Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002060

Physical Location & Seq

Genomic Coordinates Reverse (-)

58652010 .. 58656593

Gene Structure 4584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG365800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGTTACTTCCCCACAGGTTGAGAAAGATGAAAGTTGTTGTTACCTTGTTTGCAATCACATTGGTGCTTGCAACAGTTGAGGAGGTGAGGTCTGATGGAGATCAGCCCTTGTCCAAAATTGCGGTTCACCGGGCGTTATCTGCTCTTCATGACAGAGCTTATGTTAAAGCCTCCCCTGAGCTTCTTGGACTGAAGGGGGAAACTTCAGTTTGGGTAAATCTGCAGTTCAGTTCTCCTCACCCTTCATATGATGATTGGATTGGAGTATTTTCTCCTGCAAATTTCAGTGCTTCAACCTGCGCTGCAGAAAATTCTTTGATGACTGCTCCATTTTTATGTTCTGCACCAATTAAGTACCAGTATGCAAATTACTCTAGTCCGAAGTACCAAGATACAGGGACAGGCTCCTTGAAGTTACAGTTGATTAACCAGAGATCAGACTTCTCTTTTGCACTATTCTCCGGTGGATTGTCAAACCCAAAGCTGGTGGCAATCTCTGGTAGAGTAACATTCGCCAATCCAAAAGCTCCAGTTTATCCACGCTTAGCACAAGGGAAAATGTGGAATGAGATGACTGTAACATGGACAAGTGGATATGCTCTAGGGGAAGCAACACCTTTTGTTGAATGGGGTGAGAAAGGAGGAGACCTTGTGAGATCCCCAGCTGGGACTTTGACCTTCGATCGCAACAGCATGTGTGGTGCACCAGCAAGAACAGTAGGATGGCGAGATCCTGGATATATACACACTGCTTTTCTGAAGGAATTGTGGCCCAATACAGTGTATATCTACAAACTAGGACACAAATTGTCAGATGGTTCATATGTTTTCAGTCGACAATACCAGTTCAGAGCCTCTCCTTATCCTGGACAAAATTCTCCTCAAAGTATTGTTATATTTGGTGACATGGGAAAGGATGAAGAGGATGGTTCCAATGAATACAACAATTTCCAGAGAGGCTCTCTCAACACTACTAAGCAGCTTATTCGAGACCTGAAAAACATTGATATTGTGTTCCATATTGGAGATATATGTTACGCAAATGGTTACCTTTCACAATGGGACCAATTTACTGCACAGGTTGAGCCAATAGCATCTTCTGTTCCTTACATGGTTGCAAGGTTTGTCAATTCTACAACAGTTTCACACCTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

385

Amino Acids

42.69

Weight (kDa)

8.5

Isoelectric Point (pI)

