Rmu_sc0020676.1_g000001

Purple acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020676.1
OG0002060
Physical Location & Seq
Forward (+)
750 .. 1957
1208 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020676.1_g000001.1.cds

Sequence Viewer

Length: 681 bp
atgaaacaactgaaagtgatgaggttgttaattctgttgggtcttgtaatcatccaagaggcaacttcacatggagagcaccctctctccagaattgctattcatgaagcaacctttgctcttcatgaccttgcttatatcaaagcctctcccactgttctaggattaagggggcaagacactgaatgggtgactttggaatttggttctgaaaacccttcaactgaggattggattggagtattttctcctgctaattttagtgcttcttcctgccctgaggaaaatccaagagtttatcctccatttttgtgctctgcacctattaagtttcaatatgcaaattactccagtcccgagtacaaggacactggaaaaggcctcttgaagcttcagctgatcaaccagagatcagacttctctttcgcgctgttctctggtggtttactgaatccaaaggtcgtggcggtgtcaaatgttgtagctttctctaatccaaatgcaccagtttatccacgagtagcacaagggaaagaatggaatgaaatgactgtaacatggactagtggatatgggattgatgaggcagagccttttgttgattggggtccaagaggagaacgtttgcgttccccggctgtgacacaaacttttgatcgttatagcatgtgtggtctgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

226

Amino Acids

25.08

Weight (kDa)

5.6

Isoelectric Point (pI)

