAC	4 cut(s)	190, 640, 701, 875
NspI	RCATGY	1 cut(s)	670
PagI	TCATGA	2 cut(s)	103, 124
PaqCI	CACCTGC	1 cut(s)	688
PciSI	GCTCTTC	1 cut(s)	126
PfeI	GAWTC	2 cut(s)	451, 711
PkrI	GCNGC	1 cut(s)	954
PleI	GAGTC	1 cut(s)	813
PpsI	GAGTC	1 cut(s)	813
Ppu21I	YACGTR	1 cut(s)	762
Psp1406I	AACGTT	1 cut(s)	622
Psp6I	CCWGG	2 cut(s)	706, 838
PspFI	CCCAGC	1 cut(s)	769
PspGI	CCWGG	2 cut(s)	706, 838
PspN4I	GGNNCC	2 cut(s)	609, 904
PspPI	GGNCC	1 cut(s)	608
PvuII	CAGCTG	1 cut(s)	397
RsaI	GTAC	2 cut(s)	362, 764
RsaNI	GTAC	2 cut(s)	361, 763
RseI	CAYNNNNRTG	2 cut(s)	310, 799
SapI	GCTCTTC	1 cut(s)	126
SaqAI	TTAA	4 cut(s)	29, 167, 327, 822
SatI	GCNGC	1 cut(s)	953
Sau3AI	GATC	3 cut(s)	399, 410, 655
Sau96I	GGNCC	1 cut(s)	608
SchI	GAGTC	1 cut(s)	814
ScrFI	CCNGG	3 cut(s)	635, 708, 840
SduI	GDGCHC	3 cut(s)	81, 317, 679
SfaNI	GCATC	1 cut(s)	836
SinI	GGWCC	1 cut(s)	608
SmiMI	CAYNNNNRTG	2 cut(s)	310, 799
SnaBI	TACGTA	1 cut(s)	762
SpeI	ACTAGT	2 cut(s)	563, 722
Sse9I	AATT	7 cut(s)	30, 93, 200, 256, 343, 847, 919
SspMI	CTAG	3 cut(s)	161, 564, 723
StyD4I	CCNGG	3 cut(s)	633, 706, 838
TaaI	ACNGT	3 cut(s)	157, 553, 691
TaiI	ACGT	3 cut(s)	625, 764, 862
TasI	AATT	7 cut(s)	30, 93, 200, 256, 343, 847, 919
TatI	WGTACW	1 cut(s)	360
TfiI	GAWTC	2 cut(s)	451, 711
Tru1I	TTAA	4 cut(s)	29, 167, 327, 822
Tru9I	TTAA	4 cut(s)	29, 167, 327, 822
TscAI	CASTG	4 cut(s)	160, 187, 376, 696
TseFI	GTSAC	4 cut(s)	190, 640, 701, 875
TseI	GCWGC	1 cut(s)	952
Tsp45I	GTSAC	4 cut(s)	190, 640, 701, 875
TspDTI	ATGAA	8 cut(s)	17, 92, 113, 120, 558, 703, 906, 924
TspRI	CASTG	4 cut(s)	160, 187, 376, 696
VneI	GTGCAC	1 cut(s)	675
VpaK11BI	GGWCC	1 cut(s)	608
XapI	RAATTY	2 cut(s)	200, 847
XceI	RCATGY	1 cut(s)	670
XmiI	GTMKAC	1 cut(s)	758
XspI	CTAG	3 cut(s)	161, 564, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.