Rmu_sc0019493.1_g000001

E3 SUMO-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019493.1
OG0005389
Physical Location & Seq
Reverse (-)
849 .. 4820
3972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019493.1_g000001.1.cds

Sequence Viewer

Length: 1779 bp
atgcctgttcgtgcaattaatagacctggttcgcaacttcttggagctaatggtcgtgatgatggtccaattattctcaacctgattcccaaggagtctgatggtgagcgttttgaagatgctcttgctcgtgtttgtcgttgtgttggtggtggcactgcaatggataatgctgatagtgacagtgacttggaagtcgtggcagattcgtttaccgtcaatctacgttgtcctatgagtggttcaaggatgaaggttgctggtagattcaaaccttgtcttcacatgggctgttttgatcttgatgtttttgttgaactaaatcagcgctcaaggaagtggcaatgtccaatttgtctaaagaactatgcgctggagaatgttattattgatccttattttaatcgtatagcttccaagatgaggcattgtggagaagatgttgcagagattgaagtgaagcctgatggttcttggcgagtgaaggttaaaagtgaaagtgaacgcagggaacttggggaacttgggcggtggcaccttcctgatagtacgctttgcgttccaacacatggagaaactatcccaaaatctgaagtgttgaagccggtcaaacaggaaggggtttcagaaggtcatactggtttgaaactaggaatcagaaagaaccggaatggtgtttgggaattcagcagacctgaagaaatgaacacctcttctggtaataaattacaacagcagtttggagaacatgagctaaaagttatccccatgagtagcagtgccactgggagtggtagggatggtgaagatgcaagtgtaaatcaggagggtggtgggaattttgatttctctacaaacaatggaatagagatggattctttttctctgaatgttgattcagcatatgcatttgcggaaccaaattcttctgcacccgtaggagatgctgatgttattgtactaagtgattcagacgaagaaataatgccttctgaaaccatttatgggactaattttactgatgctggtgggattggttttcccatgcccgctcctggaattgctgattcttatggtgaagatcccgtgcttgctaatggtggaaattcatgcttgggtctttttagtggcaatgatgatgaatatatgtccaactggtcatcattacctcctggaactcatactaaccctggattccaattatttagttctgaggcagatctaccagatcccctgtgtctcccgcaggattctgtaaattgttccacatctatgaatggatacactttggctccagaaactgccatgggatctgctactctagcccatgaatcatctgttggtcctttagatgctgacatgaatgatggcttagttgacaatcccttggcttttgctggtgatgatccctctcttcaaatatttcttcccacaagaccatcagatgcatcacttcaatccaatttgagagatcgggctgatgtgtcgaatggtgttcattcggaggattggatatctcttaggctagggggtgatgccagtggcattaaaggagaatctggaactccaaatggacagatttcgaaacggcatgtgccatctagagaagctacaatgaattctttggctgaagcttctttgcttctcggtatgaataatgacagtggcagatctgacaagagaagtaggccgagatcaaatagtcccttttcatttcctcgccaaaaacgttcttcaagaacacggttgtttctttctattgactctgactctgaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0001101 GO:0002682 GO:0002683 GO:0002831 GO:0002832 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006935 GO:0006950 GO:0007154 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009267 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009553 GO:0009593 GO:0009605 GO:0009628 GO:0009653 GO:0009787 GO:0009791 GO:0009826 GO:0009856 GO:0009908 GO:0009909 GO:0009910 GO:0009966 GO:0009987 GO:0009991 GO:0010035 GO:0010112 GO:0010113 GO:0010183 GO:0010247 GO:0010286 GO:0010337 GO:0010565 GO:0010646 GO:0010817 GO:0016036 GO:0016043 GO:0016049 GO:0016740 GO:0016925 GO:0018193 GO:0018205 GO:0019222 GO:0019538 GO:0019787 GO:0019789 GO:0022414 GO:0023051 GO:0031323 GO:0031347 GO:0031348 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032102 GO:0032350 GO:0032446 GO:0032501 GO:0032502 GO:0032989 GO:0033554 GO:0035670 GO:0036211 GO:0040007 GO:0040008 GO:0040011 GO:0042221 GO:0042330 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044706 GO:0045088 GO:0045824 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048868 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0050918 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051301 GO:0051606 GO:0051704 GO:0051716 GO:0060560 GO:0061458 GO:0061659 GO:0061665 GO:0062012 GO:0065007 GO:0065008 GO:0070647 GO:0071496 GO:0071704 GO:0071840 GO:0080134 GO:0090352 GO:0090567 GO:0099402 GO:0140096 GO:1901419 GO:1901564 GO:1901700 GO:1903314 GO:1905957 GO:2000026 GO:2000070 GO:2000241 GO:2000242
KEGG Pathways
Metabolic & Signaling
ko04120 ko04630 ko05160 map04120 map04630 map05160
Pfam Domains
Protein Families
PHD SAP zf-MIZ