34.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 428
AciI CCGC 1 cut(s) 467
AclI AACGTT 1 cut(s) 622
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 1 cut(s) 377
AfaI GTAC 1 cut(s) 362
AgsI TTSAA 3 cut(s) 222, 335, 388
AhlI ACTAGT 1 cut(s) 563
AluBI AGCT 3 cut(s) 391, 397, 485
AluI AGCT 3 cut(s) 391, 397, 485
Alw21I GWGCWC 2 cut(s) 81, 317
Ama87I CYCGRG 1 cut(s) 356
AoxI GGCC 1 cut(s) 379
ApoI RAATTY 1 cut(s) 200
ArsI GACNNNNNNTTYG 2 cut(s) 407, 439
AspLEI GCGC 1 cut(s) 430
AspS9I GGNCC 1 cut(s) 608
AsuC2I CCSGG 1 cut(s) 635
AsuHPI GGTGA 1 cut(s) 202
AvaI CYCGRG 1 cut(s) 356
AvaII GGWCC 1 cut(s) 608
AxyI CCTNAGG 1 cut(s) 279
BauI CACGAG 1 cut(s) 516
Bbv12I GWGCWC 2 cut(s) 81, 317
BclI TGATCA 1 cut(s) 399
BcnI CCSGG 1 cut(s) 635
BcuI ACTAGT 1 cut(s) 563
BfaI CTAG 2 cut(s) 161, 564
Bme1390I CCNGG 1 cut(s) 635
Bme18I GGWCC 1 cut(s) 608
BmeT110I CYCGRG 1 cut(s) 356
BmgT120I GGNCC 1 cut(s) 608
BmiI GGNNCC 1 cut(s) 609
BmrFI CCNGG 1 cut(s) 635
BpmI CTGGAG 2 cut(s) 73, 334
BpuMI CCSGG 1 cut(s) 635
BsaJI CCNNGG 1 cut(s) 633
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bse1I ACTGG 3 cut(s) 351, 376, 506
Bse21I CCTNAGG 1 cut(s) 279
BseDI CCNNGG 1 cut(s) 633
BseGI GGATG 1 cut(s) 51
BseMII CTCAG 2 cut(s) 216, 270
BseNI ACTGG 3 cut(s) 351, 376, 506
BseRI GAGGAG 1 cut(s) 630
BsgI GTGCAG 1 cut(s) 303
Bsh1236I CGCG 1 cut(s) 428
BshFI GGCC 1 cut(s) 381
BsiHKAI GWGCWC 2 cut(s) 81, 317
BsiHKCI CYCGRG 1 cut(s) 356
BsiSI CCGG 1 cut(s) 635
BslFI GGGAC 1 cut(s) 339
BsmFI GGGAC 1 cut(s) 339
BsnI GGCC 1 cut(s) 381
BsoBI CYCGRG 1 cut(s) 356
Bsp1286I GDGCHC 2 cut(s) 81, 317
Bsp143I GATC 3 cut(s) 399, 410, 655
BspACI CCGC 1 cut(s) 467
BspANI GGCC 1 cut(s) 381
BspCNI CTCAG 2 cut(s) 217, 271
BspFNI CGCG 1 cut(s) 428
BspHI TCATGA 2 cut(s) 103, 124
BspLI GGNNCC 1 cut(s) 609
BspQI GCTCTTC 1 cut(s) 126
BsrI ACTGG 3 cut(s) 351, 376, 506
BssECI CCNNGG 1 cut(s) 633
BssMI GATC 3 cut(s) 399, 410, 655
BssSI CACGAG 1 cut(s) 516
Bst2BI CACGAG 1 cut(s) 516
Bst4CI ACNGT 2 cut(s) 157, 553
Bst6I CTCTTC 1 cut(s) 126
BstAPI GCANNNNNTGC 1 cut(s) 116
BstDEI CTNAG 2 cut(s) 225, 279
BstF5I GGATG 1 cut(s) 51
BstFNI CGCG 1 cut(s) 428
BstHHI GCGC 1 cut(s) 430
BstKTI GATC 3 cut(s) 402, 413, 658
BstMBI GATC 3 cut(s) 399, 410, 655
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstNSI RCATGY 1 cut(s) 670
BstSCI CCNGG 1 cut(s) 633
BstUI CGCG 1 cut(s) 428
Bsu36I CCTNAGG 1 cut(s) 279
BsuRI GGCC 1 cut(s) 381
BtsCI GGATG 1 cut(s) 51
BtsIMutI CAGTG 3 cut(s) 153, 180, 369
CciI TCATGA 2 cut(s) 103, 124
CfoI GCGC 1 cut(s) 430
Cfr13I GGNCC 1 cut(s) 608
Csp6I GTAC 1 cut(s) 361
CspCI CAANNNNNGTGG 2 cut(s) 444, 479
CviAII CATG 5 cut(s) 71, 104, 125, 558, 667
CviJI RGCY 7 cut(s) 146, 381, 391, 397, 485, 592, 638
CviKI_1 RGCY 7 cut(s) 146, 381, 391, 397, 485, 592, 638
CviQI GTAC 1 cut(s) 361
DdeI CTNAG 2 cut(s) 225, 279
DpnI GATC 3 cut(s) 401, 412, 657
DpnII GATC 3 cut(s) 399, 410, 655
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
Eco147I AGGCCT 1 cut(s) 381
Eco47I GGWCC 1 cut(s) 608
Eco57I CTGAAG 1 cut(s) 377
Eco81I CCTNAGG 1 cut(s) 279
Eco88I CYCGRG 1 cut(s) 356