37.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
fn3_PAP	PF17808	55 - 173	4.2e-44	Fn3-like domain from Purple Acid Phosphatase
Pur_ac_phosph_N	PF16656	180 - 284	4.9e-14	Purple acid Phosphatase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002060)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13750
fragaria_vesca	FvH4_4g30010 FvH4_4g30010 FvH4_4g30010 FvH4_4g30010 FvH4_4g30010 FvH4_4g30010 FvH4_4g30010 FvH4_4g30010 FvH4_4g30010 FvH4_4g30010 FvH4_4g30010
malus_domestica	MD16G1061000.v1.1 MD16G1061100.v1.1
prunus_persica	Prupe.1G287100_v2.0.a1 Prupe.1G287100_v2.0.a1 Prupe.1G287200_v2.0.a1 Prupe.1G287200_v2.0.a1
pyrus_communis	pycom16g05330 pycom16g05340 pycom16g05350
rosa_chinensis	RchiOBHm_Chr4g0438291 RchiOBHm_Chr4g0438301
rosa_laevigata	RLG00000006372 RLG00000006373
rosa_multiflora	Rmu_co8060680.1_g000001 Rmu_sc0011129.1_g000003 Rmu_sc0013317.1_g000001 Rmu_sc0020676.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379380 Rroxscaffold_5G00379390
rosa_rugosa	Rorug04G0308800
rosa_samantha	Rh4AG359800 Rh4AG359900 Rh4BG370800 Rh4BG370900 Rh4CG384900 Rh4CG385000 Rh4DG365600 Rh4DG365800
rosa_wichuraiana	Rw0G006440 Rw0G006450 Rw0G016380 Rw0G016390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	305
AccI	GTMKAC	1 cut(s)	835
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	2 cut(s)	651, 725
AcsI	RAATTY	3 cut(s)	280, 310, 874
AcuI	CTGAAG	3 cut(s)	189, 212, 779
AfaI	GTAC	2 cut(s)	356, 386
AfiI	CCNNNNNNNGG	3 cut(s)	484, 666, 866
AgsI	TTSAA	3 cut(s)	294, 412, 626
AjnI	CCWGG	2 cut(s)	733, 865
AjuI	GAANNNNNNNTTGG	2 cut(s)	1081, 1113
AleI	CACNNNNGTG	1 cut(s)	62
AluBI	AGCT	6 cut(s)	158, 181, 484, 527, 665, 982
AluI	AGCT	6 cut(s)	158, 181, 484, 527, 665, 982
Alw21I	GWGCWC	1 cut(s)	706
Alw26I	GTCTC	2 cut(s)	639, 984
Alw44I	GTGCAC	1 cut(s)	702
AlwI	GGATC	2 cut(s)	651, 725
AoxI	GGCC	1 cut(s)	770
ApaLI	GTGCAC	1 cut(s)	702
ApeKI	GCWGC	2 cut(s)	302, 979
ApoI	RAATTY	3 cut(s)	280, 310, 874
ArsI	GACNNNNNNTTYG	2 cut(s)	431, 463
AspLEI	GCGC	1 cut(s)	302
AspS9I	GGNCC	2 cut(s)	771, 1063
AsuC2I	CCSGG	1 cut(s)	131
AsuHPI	GGTGA	5 cut(s)	97, 119, 230, 644, 914
AvaII	GGWCC	1 cut(s)	1063
BaeGI	GKGCMC	1 cut(s)	706
Bbv12I	GWGCWC	1 cut(s)	706
BbvI	GCAGC	2 cut(s)	289, 991
BccI	CCATC	4 cut(s)	89, 717, 809, 920
BcgI	CGANNNNNNTGC	2 cut(s)	968, 1002
BciT130I	CCWGG	2 cut(s)	735, 867
BcnI	CCSGG	1 cut(s)	131
BcoDI	GTCTC	2 cut(s)	639, 984