Protein Analysis

592

Amino Acids

63.86

Weight (kDa)

4.74

Isoelectric Point (pI)

49.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 194
AccB1I GGYRCC 1 cut(s) 534
AccB7I CCANNNNNTGG 1 cut(s) 569
AccBSI CCGCTC 1 cut(s) 1052
AciI CCGC 4 cut(s) 529, 914, 1050, 1244
AclI AACGTT 1 cut(s) 1729
AclWI GGATC 5 cut(s) 386, 1076, 1223, 1318, 1400
AcsI RAATTY 5 cut(s) 683, 838, 922, 1105, 1618
AcuI CTGAAG 3 cut(s) 612, 717, 1650
AfaI GTAC 2 cut(s) 550, 960
AfeI AGCGCT 1 cut(s) 329
AfiI CCNNNNNNNGG 5 cut(s) 239, 423, 569, 1005, 1055
AjnI CCWGG 4 cut(s) 25, 1054, 1171, 1189
AjuI GAANNNNNNNTTGG 2 cut(s) 1323, 1355
AluBI AGCT 5 cut(s) 47, 413, 754, 1610, 1634
AluI AGCT 5 cut(s) 47, 413, 754, 1610, 1634
Alw26I GTCTC 1 cut(s) 1244
AlwI GGATC 5 cut(s) 386, 1076, 1223, 1318, 1400
AlwNI CAGNNNCTG 1 cut(s) 1301
Aor51HI AGCGCT 1 cut(s) 329
AoxI GGCC 1 cut(s) 1688
ApoI RAATTY 5 cut(s) 683, 838, 922, 1105, 1618
AseI ATTAAT 1 cut(s) 18
AspLEI GCGC 2 cut(s) 330, 373
AspS9I GGNCC 2 cut(s) 65, 1343
AsuHPI GGTGA 5 cut(s) 116, 815, 1088, 1412, 1544
AsuII TTCGAA 1 cut(s) 1583
AvaII GGWCC 2 cut(s) 65, 1343
BanI GGYRCC 1 cut(s) 534
BauI CACGAG 1 cut(s) 129
BbsI GAAGAC 1 cut(s) 272
BccI CCATC 8 cut(s) 56, 95, 461, 794, 865, 1361, 1447, 1606
BceAI ACGGC 1 cut(s) 1604
BciT130I CCWGG 4 cut(s) 27, 1056, 1173, 1191
BciVI GTATCC 1 cut(s) 1274
BcoDI GTCTC 1 cut(s) 1244
BfaI CTAG 4 cut(s) 650, 1322, 1526, 1602
BfoI RGCGCY 1 cut(s) 331
BfuI GTATCC 1 cut(s) 1274
BglII AGATCT 2 cut(s) 1219, 1670
Bme1390I CCNGG 4 cut(s) 27, 1056, 1173, 1191
Bme18I GGWCC 2 cut(s) 65, 1343
BmgT120I GGNCC 2 cut(s) 65, 1343
BmiI GGNNCC 3 cut(s) 536, 918, 1293
BmrFI CCNGG 4 cut(s) 27, 1056, 1173, 1191
BmrI ACTGGG 1 cut(s) 795
BmsI GCATC 8 cut(s) 109, 799, 934, 1012, 1342, 1435, 1457, 1525
BmuI ACTGGG 1 cut(s) 795
BpiI GAAGAC 1 cut(s) 272
BpmI CTGGAG 2 cut(s) 395, 1278
Bpu14I TTCGAA 1 cut(s) 1583
BpuEI CTTGAG 1 cut(s) 316
BsaJI CCNNGG 4 cut(s) 90, 1189, 1305, 1386
BsaWI WCCGGW 1 cut(s) 666
BsaXI ACNNNNNCTCC 4 cut(s) 426, 456, 1276, 1306
Bsc4I CCNNNNNNNGG 5 cut(s) 239, 423, 569, 1005, 1055
Bse118I RCCGGY 1 cut(s) 604
Bse1I ACTGG 4 cut(s) 643, 790, 1160, 1539
Bse3DI GCAATG 3 cut(s) 168, 350, 1138