FaeI CATG 5 cut(s) 74, 107, 128, 561, 670
FaiI YATR 9 cut(s) 72, 105, 126, 138, 339, 559, 573, 663, 668
FaqI GGGAC 1 cut(s) 339
FatI CATG 5 cut(s) 70, 103, 124, 557, 666
FbaI TGATCA 1 cut(s) 399
FokI GGATG 1 cut(s) 38
FspBI CTAG 2 cut(s) 161, 564
GlaI GCGC 1 cut(s) 429
GsuI CTGGAG 2 cut(s) 73, 334
HaeIII GGCC 1 cut(s) 381
HapII CCGG 1 cut(s) 635
HhaI GCGC 1 cut(s) 430
Hin1II CATG 5 cut(s) 74, 107, 128, 561, 670
Hin6I GCGC 1 cut(s) 428
HinP1I GCGC 1 cut(s) 428
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 1 cut(s) 451
HpaII CCGG 1 cut(s) 635
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 1 cut(s) 446
Hpy188I TCNGA 2 cut(s) 211, 415
Hpy188III TCNNGA 5 cut(s) 90, 104, 125, 356, 385
Hpy8I GTNNAC 1 cut(s) 446
HpyAV CCTTC 1 cut(s) 228
HpyCH4III ACNGT 2 cut(s) 157, 553
HpyCH4IV ACGT 1 cut(s) 622
HpyCH4V TGCA 3 cut(s) 320, 341, 503
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpyF3I CTNAG 2 cut(s) 225, 279
HpySE526I ACGT 1 cut(s) 622
Hsp92II CATG 5 cut(s) 74, 107, 128, 561, 670
HspAI GCGC 1 cut(s) 428
Ksp22I TGATCA 1 cut(s) 399
Kzo9I GATC 3 cut(s) 399, 410, 655
LguI GCTCTTC 1 cut(s) 126
MaeI CTAG 2 cut(s) 161, 564
MaeII ACGT 1 cut(s) 622
MaeIII GTNAC 3 cut(s) 190, 553, 640
MalI GATC 3 cut(s) 401, 412, 657
MboI GATC 3 cut(s) 399, 410, 655
MboII GAAGA 2 cut(s) 113, 261
MhlI GDGCHC 2 cut(s) 81, 317
MluCI AATT 5 cut(s) 30, 93, 200, 256, 343
MseI TTAA 3 cut(s) 29, 167, 327
MslI CAYNNNNRTG 1 cut(s) 310
MspA1I CMGCKG 1 cut(s) 397
MspI CCGG 1 cut(s) 635
MspR9I CCNGG 1 cut(s) 635
MvnI CGCG 1 cut(s) 428
MwoI GCNNNNNNNGC 1 cut(s) 116
NciI CCSGG 1 cut(s) 635
NdeII GATC 3 cut(s) 399, 410, 655
NlaIII CATG 5 cut(s) 74, 107, 128, 561, 670
NlaIV GGNNCC 1 cut(s) 609
NmuCI GTSAC 2 cut(s) 190, 640
NspI RCATGY 1 cut(s) 670
PagI TCATGA 2 cut(s) 103, 124
PceI AGGCCT 1 cut(s) 381
PciSI GCTCTTC 1 cut(s) 126
PfeI GAWTC 1 cut(s) 451
Psp1406I AACGTT 1 cut(s) 622
PspN4I GGNNCC 1 cut(s) 609
PspPI GGNCC 1 cut(s) 608
PvuII CAGCTG 1 cut(s) 397
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
RseI CAYNNNNRTG 1 cut(s) 310
SapI GCTCTTC 1 cut(s) 126
SaqAI TTAA 3 cut(s) 29, 167, 327
Sau3AI GATC 3 cut(s) 399, 410, 655
Sau96I GGNCC 1 cut(s) 608
ScrFI CCNGG 1 cut(s) 635
SduI GDGCHC 2 cut(s) 81, 317
SetI ASST 9 cut(s) 26, 116, 132, 325, 393, 399, 462, 487, 625
SinI GGWCC 1 cut(s) 608
SmiMI CAYNNNNRTG 1 cut(s) 310
SpeI ACTAGT 1 cut(s) 563
Sse9I AATT 5 cut(s) 30, 93, 200, 256, 343
SseBI AGGCCT 1 cut(s) 381
SsiI CCGC 1 cut(s) 467
SspMI CTAG 2 cut(s) 161, 564
StuI AGGCCT 1 cut(s) 381
StyD4I CCNGG 1 cut(s) 633
TaaI ACNGT 2 cut(s) 157, 553
TaiI ACGT 1 cut(s) 625
TasI AATT 5 cut(s) 30, 93, 200, 256, 343
TatI WGTACW 1 cut(s) 360
TfiI GAWTC 1 cut(s) 451
Tru1I TTAA 3 cut(s) 29, 167, 327
Tru9I TTAA 3 cut(s) 29, 167, 327
TscAI CASTG 3 cut(s) 160, 187, 376
TseFI GTSAC 2 cut(s) 190, 640
Tsp45I GTSAC 2 cut(s) 190, 640
TspDTI ATGAA 5 cut(s) 17, 92, 113, 120, 558
TspRI CASTG 3 cut(s) 160, 187, 376
VpaK11BI GGWCC 1 cut(s) 608
XapI RAATTY 1 cut(s) 200
XceI RCATGY 1 cut(s) 670
XspI CTAG 2 cut(s) 161, 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.