BfaI	CTAG	3 cut(s)	375, 602, 797
BfmI	CTRYAG	2 cut(s)	221, 303
BfuAI	ACCTGC	1 cut(s)	305
BisI	GCNGC	2 cut(s)	303, 980
BlpI	GCTNAGC	1 cut(s)	544
BlsI	GCNGC	2 cut(s)	304, 981
Bme1390I	CCNGG	3 cut(s)	131, 735, 867
Bme18I	GGWCC	1 cut(s)	1063
BmgT120I	GGNCC	2 cut(s)	771, 1063
BmiI	GGNNCC	3 cut(s)	406, 931, 1064
BmrFI	CCNGG	3 cut(s)	131, 735, 867
BmsI	GCATC	1 cut(s)	1103
BplI	GAGNNNNNCTC	4 cut(s)	946, 978, 948, 980
BpmI	CTGGAG	1 cut(s)	513
Bpu10I	CCTNAGC	1 cut(s)	177
Bpu1102I	GCTNAGC	1 cut(s)	544
BpuMI	CCSGG	1 cut(s)	131
BsaBI	GATNNNNATC	1 cut(s)	99
BsaI	GGTCTC	2 cut(s)	639, 984
BsaWI	WCCGGW	1 cut(s)	461
BsaXI	ACNNNNNCTCC	4 cut(s)	74, 104, 636, 666
Bsc4I	CCNNNNNNNGG	3 cut(s)	484, 666, 866
Bse1I	ACTGG	3 cut(s)	358, 530, 844
Bse8I	GATNNNNATC	1 cut(s)	99
BseBI	CCWGG	2 cut(s)	735, 867
BseGI	GGATG	3 cut(s)	728, 922, 931
BseJI	GATNNNNATC	1 cut(s)	99
BseLI	CCNNNNNNNGG	3 cut(s)	484, 666, 866
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	3 cut(s)	358, 530, 844
BseRI	GAGGAG	4 cut(s)	95, 225, 657, 870
BseSI	GKGCMC	1 cut(s)	706
BseXI	GCAGC	2 cut(s)	289, 991
BseYI	CCCAGC	2 cut(s)	661, 665
BsgI	GTGCAG	2 cut(s)	327, 1059
Bsh1285I	CGRYCG	1 cut(s)	685
BshFI	GGCC	1 cut(s)	772
BsiEI	CGRYCG	1 cut(s)	685
BsiHKAI	GWGCWC	1 cut(s)	706
BsiSI	CCGG	2 cut(s)	130, 462
BslFI	GGGAC	3 cut(s)	412, 682, 1076
BslI	CCNNNNNNNGG	3 cut(s)	484, 666, 866
BsmAI	GTCTC	2 cut(s)	639, 984
BsmFI	GGGAC	3 cut(s)	412, 682, 1076
BsnI	GGCC	1 cut(s)	772
Bso31I	GGTCTC	2 cut(s)	639, 984
Bsp1286I	GDGCHC	1 cut(s)	706
Bsp143I	GATC	5 cut(s)	100, 434, 656, 682, 730
Bsp1720I	GCTNAGC	1 cut(s)	544
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	1 cut(s)	772
BspCNI	CTCAG	1 cut(s)	169
BspHI	TCATGA	1 cut(s)	148
BspLI	GGNNCC	3 cut(s)	406, 931, 1064
BspMAI	CTGCAG	2 cut(s)	225, 307
BspMI	ACCTGC	1 cut(s)	305
BspPI	GGATC	2 cut(s)	651, 725
BspQI	GCTCTTC	1 cut(s)	150
BspTNI	GGTCTC	2 cut(s)	639, 984
BsrI	ACTGG	3 cut(s)	358, 530, 844
BssMI	GATC	5 cut(s)	100, 434, 656, 682, 730
Bst2UI	CCWGG	2 cut(s)	735, 867
Bst4CI	ACNGT	6 cut(s)	76, 420, 577, 718, 781, 1141
Bst6I	CTCTTC	2 cut(s)	150, 915
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	3 cut(s)	177, 544, 975
BstEII	GGTNACC	1 cut(s)	1046
BstF5I	GGATG	3 cut(s)	728, 922, 931
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	5 cut(s)	103, 437, 659, 685, 733
BstMAI	GTCTC	2 cut(s)	639, 984
BstMBI	GATC	5 cut(s)	100, 434, 656, 682, 730