BseBI CCWGG 4 cut(s) 27, 1056, 1173, 1191
BseDI CCNNGG 4 cut(s) 90, 1189, 1305, 1386
BseGI GGATG 2 cut(s) 255, 805
BseLI CCNNNNNNNGG 5 cut(s) 239, 423, 569, 1005, 1055
BseMI GCAATG 3 cut(s) 168, 350, 1138
BseMII CTCAG 1 cut(s) 1203
BseNI ACTGG 4 cut(s) 643, 790, 1160, 1539
BsgI GTGCAG 1 cut(s) 915
BshFI GGCC 1 cut(s) 1690
BshNI GGYRCC 1 cut(s) 534
BsiSI CCGG 2 cut(s) 605, 667
BslFI GGGAC 2 cut(s) 1021, 1689
BslI CCNNNNNNNGG 5 cut(s) 239, 423, 569, 1005, 1055
BsmAI GTCTC 1 cut(s) 1244
BsmFI GGGAC 2 cut(s) 1021, 1689
BsnI GGCC 1 cut(s) 1690
Bsp119I TTCGAA 1 cut(s) 1583
Bsp19I CCATGG 1 cut(s) 1305
BspACI CCGC 4 cut(s) 529, 914, 1050, 1244
BspANI GGCC 1 cut(s) 1690
BspCNI CTCAG 1 cut(s) 1204
BspLI GGNNCC 3 cut(s) 536, 918, 1293
BspPI GGATC 5 cut(s) 386, 1076, 1223, 1318, 1400
BspT104I TTCGAA 1 cut(s) 1583
BspT107I GGYRCC 1 cut(s) 534
BsrBI CCGCTC 1 cut(s) 1052
BsrDI GCAATG 3 cut(s) 168, 350, 1138
BsrFI RCCGGY 1 cut(s) 604
BsrI ACTGG 4 cut(s) 643, 790, 1160, 1539
BssAI RCCGGY 1 cut(s) 604
BssECI CCNNGG 4 cut(s) 90, 1189, 1305, 1386
BssSI CACGAG 1 cut(s) 129
BssT1I CCWWGG 3 cut(s) 90, 1305, 1386
Bst2BI CACGAG 1 cut(s) 129
Bst2UI CCWGG 4 cut(s) 27, 1056, 1173, 1191
Bst4CI ACNGT 4 cut(s) 185, 217, 1664, 1746
Bst6I CTCTTC 2 cut(s) 718, 1419
BstBI TTCGAA 1 cut(s) 1583
BstC8I GCNNGC 2 cut(s) 1050, 1092
BstDEI CTNAG 4 cut(s) 962, 1212, 1372, 1520
BstDSI CCRYGG 1 cut(s) 1305
BstF5I GGATG 2 cut(s) 255, 805
BstH2I RGCGCY 1 cut(s) 331
BstHHI GCGC 2 cut(s) 330, 373
BstMAI GTCTC 1 cut(s) 1244
BstMWI GCNNNNNNNGC 1 cut(s) 1322
BstNI CCWGG 4 cut(s) 27, 1056, 1173, 1191
BstNSI RCATGY 1 cut(s) 1595
BstSCI CCNGG 4 cut(s) 25, 1054, 1171, 1189
BstV2I GAAGAC 1 cut(s) 272
BstX2I RGATCY 5 cut(s) 1081, 1219, 1228, 1310, 1670
BstYI RGATCY 5 cut(s) 1081, 1219, 1228, 1310, 1670
BsuI GTATCC 1 cut(s) 1274
BsuRI GGCC 1 cut(s) 1690
BtgI CCRYGG 1 cut(s) 1305
BtsCI GGATG 2 cut(s) 255, 805
BtsI GCAGTG 2 cut(s) 156, 784
BtsIMutI CAGTG 6 cut(s) 156, 190, 783, 784, 1546, 1669
Cac8I GCNNGC 2 cut(s) 1050, 1092
CaiI CAGNNNCTG 1 cut(s) 1301
CfoI GCGC 2 cut(s) 330, 373
Cfr10I RCCGGY 1 cut(s) 604
Cfr13I GGNCC 2 cut(s) 65, 1343
CsiI ACCWGGT 1 cut(s) 25
Csp6I GTAC 2 cut(s) 549, 959
CviQI GTAC 2 cut(s) 549, 959
DdeI CTNAG 4 cut(s) 962, 1212, 1372, 1520
DrdI GACNNNNNNGTC 1 cut(s) 194
DseDI GACNNNNNNGTC 1 cut(s) 194
Eam1104I CTCTTC 2 cut(s) 718, 1419
EarI CTCTTC 2 cut(s) 718, 1419
Eco130I CCWWGG 3 cut(s) 90, 1305, 1386
Eco32I GATATC 1 cut(s) 1515
Eco47I GGWCC 2 cut(s) 65, 1343
Eco47III AGCGCT 1 cut(s) 329
Eco57I CTGAAG 3 cut(s) 612, 717, 1650
EcoRI GAATTC 2 cut(s) 683, 1618
EcoRII CCWGG 4 cut(s) 25, 1054, 1171, 1189
EcoRV GATATC 1 cut(s) 1515
EcoT14I CCWWGG 3 cut(s) 90, 1305, 1386
EcoT22I ATGCAT 2 cut(s) 910, 1450
ErhI CCWWGG 3 cut(s) 90, 1305, 1386
FalI AAGNNNNNCTT 2 cut(s) 108, 140
FaqI GGGAC 2 cut(s) 1021, 1689
FauI CCCGC 2 cut(s) 1057, 1251
FauNDI CATATG 1 cut(s) 904
FokI GGATG 2 cut(s) 262, 812
FspBI CTAG 4 cut(s) 650, 1322, 1526, 1602
GlaI GCGC 2 cut(s) 329, 372
GsuI CTGGAG 2 cut(s) 395, 1278
HaeII RGCGCY 1 cut(s) 331
HaeIII GGCC 1 cut(s) 1690
HapII CCGG 2 cut(s) 605, 667
HhaI GCGC 2 cut(s) 330, 373
Hin6I GCGC 2 cut(s) 328, 371
HinP1I GCGC 2 cut(s) 328, 371
HincII GTYRAC 1 cut(s) 1378
HindII GTYRAC 1 cut(s) 1378
HindIII AAGCTT 1 cut(s) 1632
HpaII CCGG 2 cut(s) 605, 667
HphI GGTGA 5 cut(s) 116, 815, 1088, 1412, 1544
Hpy166II GTNNAC 3 cut(s) 213, 503, 1378
Hpy188III TCNNGA 8 cut(s) 56, 302, 542, 824, 1295, 1560, 1602, 1737
Hpy8I GTNNAC 3 cut(s) 213, 503, 1378
HpyAV CCTTC 6 cut(s) 247, 478, 548, 611, 623, 999
HpyCH4III ACNGT 4 cut(s) 185, 217, 1664, 1746
HpyCH4IV ACGT 2 cut(s) 226, 1729
HpyCH4V TGCA 7 cut(s) 14, 161, 446, 812, 908, 932, 1448
HpyF10VI GCNNNNNNNGC 1 cut(s) 1322
HpyF3I CTNAG 4 cut(s) 962, 1212, 1372, 1520
HpySE526I ACGT 2 cut(s) 226, 1729
HspAI GCGC 2 cut(s) 328, 371
LmnI GCTCC 3 cut(s) 44, 1057, 1297
LweI GCATC 8 cut(s) 109, 799, 934, 1012, 1342, 1435, 1457, 1525
MabI ACCWGGT 1 cut(s) 25
MaeI CTAG 4 cut(s) 650, 1322, 1526, 1602
MaeII ACGT 2 cut(s) 226, 1729
MaeIII GTNAC 2 cut(s) 179, 185
MbiI CCGCTC 1 cut(s) 1052
MflI RGATCY 5 cut(s) 1081, 1219, 1228, 1310, 1670
MlyI GAGTC 3 cut(s) 104, 1757, 1763
MmeI TCCRAC 2 cut(s) 587, 1176
MnlI CCTC 8 cut(s) 417, 721, 820, 1179, 1207, 1420, 1498, 1728
Mph1103I ATGCAT 2 cut(s) 910, 1450
MseI TTAA 4 cut(s) 18, 402, 489, 1548
MslI CAYNNNNRTG 2 cut(s) 161, 1271