BstMCI	CGRYCG	1 cut(s)	685
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNI	CCWGG	2 cut(s)	735, 867
BstNSI	RCATGY	1 cut(s)	697
BstPI	GGTNACC	1 cut(s)	1046
BstSCI	CCNGG	3 cut(s)	129, 733, 865
BstSFI	CTRYAG	2 cut(s)	221, 303
BstSLI	GKGCMC	1 cut(s)	706
BstV1I	GCAGC	2 cut(s)	289, 991
BstX2I	RGATCY	2 cut(s)	656, 730
BstYI	RGATCY	2 cut(s)	656, 730
BsuRI	GGCC	1 cut(s)	772
BtsCI	GGATG	3 cut(s)	728, 922, 931
BtsI	GCAGTG	1 cut(s)	747
BtsIMutI	CAGTG	3 cut(s)	292, 747, 786
BveI	ACCTGC	1 cut(s)	305
Cac8I	GCNNGC	1 cut(s)	69
CciI	TCATGA	1 cut(s)	148
CfoI	GCGC	1 cut(s)	302
Cfr13I	GGNCC	2 cut(s)	771, 1063
Csp6I	GTAC	2 cut(s)	355, 385
CspCI	CAANNNNNGTGG	2 cut(s)	468, 503
CviAII	CATG	5 cut(s)	149, 582, 694, 907, 1111
CviQI	GTAC	2 cut(s)	355, 385
DdeI	CTNAG	3 cut(s)	177, 544, 975
DpnI	GATC	5 cut(s)	102, 436, 658, 684, 732
DpnII	GATC	5 cut(s)	100, 434, 656, 682, 730
Eam1104I	CTCTTC	2 cut(s)	150, 915
EarI	CTCTTC	2 cut(s)	150, 915
Eco31I	GGTCTC	2 cut(s)	639, 984
Eco47I	GGWCC	1 cut(s)	1063
Eco57I	CTGAAG	3 cut(s)	189, 212, 779
Eco91I	GGTNACC	1 cut(s)	1046
EcoO65I	GGTNACC	1 cut(s)	1046
EcoRII	CCWGG	2 cut(s)	733, 865
FaeI	CATG	5 cut(s)	152, 585, 697, 910, 1114
FaqI	GGGAC	3 cut(s)	412, 682, 1076
FatI	CATG	5 cut(s)	148, 581, 693, 906, 1110
FauNDI	CATATG	2 cut(s)	247, 823
FblI	GTMKAC	1 cut(s)	835
Fnu4HI	GCNGC	2 cut(s)	303, 980
FokI	GGATG	3 cut(s)	735, 929, 938
Fsp4HI	GCNGC	2 cut(s)	303, 980
FspBI	CTAG	3 cut(s)	375, 602, 797
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	2 cut(s)	303, 980
GsaI	CCCAGC	2 cut(s)	665, 669
GsuI	CTGGAG	1 cut(s)	513
HaeIII	GGCC	1 cut(s)	772
HapII	CCGG	2 cut(s)	130, 462
HhaI	GCGC	1 cut(s)	302
Hin1II	CATG	5 cut(s)	152, 585, 697, 910, 1114
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HincII	GTYRAC	1 cut(s)	836
HindII	GTYRAC	1 cut(s)	836
HpaII	CCGG	2 cut(s)	130, 462
HphI	GGTGA	5 cut(s)	97, 119, 230, 644, 914
Hpy166II	GTNNAC	3 cut(s)	127, 704, 836
Hpy188I	TCNGA	6 cut(s)	94, 381, 439, 759, 814, 851
Hpy188III	TCNNGA	3 cut(s)	149, 952, 989
Hpy8I	GTNNAC	3 cut(s)	127, 704, 836
HpyAV	CCTTC	4 cut(s)	187, 252, 688, 754
HpyCH4III	ACNGT	6 cut(s)	76, 420, 577, 718, 781, 1141
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	3 cut(s)	177, 544, 975
Hsp92II	CATG	5 cut(s)	152, 585, 697, 910, 1114
HspAI	GCGC	1 cut(s)	300
Kzo9I	GATC	5 cut(s)	100, 434, 656, 682, 730
LguI	GCTCTTC	1 cut(s)	150
LmnI	GCTCC	3 cut(s)	331, 410, 532
Lsp1109I	GCAGC	2 cut(s)	289, 991
LweI	GCATC	1 cut(s)	1103
MaeI	CTAG	3 cut(s)	375, 602, 797
MaeIII	GTNAC	8 cut(s)	3, 40, 414, 505, 577, 902, 1034, 1046
MalI	GATC	5 cut(s)	102, 436, 658, 684, 732
MboI	GATC	5 cut(s)	100, 434, 656, 682, 730
MboII	GAAGA	3 cut(s)	137, 932, 1089
MflI	RGATCY	2 cut(s)	656, 730
MhlI	GDGCHC	1 cut(s)	706
MseI	TTAA	4 cut(s)	165, 351, 426, 1156
MslI	CAYNNNNRTG	2 cut(s)	62, 334
MspA1I	CMGCKG	1 cut(s)	665
MspI	CCGG	2 cut(s)	130, 462
MspR9I	CCNGG	3 cut(s)	131, 735, 867
MvaI	CCWGG	2 cut(s)	735, 867
MwoI	GCNNNNNNNGC	1 cut(s)	140
NciI	CCSGG	1 cut(s)	131
NdeI	CATATG	2 cut(s)	247, 823
NdeII	GATC	5 cut(s)	100, 434, 656, 682, 730
NlaIII	CATG	5 cut(s)	152, 585, 697, 910, 1114
NlaIV	GGNNCC	3 cut(s)	406, 931, 1064
NmuCI	GTSAC	1 cut(s)	902
NspI	RCATGY	1 cut(s)	697
OliI	CACNNNNGTG	1 cut(s)	62
PagI	TCATGA	1 cut(s)	148
PciSI	GCTCTTC	1 cut(s)	150
PfoI	TCCNGGA	2 cut(s)	733, 865
PkrI	GCNGC	2 cut(s)	304, 981
Ple19I	CGATCG	1 cut(s)	685
Psp6I	CCWGG	2 cut(s)	733, 865
PspEI	GGTNACC	1 cut(s)	1046
PspFI	CCCAGC	2 cut(s)	661, 665
PspGI	CCWGG	2 cut(s)	733, 865
PspN4I	GGNNCC	3 cut(s)	406, 931, 1064
PspPI	GGNCC	2 cut(s)	771, 1063
PstI	CTGCAG	2 cut(s)	225, 307
PsuI	RGATCY	2 cut(s)	656, 730
PvuI	CGATCG	1 cut(s)	685
PvuII	CAGCTG	1 cut(s)	665
RsaI	GTAC	2 cut(s)	356, 386
RsaNI	GTAC	2 cut(s)	355, 385
RseI	CAYNNNNRTG	2 cut(s)	62, 334
SalI	GTCGAC	1 cut(s)	834
SapI	GCTCTTC	1 cut(s)	150
SaqAI	TTAA	4 cut(s)	165, 351, 426, 1156
SatI	GCNGC	2 cut(s)	303, 980
Sau3AI	GATC	5 cut(s)	100, 434, 656, 682, 730
Sau96I	GGNCC	2 cut(s)	771, 1063
ScrFI	CCNGG	3 cut(s)	131, 735, 867
SduI	GDGCHC	1 cut(s)	706
SfaNI	GCATC	1 cut(s)	1103
SfcI	CTRYAG	2 cut(s)	221, 303
SinI	GGWCC	1 cut(s)	1063
SmiMI	CAYNNNNRTG	2 cut(s)	62, 334
SsiI	CCGC	1 cut(s)	122
SspMI	CTAG	3 cut(s)	375, 602, 797
StyD4I	CCNGG	3 cut(s)	129, 733, 865
TaaI	ACNGT	6 cut(s)	76, 420, 577, 718, 781, 1141
TaqI	TCGA	3 cut(s)	681, 835, 988
Tru1I	TTAA	4 cut(s)	165, 351, 426, 1156
Tru9I	TTAA	4 cut(s)	165, 351, 426, 1156
TscAI	CASTG	3 cut(s)	292, 754, 786
TseFI	GTSAC	1 cut(s)	902
TseI	GCWGC	2 cut(s)	302, 979
Tsp45I	GTSAC	1 cut(s)	902
TspDTI	ATGAA	6 cut(s)	44, 137, 234, 810, 933, 951
TspRI	CASTG	3 cut(s)	292, 754, 786
VneI	GTGCAC	1 cut(s)	702
VpaK11BI	GGWCC	1 cut(s)	1063
XapI	RAATTY	3 cut(s)	280, 310, 874
XceI	RCATGY	1 cut(s)	697
XmiI	GTMKAC	1 cut(s)	835
XspI	CTAG	3 cut(s)	375, 602, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.