MspI CCGG 2 cut(s) 605, 667
MspR9I CCNGG 4 cut(s) 27, 1056, 1173, 1191
MvaI CCWGG 4 cut(s) 27, 1056, 1173, 1191
MwoI GCNNNNNNNGC 1 cut(s) 1322
NcoI CCATGG 1 cut(s) 1305
NdeI CATATG 1 cut(s) 904
NlaIV GGNNCC 3 cut(s) 536, 918, 1293
NmeAIII GCCGAG 1 cut(s) 1716
NmuCI GTSAC 2 cut(s) 179, 185
NsiI ATGCAT 2 cut(s) 910, 1450
NspI RCATGY 1 cut(s) 1595
NspV TTCGAA 1 cut(s) 1583
PcsI WCGNNNNNNNCGW 2 cut(s) 136, 1726
PflMI CCANNNNNTGG 1 cut(s) 569
PfoI TCCNGGA 2 cut(s) 1054, 1171
PleI GAGTC 3 cut(s) 103, 1757, 1763
PpsI GAGTC 3 cut(s) 103, 1757, 1763
PshBI ATTAAT 1 cut(s) 18
Psp1406I AACGTT 1 cut(s) 1729
Psp6I CCWGG 4 cut(s) 25, 1054, 1171, 1189
PspGI CCWGG 4 cut(s) 25, 1054, 1171, 1189
PspN4I GGNNCC 3 cut(s) 536, 918, 1293
PspPI GGNCC 2 cut(s) 65, 1343
PstNI CAGNNNCTG 1 cut(s) 1301
PsuI RGATCY 5 cut(s) 1081, 1219, 1228, 1310, 1670
RsaI GTAC 2 cut(s) 550, 960
RsaNI GTAC 2 cut(s) 549, 959
RseI CAYNNNNRTG 2 cut(s) 161, 1271
SaqAI TTAA 4 cut(s) 18, 402, 489, 1548
Sau96I GGNCC 2 cut(s) 65, 1343
SchI GAGTC 3 cut(s) 104, 1757, 1763
ScrFI CCNGG 4 cut(s) 27, 1056, 1173, 1191
SexAI ACCWGGT 1 cut(s) 25
SfaNI GCATC 8 cut(s) 109, 799, 934, 1012, 1342, 1435, 1457, 1525
SfuI TTCGAA 1 cut(s) 1583
SinI GGWCC 2 cut(s) 65, 1343
SmiMI CAYNNNNRTG 2 cut(s) 161, 1271
SmlI CTYRAG 1 cut(s) 331
SmoI CTYRAG 1 cut(s) 331
SsiI CCGC 4 cut(s) 529, 914, 1050, 1244
SspI AATATT 1 cut(s) 1422
SspMI CTAG 4 cut(s) 650, 1322, 1526, 1602
StyD4I CCNGG 4 cut(s) 25, 1054, 1171, 1189
StyI CCWWGG 3 cut(s) 90, 1305, 1386
TaaI ACNGT 4 cut(s) 185, 217, 1664, 1746
TaiI ACGT 2 cut(s) 229, 1732
TaqI TCGA 2 cut(s) 1487, 1583
TatI WGTACW 1 cut(s) 958
Tru1I TTAA 4 cut(s) 18, 402, 489, 1548
Tru9I TTAA 4 cut(s) 18, 402, 489, 1548
TscAI CASTG 6 cut(s) 163, 190, 784, 790, 1546, 1669
TseFI GTSAC 2 cut(s) 179, 185
Tsp45I GTSAC 2 cut(s) 179, 185
TspRI CASTG 6 cut(s) 163, 190, 784, 790, 1546, 1669
Van91I CCANNNNNTGG 1 cut(s) 569
VpaK11BI GGWCC 2 cut(s) 65, 1343
VspI ATTAAT 1 cut(s) 18
XapI RAATTY 5 cut(s) 683, 838, 922, 1105, 1618
XbaI TCTAGA 1 cut(s) 1601
XceI RCATGY 1 cut(s) 1595
XspI CTAG 4 cut(s) 650, 1322, 1526, 1602
Zsp2I ATGCAT 2 cut(s) 910, 1450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.